Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47085 * 2 1 4 4 C 1.52994 * 109.47337 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47260 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99966 * 263.87205 * 5 4 3 7 7 H 1.08003 * 119.99834 * 188.01757 * 6 5 4 8 8 C 1.38815 * 120.00200 * 8.01221 * 6 5 4 9 9 N 1.31622 * 119.99685 * 25.00528 * 8 6 5 10 10 Si 1.86800 * 120.00123 * 204.99793 * 8 6 5 11 11 H 1.48501 * 109.46906 * 84.99169 * 10 8 6 12 12 H 1.48501 * 109.47129 * 204.98855 * 10 8 6 13 13 H 1.48503 * 109.47284 * 324.99014 * 10 8 6 14 14 C 1.46496 * 119.99620 * 83.87085 * 5 4 3 15 15 H 1.08997 * 109.47507 * 0.02562 * 14 5 4 16 16 C 1.53007 * 109.46948 * 120.00042 * 14 5 4 17 17 C 1.53001 * 109.47310 * 239.99760 * 14 5 4 18 18 C 1.53001 * 109.46623 * 65.00113 * 17 14 5 19 19 C 1.50699 * 109.46879 * 180.02562 * 18 17 14 20 20 C 1.38238 * 120.00239 * 269.72812 * 19 18 17 21 21 C 1.38229 * 120.00552 * 179.78852 * 20 19 18 22 22 C 1.38245 * 119.99675 * 0.46451 * 21 20 19 23 23 C 1.50697 * 119.99993 * 179.79268 * 22 21 20 24 24 C 1.38237 * 119.99440 * 359.76573 * 22 21 20 25 25 C 1.38228 * 120.00811 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47228 * 59.99899 * 1 2 3 27 27 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47192 * 300.00071 * 1 2 3 29 29 H 1.08993 * 109.47075 * 240.00106 * 2 1 3 30 30 H 1.09002 * 109.47357 * 119.99345 * 2 1 3 31 31 H 1.09002 * 109.47163 * 59.99911 * 3 2 1 32 32 H 1.08999 * 109.47170 * 300.00136 * 3 2 1 33 33 H 1.09005 * 109.46843 * 60.00477 * 4 3 2 34 34 H 1.08999 * 109.47273 * 300.00283 * 4 3 2 35 35 H 0.97003 * 119.99578 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46645 * 59.99907 * 16 14 5 37 37 H 1.08998 * 109.46928 * 300.00438 * 16 14 5 38 38 H 1.09000 * 109.46953 * 179.97438 * 16 14 5 39 39 H 1.08990 * 109.47333 * 185.00404 * 17 14 5 40 40 H 1.09005 * 109.47179 * 305.00586 * 17 14 5 41 41 H 1.09004 * 109.47626 * 300.00391 * 18 17 14 42 42 H 1.08995 * 109.47054 * 60.00415 * 18 17 14 43 43 H 1.08004 * 119.99523 * 359.97438 * 20 19 18 44 44 H 1.08000 * 120.00473 * 180.25227 * 21 20 19 45 45 H 1.09003 * 109.46663 * 269.97214 * 23 22 21 46 46 H 1.08999 * 109.47302 * 29.97219 * 23 22 21 47 47 H 1.08992 * 109.47135 * 149.97957 * 23 22 21 48 48 H 1.08006 * 119.99347 * 180.02562 * 24 22 21 49 49 H 1.08000 * 120.00434 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.4063 3.4265 -1.1793 7 1 4.8864 4.3939 -1.1702 8 6 4.1422 2.7940 -2.3864 9 7 3.1690 1.9115 -2.4678 10 14 5.1678 3.1953 -3.8952 11 1 6.3988 2.3648 -3.8922 12 1 4.3795 2.9076 -5.1204 13 1 5.5403 4.6327 -3.8725 14 6 4.1741 3.5603 1.2611 15 1 3.8547 2.9223 2.0852 16 6 5.6302 3.9786 1.4755 17 6 3.2882 4.8065 1.2073 18 6 1.8201 4.3850 1.1181 19 6 0.9474 5.6124 1.0645 20 6 0.4698 6.1727 2.2345 21 6 -0.3270 7.3011 2.1856 22 6 -0.6543 7.8638 0.9660 23 6 -1.5269 9.0913 0.9124 24 6 -0.1806 7.3007 -0.2042 25 6 0.6198 6.1748 -0.1551 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9336 0.9287 -0.8892 34 1 3.9329 0.9289 0.8908 35 1 2.9847 1.4692 -3.3112 36 1 5.9500 4.6165 0.6514 37 1 6.2614 3.0908 1.5137 38 1 5.7163 4.5270 2.4136 39 1 3.4416 5.4006 2.1081 40 1 3.5494 5.4005 0.3314 41 1 1.6666 3.7908 0.2172 42 1 1.5588 3.7910 1.9939 43 1 0.7218 5.7304 3.1871 44 1 -0.6968 7.7412 3.0999 45 1 -2.5727 8.7910 0.8481 46 1 -1.3741 9.6853 1.8134 47 1 -1.2650 9.6852 0.0368 48 1 -0.4359 7.7406 -1.1570 49 1 0.9896 5.7347 -1.0694 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171681218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = 17.153945 kcal Electronic energy + Delta-G solvation = -24033.442580 eV Core-core repulsion = 20960.008138 eV Total energy + Delta-G solvation = -3073.434442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.18288 -37.18185 -34.38345 -33.53262 -32.21435 -30.60203 -30.07844 -29.25219 -27.27089 -26.04685 -24.13768 -22.73603 -22.38360 -21.61612 -20.32617 -19.92571 -19.34378 -16.07579 -15.71377 -15.40559 -15.05183 -14.76546 -14.18628 -13.94208 -13.73604 -13.48488 -13.34115 -13.11536 -12.74092 -12.67634 -12.61444 -12.08821 -12.07234 -11.83834 -11.75673 -11.44719 -11.17300 -11.05336 -10.85200 -10.75170 -10.67693 -10.48071 -10.41980 -10.10027 -10.06837 -9.98837 -9.79528 -9.63809 -9.34004 -9.08546 -8.61282 -8.26048 -8.04932 -6.74347 -5.67854 -2.96112 1.66357 1.71809 3.43769 3.51376 3.53050 4.06765 4.57374 5.02239 5.05269 5.27542 5.36015 5.39320 5.43554 5.44379 5.59673 5.77113 5.81266 5.83456 5.85204 5.91688 5.95033 6.03394 6.07218 6.13241 6.26389 6.34251 6.37529 6.47513 6.50147 6.55679 6.56926 6.61518 6.71747 6.77047 6.79690 6.82491 6.85714 6.97040 7.00507 7.07556 7.18734 7.25004 7.26461 7.36565 7.39845 7.78481 7.88246 8.16396 8.45917 9.34683 9.98822 10.44101 11.35790 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.005110 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.037024 B = 5478.364995 C = 5986.260945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.124 4.124 4 C 0.171 3.829 5 N -0.592 5.592 6 C -0.234 4.234 7 H 0.071 0.929 8 C -0.003 4.003 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.292 1.292 12 H -0.295 1.295 13 H -0.285 1.285 14 C 0.171 3.829 15 H 0.049 0.951 16 C -0.154 4.154 17 C -0.114 4.114 18 C -0.081 4.081 19 C -0.067 4.067 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.107 4.107 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.108 4.108 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.098 0.902 33 H 0.089 0.911 34 H -0.002 1.002 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.054 0.946 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.116 0.884 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 6.195 8.138 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.046 3.954 5 N -0.313 5.313 6 C -0.363 4.363 7 H 0.089 0.911 8 C -0.200 4.200 9 N -0.541 5.541 10 Si 0.717 3.283 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.210 1.210 14 C 0.063 3.937 15 H 0.068 0.932 16 C -0.213 4.213 17 C -0.154 4.154 18 C -0.118 4.118 19 C -0.067 4.067 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.107 4.107 23 C -0.166 4.166 24 C -0.138 4.138 25 C -0.126 4.126 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.016 0.984 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.134 0.866 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.573 6.113 7.992 12.019 hybrid contribution 0.458 0.223 -0.873 1.011 sum -6.115 6.336 7.119 11.323 Atomic orbital electron populations 1.21733 0.97621 0.99738 1.01091 1.21417 0.94140 0.99691 1.00120 1.22366 0.98910 0.93697 1.01312 1.20882 0.91842 0.84586 0.98108 1.44234 1.75515 1.10180 1.01343 1.19109 1.30965 1.02740 0.83522 0.91103 1.24607 0.98281 1.00218 0.96855 1.70141 1.27693 1.31659 1.24567 0.86526 0.80808 0.77653 0.83286 1.21940 1.22214 1.21043 1.20310 0.92482 0.91803 0.89110 0.93231 1.22172 0.99001 1.00652 0.99512 1.21952 0.94000 0.99043 1.00389 1.20828 0.93656 0.93571 1.03774 1.20222 0.96593 0.97220 0.92644 1.21032 0.98626 0.96417 0.97936 1.20907 0.99643 0.96853 0.96820 1.19798 0.99764 0.97718 0.93418 1.20724 0.98610 0.95040 1.02214 1.21004 0.98719 0.96729 0.97379 1.21220 0.97445 0.95667 0.98262 0.92967 0.94368 0.93867 0.92364 0.94492 0.95733 0.88346 0.89296 0.98429 0.94057 0.92725 0.93457 0.94573 0.94154 0.91630 0.88011 0.92704 0.86606 0.86851 0.91704 0.92029 0.91917 0.86634 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -2.00 16 2 C -0.12 -2.15 5.93 -26.73 -0.16 -2.30 16 3 C -0.12 -2.60 3.61 -26.73 -0.10 -2.70 16 4 C 0.17 3.89 4.82 -4.04 -0.02 3.87 16 5 N -0.59 -13.54 1.97 -165.66 -0.33 -13.86 16 6 C -0.23 -5.93 8.36 -15.06 -0.13 -6.05 16 7 H 0.07 1.82 6.82 -52.48 -0.36 1.46 16 8 C 0.00 -0.08 4.91 -17.43 -0.09 -0.16 16 9 N -0.89 -23.62 8.61 55.49 0.48 -23.14 16 10 Si 0.89 21.24 29.62 -169.99 -5.04 16.20 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.17 3.34 2.75 -67.93 -0.19 3.16 16 15 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 16 C -0.15 -2.79 9.16 37.16 0.34 -2.45 16 17 C -0.11 -2.11 4.60 -26.73 -0.12 -2.23 16 18 C -0.08 -1.46 4.06 -27.88 -0.11 -1.58 16 19 C -0.07 -1.12 5.13 -104.62 -0.54 -1.66 16 20 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 21 C -0.12 -1.68 9.70 -39.58 -0.38 -2.06 16 22 C -0.11 -1.44 5.88 -104.62 -0.62 -2.05 16 23 C -0.11 -1.10 10.01 36.00 0.36 -0.74 16 24 C -0.12 -1.77 9.70 -39.59 -0.38 -2.15 16 25 C -0.11 -1.82 9.70 -39.58 -0.38 -2.20 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.02 0.49 6.00 -51.93 -0.31 0.18 16 32 H 0.10 2.40 6.05 -51.93 -0.31 2.08 16 33 H 0.09 2.29 5.81 -51.93 -0.30 1.99 16 34 H 0.00 -0.05 8.05 -51.93 -0.42 -0.47 16 35 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.05 1.05 7.13 -51.93 -0.37 0.68 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.35 7.28 -51.93 -0.38 0.97 16 41 H 0.10 2.15 5.34 -51.93 -0.28 1.87 16 42 H 0.05 0.94 7.69 -51.93 -0.40 0.54 16 43 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 44 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 47 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 48 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 49 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -25.86 377.49 -10.73 -36.59 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -9.01 Total: 4.04 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -2.53 Total: -25.51 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.15 Total: -37.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.04 Total: 16.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -25.86 -10.73 -36.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171681218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.742 kcal (2) G-P(sol) polarization free energy of solvation -25.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds