Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47085 * 2 1 4 4 C 1.52994 * 109.47337 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47260 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99966 * 263.87205 * 5 4 3 7 7 H 1.08003 * 119.99834 * 188.01757 * 6 5 4 8 8 C 1.38815 * 120.00200 * 8.01221 * 6 5 4 9 9 N 1.31622 * 119.99685 * 25.00528 * 8 6 5 10 10 Si 1.86800 * 120.00123 * 204.99793 * 8 6 5 11 11 H 1.48501 * 109.46906 * 84.99169 * 10 8 6 12 12 H 1.48501 * 109.47129 * 204.98855 * 10 8 6 13 13 H 1.48503 * 109.47284 * 324.99014 * 10 8 6 14 14 C 1.46496 * 119.99620 * 83.87085 * 5 4 3 15 15 H 1.08997 * 109.47507 * 0.02562 * 14 5 4 16 16 C 1.53007 * 109.46948 * 120.00042 * 14 5 4 17 17 C 1.53001 * 109.47310 * 239.99760 * 14 5 4 18 18 C 1.53001 * 109.46623 * 65.00113 * 17 14 5 19 19 C 1.50699 * 109.46879 * 180.02562 * 18 17 14 20 20 C 1.38238 * 120.00239 * 269.72812 * 19 18 17 21 21 C 1.38229 * 120.00552 * 179.78852 * 20 19 18 22 22 C 1.38245 * 119.99675 * 0.46451 * 21 20 19 23 23 C 1.50697 * 119.99993 * 179.79268 * 22 21 20 24 24 C 1.38237 * 119.99440 * 359.76573 * 22 21 20 25 25 C 1.38228 * 120.00811 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47228 * 59.99899 * 1 2 3 27 27 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47192 * 300.00071 * 1 2 3 29 29 H 1.08993 * 109.47075 * 240.00106 * 2 1 3 30 30 H 1.09002 * 109.47357 * 119.99345 * 2 1 3 31 31 H 1.09002 * 109.47163 * 59.99911 * 3 2 1 32 32 H 1.08999 * 109.47170 * 300.00136 * 3 2 1 33 33 H 1.09005 * 109.46843 * 60.00477 * 4 3 2 34 34 H 1.08999 * 109.47273 * 300.00283 * 4 3 2 35 35 H 0.97003 * 119.99578 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46645 * 59.99907 * 16 14 5 37 37 H 1.08998 * 109.46928 * 300.00438 * 16 14 5 38 38 H 1.09000 * 109.46953 * 179.97438 * 16 14 5 39 39 H 1.08990 * 109.47333 * 185.00404 * 17 14 5 40 40 H 1.09005 * 109.47179 * 305.00586 * 17 14 5 41 41 H 1.09004 * 109.47626 * 300.00391 * 18 17 14 42 42 H 1.08995 * 109.47054 * 60.00415 * 18 17 14 43 43 H 1.08004 * 119.99523 * 359.97438 * 20 19 18 44 44 H 1.08000 * 120.00473 * 180.25227 * 21 20 19 45 45 H 1.09003 * 109.46663 * 269.97214 * 23 22 21 46 46 H 1.08999 * 109.47302 * 29.97219 * 23 22 21 47 47 H 1.08992 * 109.47135 * 149.97957 * 23 22 21 48 48 H 1.08006 * 119.99347 * 180.02562 * 24 22 21 49 49 H 1.08000 * 120.00434 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.4063 3.4265 -1.1793 7 1 4.8864 4.3939 -1.1702 8 6 4.1422 2.7940 -2.3864 9 7 3.1690 1.9115 -2.4678 10 14 5.1678 3.1953 -3.8952 11 1 6.3988 2.3648 -3.8922 12 1 4.3795 2.9076 -5.1204 13 1 5.5403 4.6327 -3.8725 14 6 4.1741 3.5603 1.2611 15 1 3.8547 2.9223 2.0852 16 6 5.6302 3.9786 1.4755 17 6 3.2882 4.8065 1.2073 18 6 1.8201 4.3850 1.1181 19 6 0.9474 5.6124 1.0645 20 6 0.4698 6.1727 2.2345 21 6 -0.3270 7.3011 2.1856 22 6 -0.6543 7.8638 0.9660 23 6 -1.5269 9.0913 0.9124 24 6 -0.1806 7.3007 -0.2042 25 6 0.6198 6.1748 -0.1551 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9336 0.9287 -0.8892 34 1 3.9329 0.9289 0.8908 35 1 2.9847 1.4692 -3.3112 36 1 5.9500 4.6165 0.6514 37 1 6.2614 3.0908 1.5137 38 1 5.7163 4.5270 2.4136 39 1 3.4416 5.4006 2.1081 40 1 3.5494 5.4005 0.3314 41 1 1.6666 3.7908 0.2172 42 1 1.5588 3.7910 1.9939 43 1 0.7218 5.7304 3.1871 44 1 -0.6968 7.7412 3.0999 45 1 -2.5727 8.7910 0.8481 46 1 -1.3741 9.6853 1.8134 47 1 -1.2650 9.6852 0.0368 48 1 -0.4359 7.7406 -1.1570 49 1 0.9896 5.7347 -1.0694 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171681218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = 9.133562 kcal Electronic energy + Delta-G solvation = -24033.790370 eV Core-core repulsion = 20960.008138 eV Total energy + Delta-G solvation = -3073.782232 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36394 -38.84517 -35.88755 -34.97652 -33.85561 -31.74808 -31.68102 -30.64779 -28.97956 -27.21016 -25.95410 -24.09382 -23.53067 -23.23931 -21.78339 -21.35738 -21.02705 -17.97183 -17.14357 -16.84301 -16.39145 -15.92282 -15.82526 -15.65341 -15.29620 -14.90132 -14.58920 -14.27410 -14.19104 -14.04269 -13.98094 -13.47995 -13.43097 -13.25764 -13.04176 -12.94094 -12.73764 -12.65696 -12.48808 -12.28760 -12.15780 -11.99846 -11.89019 -11.76637 -11.66156 -11.54835 -11.46187 -11.19134 -11.06446 -10.86808 -10.17500 -9.76902 -9.25977 -8.62070 -7.67942 -4.95087 0.51296 0.55805 1.47050 1.52016 1.55443 2.60592 2.90725 3.39458 3.70226 3.95530 3.99280 4.13770 4.21900 4.31065 4.39478 4.39779 4.47462 4.59083 4.62087 4.64681 4.72157 4.76995 4.85539 4.87719 4.90395 4.94494 5.03390 5.05655 5.08025 5.12554 5.14566 5.18682 5.27822 5.31804 5.36329 5.39797 5.53102 5.54657 5.58538 5.61562 5.64508 5.69403 5.75224 5.78062 5.93853 6.00413 6.22811 6.34186 6.49133 7.36076 8.09950 8.49308 9.32751 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.005110 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.037024 B = 5478.364995 C = 5986.260945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.106 4.106 4 C 0.174 3.826 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.063 0.937 8 C -0.047 4.047 9 N -0.906 5.906 10 Si 0.933 3.067 11 H -0.296 1.296 12 H -0.303 1.303 13 H -0.283 1.283 14 C 0.164 3.836 15 H 0.062 0.938 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.069 4.069 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.105 4.105 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.133 4.133 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.011 0.989 35 H 0.240 0.760 36 H 0.036 0.964 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.135 0.865 44 H 0.146 0.854 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.128 0.872 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 7.526 10.786 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.146 4.146 4 C 0.049 3.951 5 N -0.322 5.322 6 C -0.357 4.357 7 H 0.081 0.919 8 C -0.242 4.242 9 N -0.554 5.554 10 Si 0.765 3.235 11 H -0.224 1.224 12 H -0.230 1.230 13 H -0.208 1.208 14 C 0.057 3.943 15 H 0.080 0.920 16 C -0.205 4.205 17 C -0.142 4.142 18 C -0.106 4.106 19 C -0.088 4.088 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.105 4.105 23 C -0.164 4.164 24 C -0.147 4.147 25 C -0.151 4.151 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.164 0.836 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.146 0.854 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.627 7.458 10.656 15.078 hybrid contribution 0.770 -0.123 -1.633 1.810 sum -6.857 7.335 9.023 13.500 Atomic orbital electron populations 1.21658 0.95712 1.01243 1.00897 1.21361 0.95837 0.97788 1.00040 1.22077 0.97636 0.95054 0.99793 1.20767 0.92879 0.84475 0.97007 1.44366 1.75544 1.10430 1.01864 1.19168 1.29791 1.02220 0.84550 0.91881 1.25078 0.99340 1.01191 0.98612 1.70300 1.28449 1.32558 1.24138 0.85777 0.79372 0.77256 0.81113 1.22387 1.23046 1.20845 1.20550 0.93731 0.92179 0.87823 0.91984 1.22076 0.97535 1.00450 1.00459 1.21806 0.94090 0.98216 1.00087 1.20599 0.93789 0.94029 1.02229 1.20151 0.97758 0.97370 0.93513 1.21244 0.98398 0.96808 0.97695 1.21312 0.98526 0.96055 0.98122 1.20234 0.99087 0.98387 0.92770 1.20791 0.98445 0.93648 1.03536 1.21198 0.98441 0.96132 0.98946 1.21137 0.99249 0.97209 0.97500 0.94416 0.91994 0.92799 0.94178 0.92738 0.94964 0.91995 0.92546 0.97102 0.95030 0.94476 0.93892 0.91349 0.91683 0.94556 0.91766 0.91683 0.84721 0.83600 0.90435 0.90202 0.91229 0.85407 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.91 71.98 0.71 -3.67 16 2 C -0.11 -4.15 5.93 30.59 0.18 -3.97 16 3 C -0.11 -4.57 3.61 30.59 0.11 -4.46 16 4 C 0.17 8.08 4.82 86.38 0.42 8.49 16 5 N -0.60 -28.04 1.97 -678.02 -1.33 -29.38 16 6 C -0.23 -11.88 8.36 84.04 0.70 -11.18 16 7 H 0.06 3.36 6.82 -2.91 -0.02 3.34 16 8 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 9 N -0.91 -50.23 8.61 21.65 0.19 -50.04 16 10 Si 0.93 45.24 29.62 68.60 2.03 47.28 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 14 C 0.16 6.31 2.75 44.99 0.12 6.43 16 15 H 0.06 2.24 7.88 -2.39 -0.02 2.22 16 16 C -0.15 -5.12 9.16 71.98 0.66 -4.46 16 17 C -0.10 -3.75 4.60 30.59 0.14 -3.61 16 18 C -0.07 -2.52 4.06 29.85 0.12 -2.39 16 19 C -0.09 -2.95 5.13 -19.86 -0.10 -3.05 16 20 C -0.12 -3.39 9.70 22.27 0.22 -3.17 16 21 C -0.12 -2.90 9.70 22.27 0.22 -2.69 16 22 C -0.10 -2.55 5.88 -19.86 -0.12 -2.67 16 23 C -0.11 -1.79 10.01 71.24 0.71 -1.08 16 24 C -0.13 -3.75 9.70 22.27 0.22 -3.53 16 25 C -0.13 -4.65 9.70 22.27 0.22 -4.44 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.31 6.00 -2.39 -0.01 1.29 16 32 H 0.06 3.17 6.05 -2.39 -0.01 3.15 16 33 H 0.06 3.01 5.81 -2.38 -0.01 3.00 16 34 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16 35 H 0.24 13.34 8.31 -92.71 -0.77 12.57 16 36 H 0.04 1.41 7.13 -2.38 -0.02 1.39 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.53 7.28 -2.38 -0.02 1.51 16 41 H 0.06 2.84 5.34 -2.39 -0.01 2.82 16 42 H 0.06 2.17 7.69 -2.39 -0.02 2.15 16 43 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 44 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 47 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 48 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 49 H 0.10 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -58.13 377.49 6.71 -51.42 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.88 Total: 22.29 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 4.94 Total: -41.58 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.15 Total: -79.41 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.28 kcal Total: -58.13 6.71 -51.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171681218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.558 kcal (2) G-P(sol) polarization free energy of solvation -58.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds