Wall clock time and date at job start Tue Mar 31 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47041 * 2 1 4 4 N 1.46905 * 109.47280 * 183.98137 * 3 2 1 5 5 C 1.46899 * 110.99683 * 197.79321 * 4 3 2 6 6 C 1.50697 * 109.47435 * 72.24680 * 5 4 3 7 7 H 1.08008 * 120.00025 * 4.45021 * 6 5 4 8 8 C 1.37875 * 120.00116 * 184.44912 * 6 5 4 9 9 N 1.31516 * 119.99891 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99913 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47115 * 60.00004 * 10 8 6 12 12 H 1.48501 * 109.46830 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47013 * 299.99776 * 10 8 6 14 14 C 1.46894 * 111.00072 * 73.83426 * 4 3 2 15 15 H 1.09000 * 109.47490 * 312.41176 * 14 4 3 16 16 C 1.53003 * 109.46967 * 72.41689 * 14 4 3 17 17 C 1.53003 * 109.46997 * 192.41264 * 14 4 3 18 18 C 1.52999 * 109.47351 * 62.94624 * 17 14 4 19 19 C 1.50703 * 109.47296 * 175.00687 * 18 17 14 20 20 C 1.38236 * 119.99656 * 90.00156 * 19 18 17 21 21 C 1.38234 * 119.99398 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00271 * 0.25460 * 21 20 19 23 23 C 1.50697 * 120.00375 * 179.72173 * 22 21 20 24 24 C 1.38239 * 119.99781 * 359.46893 * 22 21 20 25 25 C 1.38229 * 119.99713 * 270.02076 * 19 18 17 26 26 H 1.08999 * 109.46732 * 299.99894 * 1 2 3 27 27 H 1.08995 * 109.47497 * 59.99981 * 1 2 3 28 28 H 1.08997 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47223 * 240.00007 * 2 1 3 30 30 H 1.09002 * 109.47803 * 119.99777 * 2 1 3 31 31 H 1.09003 * 109.47231 * 63.97758 * 3 2 1 32 32 H 1.09004 * 109.46901 * 303.97550 * 3 2 1 33 33 H 1.09005 * 109.46549 * 192.24368 * 5 4 3 34 34 H 1.08999 * 109.47205 * 312.23872 * 5 4 3 35 35 H 0.97003 * 119.99663 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46684 * 179.97438 * 16 14 4 37 37 H 1.09001 * 109.46509 * 299.99430 * 16 14 4 38 38 H 1.09000 * 109.47435 * 59.99452 * 16 14 4 39 39 H 1.09008 * 109.47036 * 302.94946 * 17 14 4 40 40 H 1.08998 * 109.47388 * 182.95032 * 17 14 4 41 41 H 1.09003 * 109.46856 * 55.00530 * 18 17 14 42 42 H 1.09003 * 109.46936 * 295.00831 * 18 17 14 43 43 H 1.07995 * 120.00511 * 359.97438 * 20 19 18 44 44 H 1.08001 * 119.99869 * 179.97438 * 21 20 19 45 45 H 1.09005 * 109.46895 * 89.99983 * 23 22 21 46 46 H 1.08993 * 109.47608 * 210.00001 * 23 22 21 47 47 H 1.08998 * 109.47225 * 330.00523 * 23 22 21 48 48 H 1.08004 * 119.99965 * 180.27574 * 24 22 21 49 49 H 1.08006 * 120.00330 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5059 1.4437 -0.0962 5 6 4.0595 2.7399 0.3177 6 6 3.9325 2.8864 1.8121 7 1 3.5517 2.0675 2.4046 8 6 4.3024 4.0657 2.4232 9 7 4.7666 5.0626 1.7018 10 14 4.1443 4.2474 4.2756 11 1 4.9785 3.2185 4.9470 12 1 4.6040 5.6000 4.6813 13 1 2.7242 4.0686 4.6711 14 6 3.9447 1.0929 -1.4534 15 1 3.4052 0.2086 -1.7926 16 6 3.6571 2.2601 -2.4000 17 6 5.4467 0.8017 -1.4445 18 6 5.7258 -0.4116 -0.5552 19 6 7.1861 -0.7735 -0.6429 20 6 8.0916 -0.2108 0.2371 21 6 9.4312 -0.5424 0.1562 22 6 9.8659 -1.4325 -0.8078 23 6 11.3272 -1.7892 -0.9000 24 6 8.9595 -1.9996 -1.6841 25 6 7.6200 -1.6677 -1.6035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.7360 1.9354 0.9235 32 1 1.6196 1.9765 -0.8523 33 1 5.1111 2.7926 0.0355 34 1 3.5107 3.5431 -0.1741 35 1 5.0272 5.8921 2.1318 36 1 3.9831 1.9999 -3.4070 37 1 2.5870 2.4674 -2.4063 38 1 4.1966 3.1444 -2.0609 39 1 5.9824 1.6679 -1.0559 40 1 5.7824 0.5927 -2.4602 41 1 5.1217 -1.2546 -0.8908 42 1 5.4724 -0.1712 0.4773 43 1 7.7527 0.4884 0.9871 44 1 10.1387 -0.1025 0.8435 45 1 11.5303 -2.6550 -0.2695 46 1 11.5791 -2.0255 -1.9337 47 1 11.9292 -0.9453 -0.5631 48 1 9.2985 -2.6985 -2.4345 49 1 6.9124 -2.1074 -2.2910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171673092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:12 Heat of formation + Delta-G solvation = -4.833081 kcal Electronic energy + Delta-G solvation = -23419.706865 eV Core-core repulsion = 20345.318994 eV Total energy + Delta-G solvation = -3074.387871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.30868 -38.03403 -34.50426 -33.16873 -32.65600 -30.78463 -30.69255 -29.15355 -26.96425 -26.26829 -24.60060 -23.04027 -22.47984 -21.98893 -20.91640 -20.25150 -18.36937 -16.55679 -15.82597 -15.44277 -15.07199 -14.82827 -14.78834 -14.43816 -13.77933 -13.56258 -13.45885 -13.23012 -13.07283 -12.90540 -12.79165 -12.24605 -12.16432 -12.00040 -11.97486 -11.65750 -11.57197 -11.23583 -10.98352 -10.93667 -10.85946 -10.82335 -10.61508 -10.52807 -10.33749 -10.14792 -10.05469 -9.96471 -9.38858 -9.14339 -8.70148 -8.37364 -8.21012 -7.09917 -5.98148 -3.98742 1.56148 1.62727 3.34927 3.39265 3.42178 3.96631 4.45346 4.92968 4.94747 4.97246 5.15615 5.23810 5.34274 5.36339 5.42121 5.52797 5.53779 5.56546 5.69876 5.71936 5.74608 5.81180 5.84024 5.94769 5.96702 6.06206 6.11539 6.18434 6.19030 6.26765 6.28659 6.37237 6.37741 6.47185 6.51120 6.66290 6.67963 6.76894 6.77799 6.80896 6.87585 6.91601 7.07692 7.27500 7.37670 7.46963 7.88465 8.20530 8.30194 8.64549 9.10211 9.65297 11.12059 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.004737 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.035371 B = 5909.505980 C = 7520.298962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.060 3.940 4 N -0.527 5.527 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.079 3.921 15 H 0.066 0.934 16 C -0.184 4.184 17 C -0.099 4.099 18 C -0.071 4.071 19 C -0.074 4.074 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.120 4.120 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.020 0.980 33 H 0.030 0.970 34 H -0.005 1.005 35 H 0.260 0.740 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.117 0.883 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.115 0.885 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -12.654 -7.392 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.068 4.068 4 N -0.251 5.251 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.030 4.030 15 H 0.084 0.916 16 C -0.243 4.243 17 C -0.136 4.136 18 C -0.108 4.108 19 C -0.074 4.074 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.104 4.104 23 C -0.167 4.167 24 C -0.142 4.142 25 C -0.138 4.138 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.012 0.988 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.397 -12.814 -7.045 15.270 hybrid contribution -0.358 0.951 0.402 1.092 sum 4.039 -11.864 -6.643 14.184 Atomic orbital electron populations 1.21738 0.96801 1.00691 1.01481 1.21528 0.94192 0.98125 1.01716 1.22022 0.88905 0.94925 1.00964 1.62283 1.07652 1.35060 1.20121 1.19735 0.94859 0.83206 0.95503 1.21161 1.42036 0.98782 0.92195 0.92066 1.24962 0.95636 0.95874 0.98055 1.69950 1.44186 1.04446 1.35365 0.86642 0.78422 0.76983 0.85831 1.20247 1.21491 1.20379 1.21678 0.95342 0.96409 0.89573 0.91566 1.22449 1.01413 1.01061 0.99334 1.21564 0.95711 0.98244 0.98128 1.20522 0.89777 0.97526 1.03022 1.20164 0.96793 0.95667 0.94731 1.21237 0.92815 0.99369 0.99209 1.21029 0.95976 0.98334 0.98412 1.19830 0.95678 0.98187 0.96679 1.20739 0.92366 1.01605 1.02005 1.20926 0.93295 1.00560 0.99462 1.21020 0.95481 0.98660 0.98628 0.92806 0.93368 0.93408 0.92921 0.91697 0.90156 0.96225 0.95187 0.98754 0.93022 0.93536 0.93162 0.91621 0.91060 0.93042 0.92095 0.89031 0.85427 0.86462 0.91630 0.91957 0.91807 0.86745 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.82 6.08 -26.73 -0.16 -1.98 16 3 C 0.06 1.14 4.72 -3.82 -0.02 1.12 16 4 N -0.53 -10.69 3.78 -228.08 -0.86 -11.55 16 5 C 0.19 4.78 3.36 -4.98 -0.02 4.76 16 6 C -0.50 -13.76 8.32 -34.44 -0.29 -14.04 16 7 H 0.06 1.67 7.79 -52.48 -0.41 1.27 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.08 1.37 2.23 -67.71 -0.15 1.22 16 15 H 0.07 1.05 6.42 -51.93 -0.33 0.72 16 16 C -0.18 -3.14 8.47 37.16 0.31 -2.82 16 17 C -0.10 -1.64 4.62 -26.73 -0.12 -1.76 16 18 C -0.07 -1.12 5.15 -27.88 -0.14 -1.27 16 19 C -0.07 -1.11 5.13 -104.62 -0.54 -1.65 16 20 C -0.11 -1.68 9.70 -39.58 -0.38 -2.06 16 21 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 22 C -0.10 -1.30 5.88 -104.62 -0.62 -1.92 16 23 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 24 C -0.12 -1.54 9.70 -39.58 -0.38 -1.93 16 25 C -0.12 -1.60 9.70 -39.59 -0.38 -1.99 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.71 7.14 -51.93 -0.37 1.34 16 32 H 0.02 0.37 6.35 -51.93 -0.33 0.04 16 33 H 0.03 0.80 6.03 -51.93 -0.31 0.49 16 34 H -0.01 -0.15 7.16 -51.93 -0.37 -0.52 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.85 6.58 -51.93 -0.34 0.51 16 38 H 0.06 1.28 6.67 -51.93 -0.35 0.93 16 39 H 0.07 1.38 6.28 -51.92 -0.33 1.05 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.09 1.67 7.78 -51.93 -0.40 1.26 16 43 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 44 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 47 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 48 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 49 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -28.68 382.63 -10.96 -39.63 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.93 Total: 2.48 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -2.64 Total: -27.17 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.13 Total: -37.24 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.68 -10.96 -39.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171673092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.799 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds