Wall clock time and date at job start Tue Mar 31 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47041 * 2 1 4 4 N 1.46905 * 109.47280 * 183.98137 * 3 2 1 5 5 C 1.46899 * 110.99683 * 197.79321 * 4 3 2 6 6 C 1.50697 * 109.47435 * 72.24680 * 5 4 3 7 7 H 1.08008 * 120.00025 * 4.45021 * 6 5 4 8 8 C 1.37875 * 120.00116 * 184.44912 * 6 5 4 9 9 N 1.31516 * 119.99891 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99913 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47115 * 60.00004 * 10 8 6 12 12 H 1.48501 * 109.46830 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47013 * 299.99776 * 10 8 6 14 14 C 1.46894 * 111.00072 * 73.83426 * 4 3 2 15 15 H 1.09000 * 109.47490 * 312.41176 * 14 4 3 16 16 C 1.53003 * 109.46967 * 72.41689 * 14 4 3 17 17 C 1.53003 * 109.46997 * 192.41264 * 14 4 3 18 18 C 1.52999 * 109.47351 * 62.94624 * 17 14 4 19 19 C 1.50703 * 109.47296 * 175.00687 * 18 17 14 20 20 C 1.38236 * 119.99656 * 90.00156 * 19 18 17 21 21 C 1.38234 * 119.99398 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00271 * 0.25460 * 21 20 19 23 23 C 1.50697 * 120.00375 * 179.72173 * 22 21 20 24 24 C 1.38239 * 119.99781 * 359.46893 * 22 21 20 25 25 C 1.38229 * 119.99713 * 270.02076 * 19 18 17 26 26 H 1.08999 * 109.46732 * 299.99894 * 1 2 3 27 27 H 1.08995 * 109.47497 * 59.99981 * 1 2 3 28 28 H 1.08997 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47223 * 240.00007 * 2 1 3 30 30 H 1.09002 * 109.47803 * 119.99777 * 2 1 3 31 31 H 1.09003 * 109.47231 * 63.97758 * 3 2 1 32 32 H 1.09004 * 109.46901 * 303.97550 * 3 2 1 33 33 H 1.09005 * 109.46549 * 192.24368 * 5 4 3 34 34 H 1.08999 * 109.47205 * 312.23872 * 5 4 3 35 35 H 0.97003 * 119.99663 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46684 * 179.97438 * 16 14 4 37 37 H 1.09001 * 109.46509 * 299.99430 * 16 14 4 38 38 H 1.09000 * 109.47435 * 59.99452 * 16 14 4 39 39 H 1.09008 * 109.47036 * 302.94946 * 17 14 4 40 40 H 1.08998 * 109.47388 * 182.95032 * 17 14 4 41 41 H 1.09003 * 109.46856 * 55.00530 * 18 17 14 42 42 H 1.09003 * 109.46936 * 295.00831 * 18 17 14 43 43 H 1.07995 * 120.00511 * 359.97438 * 20 19 18 44 44 H 1.08001 * 119.99869 * 179.97438 * 21 20 19 45 45 H 1.09005 * 109.46895 * 89.99983 * 23 22 21 46 46 H 1.08993 * 109.47608 * 210.00001 * 23 22 21 47 47 H 1.08998 * 109.47225 * 330.00523 * 23 22 21 48 48 H 1.08004 * 119.99965 * 180.27574 * 24 22 21 49 49 H 1.08006 * 120.00330 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5059 1.4437 -0.0962 5 6 4.0595 2.7399 0.3177 6 6 3.9325 2.8864 1.8121 7 1 3.5517 2.0675 2.4046 8 6 4.3024 4.0657 2.4232 9 7 4.7666 5.0626 1.7018 10 14 4.1443 4.2474 4.2756 11 1 4.9785 3.2185 4.9470 12 1 4.6040 5.6000 4.6813 13 1 2.7242 4.0686 4.6711 14 6 3.9447 1.0929 -1.4534 15 1 3.4052 0.2086 -1.7926 16 6 3.6571 2.2601 -2.4000 17 6 5.4467 0.8017 -1.4445 18 6 5.7258 -0.4116 -0.5552 19 6 7.1861 -0.7735 -0.6429 20 6 8.0916 -0.2108 0.2371 21 6 9.4312 -0.5424 0.1562 22 6 9.8659 -1.4325 -0.8078 23 6 11.3272 -1.7892 -0.9000 24 6 8.9595 -1.9996 -1.6841 25 6 7.6200 -1.6677 -1.6035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.7360 1.9354 0.9235 32 1 1.6196 1.9765 -0.8523 33 1 5.1111 2.7926 0.0355 34 1 3.5107 3.5431 -0.1741 35 1 5.0272 5.8921 2.1318 36 1 3.9831 1.9999 -3.4070 37 1 2.5870 2.4674 -2.4063 38 1 4.1966 3.1444 -2.0609 39 1 5.9824 1.6679 -1.0559 40 1 5.7824 0.5927 -2.4602 41 1 5.1217 -1.2546 -0.8908 42 1 5.4724 -0.1712 0.4773 43 1 7.7527 0.4884 0.9871 44 1 10.1387 -0.1025 0.8435 45 1 11.5303 -2.6550 -0.2695 46 1 11.5791 -2.0255 -1.9337 47 1 11.9292 -0.9453 -0.5631 48 1 9.2985 -2.6985 -2.4345 49 1 6.9124 -2.1074 -2.2910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171673092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:12 Heat of formation + Delta-G solvation = -17.814148 kcal Electronic energy + Delta-G solvation = -23420.269767 eV Core-core repulsion = 20345.318994 eV Total energy + Delta-G solvation = -3074.950772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42677 -39.54204 -35.75160 -34.94062 -34.16439 -32.20790 -31.73972 -30.50993 -28.77814 -27.39369 -26.18843 -24.50049 -23.59041 -23.52459 -22.26374 -21.35384 -19.95817 -18.60708 -16.93723 -16.86691 -16.65668 -16.26869 -16.08037 -15.87052 -15.08201 -14.98503 -14.68013 -14.36698 -14.31039 -14.17038 -14.08332 -13.94684 -13.50740 -13.32346 -13.09108 -12.95364 -12.93768 -12.71903 -12.68588 -12.48349 -12.21232 -12.12723 -11.97279 -11.93508 -11.86001 -11.67160 -11.51647 -11.43217 -11.16296 -10.94750 -10.54154 -9.76646 -9.28700 -8.81093 -8.15985 -6.24934 0.50283 0.55998 1.38764 1.41258 1.48979 2.40685 2.89902 3.15594 3.35947 3.84413 3.98666 4.05910 4.13904 4.22008 4.25187 4.27987 4.35995 4.40679 4.52691 4.61073 4.62934 4.66832 4.71325 4.77999 4.84262 4.87511 4.87771 4.92380 4.97997 5.03112 5.04618 5.12714 5.20646 5.23438 5.25519 5.31820 5.32785 5.37244 5.46996 5.50249 5.53048 5.57871 5.60848 5.72040 5.75782 5.90737 6.17072 6.22373 6.50245 6.79558 6.93625 7.44326 8.93485 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.004737 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.035371 B = 5909.505980 C = 7520.298962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.061 3.939 4 N -0.530 5.530 5 C 0.215 3.785 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.078 3.922 15 H 0.095 0.905 16 C -0.177 4.177 17 C -0.091 4.091 18 C -0.060 4.060 19 C -0.092 4.092 20 C -0.135 4.135 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.120 4.120 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.021 0.979 33 H 0.005 0.995 34 H -0.039 1.039 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.146 0.854 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -15.405 -8.587 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.067 4.067 4 N -0.254 5.254 5 C 0.089 3.911 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.784 3.216 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.194 1.194 14 C -0.031 4.031 15 H 0.113 0.887 16 C -0.236 4.236 17 C -0.129 4.129 18 C -0.097 4.097 19 C -0.092 4.092 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.105 4.105 23 C -0.165 4.165 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.023 0.977 34 H -0.021 1.021 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.164 0.836 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.508 -15.583 -8.243 18.196 hybrid contribution -0.350 1.778 0.714 1.948 sum 4.158 -13.805 -7.529 16.265 Atomic orbital electron populations 1.21704 0.94722 1.02262 1.01556 1.21435 0.95901 0.95105 1.02046 1.22043 0.87866 0.97427 0.99396 1.62220 1.08660 1.31887 1.22589 1.19272 0.93119 0.84563 0.94152 1.21476 1.41656 0.98761 0.93548 0.92478 1.25812 0.95208 0.95531 1.02872 1.70084 1.45199 1.04961 1.37338 0.85590 0.78813 0.77098 0.80057 1.19569 1.20974 1.19368 1.21835 0.96037 0.97367 0.87818 0.88679 1.22372 1.00910 0.99454 1.00828 1.21483 0.94808 0.97184 0.99388 1.20347 0.91023 0.97622 1.00710 1.20141 0.96081 0.97038 0.95908 1.21198 0.94271 1.00141 0.99718 1.21209 0.95279 0.99070 0.99411 1.20243 0.97624 0.96963 0.95619 1.20799 0.90025 1.02269 1.03456 1.21332 0.92772 1.00417 0.99649 1.21270 0.96630 0.97743 0.98087 0.93483 0.92636 0.91042 0.91320 0.92524 0.93316 0.96040 0.97695 1.02095 0.92967 0.90433 0.93184 0.95141 0.94937 0.90625 0.89991 0.92522 0.88156 0.85586 0.90356 0.90230 0.91391 0.83601 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.11 -3.15 6.08 30.59 0.19 -2.97 16 3 C 0.06 2.33 4.72 86.30 0.41 2.74 16 4 N -0.53 -22.26 3.78 -875.50 -3.31 -25.57 16 5 C 0.22 11.43 3.36 85.56 0.29 11.72 16 6 C -0.52 -29.64 8.32 25.60 0.21 -29.43 16 7 H 0.06 3.25 7.79 -2.91 -0.02 3.23 16 8 C 0.00 0.19 5.46 84.65 0.46 0.66 16 9 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 10 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 C 0.08 2.68 2.23 44.92 0.10 2.78 16 15 H 0.10 2.77 6.42 -2.39 -0.02 2.76 16 16 C -0.18 -6.06 8.47 71.98 0.61 -5.45 16 17 C -0.09 -3.06 4.62 30.59 0.14 -2.92 16 18 C -0.06 -1.90 5.15 29.85 0.15 -1.75 16 19 C -0.09 -2.78 5.13 -19.87 -0.10 -2.88 16 20 C -0.14 -4.43 9.70 22.27 0.22 -4.21 16 21 C -0.13 -3.65 9.70 22.27 0.22 -3.44 16 22 C -0.10 -2.42 5.88 -19.87 -0.12 -2.53 16 23 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 24 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 25 C -0.12 -2.93 9.70 22.27 0.22 -2.71 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.81 6.56 -2.39 -0.02 1.80 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 2.15 7.14 -2.39 -0.02 2.14 16 32 H 0.02 0.81 6.35 -2.39 -0.02 0.79 16 33 H 0.01 0.29 6.03 -2.38 -0.01 0.28 16 34 H -0.04 -2.27 7.16 -2.39 -0.02 -2.29 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.69 6.58 -2.39 -0.02 1.67 16 38 H 0.03 1.24 6.67 -2.39 -0.02 1.22 16 39 H 0.03 1.34 6.28 -2.38 -0.01 1.32 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 42 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 43 H 0.10 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 45 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 47 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 48 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 49 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -65.79 382.63 4.51 -61.28 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.88 Total: 20.64 kcal Atomic # 6 Polarization: -51.34 SS G_CDS: 4.63 Total: -46.71 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -3.02 Total: -82.62 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -65.79 4.51 -61.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171673092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.467 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds