Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 C 1.53000 * 109.47067 * 120.00055 * 2 1 3 5 5 C 1.53003 * 109.47516 * 175.17244 * 4 2 1 6 6 C 1.52996 * 109.46975 * 185.37096 * 5 4 2 7 7 C 1.53008 * 109.47040 * 177.02471 * 6 5 4 8 8 H 1.08999 * 109.47096 * 301.54523 * 7 6 5 9 9 C 1.52998 * 109.47458 * 181.54114 * 7 6 5 10 10 N 1.46503 * 109.46912 * 61.54250 * 7 6 5 11 11 C 1.36942 * 119.99795 * 62.57956 * 10 7 6 12 12 H 1.08006 * 119.99769 * 38.06311 * 11 10 7 13 13 C 1.38806 * 119.99961 * 218.05453 * 11 10 7 14 14 N 1.31621 * 120.00050 * 212.87146 * 13 11 10 15 15 Si 1.86800 * 120.00224 * 32.88178 * 13 11 10 16 16 H 1.48500 * 109.47553 * 90.27577 * 15 13 11 17 17 H 1.48501 * 109.47303 * 210.27703 * 15 13 11 18 18 H 1.48505 * 109.46927 * 330.27657 * 15 13 11 19 19 C 1.46500 * 120.00223 * 242.58622 * 10 7 6 20 20 C 1.50703 * 109.46928 * 276.56311 * 19 10 7 21 21 C 1.38232 * 120.00347 * 269.73047 * 20 19 10 22 22 C 1.38230 * 119.99968 * 179.76617 * 21 20 19 23 23 C 1.38235 * 119.99985 * 0.50447 * 22 21 20 24 24 C 1.38230 * 119.99946 * 359.74468 * 23 22 21 25 25 C 1.38227 * 120.00410 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47263 * 300.00115 * 1 2 3 27 27 H 1.09005 * 109.46960 * 60.00206 * 1 2 3 28 28 H 1.08997 * 109.47394 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47541 * 239.99629 * 2 1 3 30 30 H 1.08996 * 109.47084 * 63.28884 * 3 2 1 31 31 H 1.08998 * 109.46893 * 183.28846 * 3 2 1 32 32 H 1.08996 * 109.46877 * 303.28843 * 3 2 1 33 33 H 1.09007 * 109.47307 * 55.17092 * 4 2 1 34 34 H 1.09000 * 109.46800 * 295.17232 * 4 2 1 35 35 H 1.09003 * 109.46955 * 65.37320 * 5 4 2 36 36 H 1.08989 * 109.47011 * 305.37588 * 5 4 2 37 37 H 1.09001 * 109.47323 * 57.03034 * 6 5 4 38 38 H 1.09000 * 109.47832 * 297.02318 * 6 5 4 39 39 H 1.08995 * 109.47168 * 305.47206 * 9 7 6 40 40 H 1.09004 * 109.46965 * 65.46899 * 9 7 6 41 41 H 1.09000 * 109.47263 * 185.46645 * 9 7 6 42 42 H 0.97003 * 119.99970 * 179.97438 * 14 13 11 43 43 H 1.09003 * 109.47260 * 156.56701 * 19 10 7 44 44 H 1.08997 * 109.47047 * 36.56568 * 19 10 7 45 45 H 1.08004 * 119.99536 * 359.97438 * 21 20 19 46 46 H 1.08006 * 119.99874 * 180.22729 * 22 21 20 47 47 H 1.08002 * 119.99549 * 179.72339 * 23 22 21 48 48 H 1.08003 * 119.99684 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.00738 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5651 -0.8273 1.1901 6 6 4.0642 -1.6640 2.3698 7 6 5.5817 -1.8323 2.2698 8 1 5.8326 -2.3115 1.3235 9 6 6.0760 -2.7010 3.4282 10 7 6.2244 -0.5174 2.3368 11 6 6.0947 0.2515 3.4625 12 1 6.1046 -0.2128 4.4376 13 6 5.9508 1.6275 3.3503 14 7 6.4498 2.4190 4.2760 15 14 5.0488 2.3560 1.8858 16 1 3.6052 2.4870 2.2086 17 1 5.6100 3.6953 1.5749 18 1 5.2140 1.4649 0.7094 19 6 7.0055 -0.0251 1.1994 20 6 8.4018 -0.5878 1.2678 21 6 9.3924 0.1009 1.9426 22 6 10.6719 -0.4178 2.0094 23 6 10.9636 -1.6200 1.3925 24 6 9.9743 -2.3061 0.7134 25 6 8.6936 -1.7899 0.6505 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.7257 1.9390 0.9180 31 1 3.1284 1.4429 -0.0589 32 1 1.6294 1.9730 -0.8590 33 1 1.6077 -1.7210 1.2936 34 1 1.7489 -0.1599 2.1371 35 1 4.0010 0.1704 1.2421 36 1 3.8602 -1.3044 0.2557 37 1 3.5878 -2.6441 2.3475 38 1 3.8154 -1.1601 3.3038 39 1 5.7411 -2.2722 4.3726 40 1 5.6739 -3.7088 3.3239 41 1 7.1652 -2.7411 3.4133 42 1 6.3496 3.3806 4.1974 43 1 7.0505 1.0635 1.2334 44 1 6.5318 -0.3402 0.2697 45 1 9.1656 1.0425 2.4205 46 1 11.4450 0.1186 2.5398 47 1 11.9644 -2.0229 1.4410 48 1 10.2023 -3.2452 0.2311 49 1 7.9207 -2.3258 0.1195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170087679.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = 5.438095 kcal Electronic energy + Delta-G solvation = -24383.433669 eV Core-core repulsion = 21309.491190 eV Total energy + Delta-G solvation = -3073.942480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.18142 -38.79875 -37.46295 -34.63551 -33.61081 -32.05432 -31.62388 -30.70824 -28.12898 -27.30960 -27.03018 -25.11428 -23.26641 -22.77792 -22.02556 -21.19213 -20.66317 -18.49499 -17.43896 -17.14813 -16.82808 -16.10898 -15.95465 -15.67765 -15.24520 -15.00828 -14.95562 -14.74192 -14.18207 -14.08477 -14.01328 -13.90965 -13.55434 -13.42148 -13.09705 -12.95213 -12.87503 -12.73448 -12.46380 -12.30443 -12.22839 -12.13904 -11.95307 -11.72854 -11.67975 -11.50983 -11.47222 -11.25230 -11.04416 -10.84611 -10.47930 -9.66840 -9.47486 -8.62879 -8.19643 -5.42306 0.62106 0.65631 1.34546 1.44812 1.48538 2.47325 2.90005 3.16992 3.57126 3.83393 3.98989 4.05897 4.09055 4.17813 4.26969 4.29552 4.40557 4.45263 4.51826 4.53758 4.61579 4.72790 4.77222 4.77680 4.81287 4.88761 4.92235 4.93355 4.99388 5.01198 5.03416 5.08021 5.15487 5.24285 5.25957 5.28816 5.30424 5.32484 5.43789 5.50996 5.60083 5.68715 5.70160 5.71227 5.74962 5.96589 6.01094 6.28718 6.32530 7.08778 7.75170 8.19371 8.99898 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.005572 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.228725 B = 5023.488994 C = 5646.089155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.157 4.157 4 C -0.111 4.111 5 C -0.123 4.123 6 C -0.117 4.117 7 C 0.167 3.833 8 H 0.074 0.926 9 C -0.142 4.142 10 N -0.589 5.589 11 C -0.233 4.233 12 H 0.036 0.964 13 C -0.007 4.007 14 N -0.934 5.934 15 Si 0.903 3.097 16 H -0.289 1.289 17 H -0.324 1.324 18 H -0.228 1.228 19 C 0.181 3.819 20 C -0.098 4.098 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.257 0.743 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -10.678 -11.495 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.215 4.215 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.155 4.155 7 C 0.062 3.938 8 H 0.092 0.908 9 C -0.201 4.201 10 N -0.310 5.310 11 C -0.363 4.363 12 H 0.053 0.947 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.733 3.267 16 H -0.216 1.216 17 H -0.253 1.253 18 H -0.152 1.152 19 C 0.056 3.944 20 C -0.101 4.101 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.138 4.138 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.144 0.856 47 H 0.163 0.837 48 H 0.166 0.834 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.543 -10.539 -11.432 15.756 hybrid contribution -0.280 1.558 0.398 1.633 sum -2.823 -8.981 -11.034 14.504 Atomic orbital electron populations 1.21805 0.93998 1.02368 1.01716 1.21130 0.96578 0.95000 0.98491 1.22060 1.00430 0.97714 1.01271 1.21650 0.95415 1.00632 0.97138 1.21713 0.95388 1.00674 0.98239 1.21872 0.96458 0.99310 0.97909 1.20650 0.91190 0.84902 0.97075 0.90806 1.21992 0.99801 0.99200 0.99121 1.44141 1.54755 1.17255 1.14896 1.18303 1.43770 0.88197 0.86027 0.94664 1.25923 0.99330 0.96817 0.98322 1.70172 1.44518 1.03647 1.39387 0.86729 0.79930 0.76189 0.83860 1.21629 1.25309 1.15239 1.20235 0.87468 0.96181 0.90502 1.20887 0.96426 0.96139 0.96615 1.21054 0.94209 0.99977 0.99181 1.21304 0.96026 0.97375 1.00362 1.21356 1.00486 0.94856 0.98370 1.21413 0.92690 1.00481 0.99429 1.21172 0.97597 0.94985 1.00064 0.93564 0.91844 0.91431 0.90235 0.94580 0.94372 0.91228 0.90424 0.94338 0.93196 0.91751 0.90638 0.94524 0.95201 0.90974 0.94722 0.93442 0.94732 0.91917 0.89589 0.85629 0.83707 0.83387 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 2 C -0.09 -2.37 2.92 -10.79 -0.03 -2.40 16 3 C -0.16 -4.72 8.65 71.98 0.62 -4.10 16 4 C -0.11 -3.17 4.68 30.60 0.14 -3.03 16 5 C -0.12 -4.06 4.64 30.59 0.14 -3.91 16 6 C -0.12 -3.98 4.62 30.60 0.14 -3.84 16 7 C 0.17 6.04 2.78 44.99 0.13 6.16 16 8 H 0.07 2.33 7.90 -2.39 -0.02 2.31 16 9 C -0.14 -5.05 8.99 71.98 0.65 -4.40 16 10 N -0.59 -26.00 1.35 -682.32 -0.92 -26.92 16 11 C -0.23 -12.70 8.57 84.03 0.72 -11.98 16 12 H 0.04 2.18 7.05 -2.91 -0.02 2.16 16 13 C -0.01 -0.39 5.00 84.86 0.42 0.03 16 14 N -0.93 -58.34 13.97 21.65 0.30 -58.04 16 15 Si 0.90 45.18 21.91 68.60 1.50 46.68 16 16 H -0.29 -14.46 6.90 99.48 0.69 -13.78 16 17 H -0.32 -17.06 7.11 99.48 0.71 -16.36 16 18 H -0.23 -10.22 4.63 99.48 0.46 -9.76 16 19 C 0.18 7.57 3.89 85.63 0.33 7.91 16 20 C -0.10 -3.77 5.45 -19.86 -0.11 -3.88 16 21 C -0.13 -5.11 9.70 22.27 0.22 -4.89 16 22 C -0.13 -4.42 10.05 22.27 0.22 -4.19 16 23 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 24 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 25 C -0.12 -3.69 9.70 22.27 0.22 -3.47 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.04 1.19 7.93 -2.39 -0.02 1.17 16 31 H 0.04 1.28 4.85 -2.39 -0.01 1.27 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.96 2.14 -2.39 -0.01 1.96 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.48 7.67 -2.39 -0.02 1.47 16 39 H 0.03 1.19 7.18 -2.39 -0.02 1.17 16 40 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.03 1.62 4.65 -2.39 -0.01 1.61 16 44 H 0.06 2.32 7.99 -2.39 -0.02 2.30 16 45 H 0.09 4.07 8.06 -2.91 -0.02 4.05 16 46 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 47 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 48 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 49 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -65.16 370.32 6.42 -58.74 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.61 Total: 24.18 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.92 Total: -44.65 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -0.62 Total: -84.96 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.50 Total: 46.68 kcal Total: -65.16 6.42 -58.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170087679.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.182 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds