Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 C 1.53000 * 109.47563 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00244 * 270.00196 * 5 4 3 7 7 H 1.08007 * 120.00602 * 142.44196 * 6 5 4 8 8 C 1.38813 * 120.00221 * 322.44489 * 6 5 4 9 9 N 1.31627 * 119.99664 * 337.97113 * 8 6 5 10 10 Si 1.86803 * 120.00415 * 157.96387 * 8 6 5 11 11 H 1.48500 * 109.46987 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46740 * 120.00219 * 10 8 6 13 13 H 1.48496 * 109.47177 * 239.99893 * 10 8 6 14 14 C 1.46501 * 119.99968 * 90.00294 * 5 4 3 15 15 H 1.08997 * 109.46900 * 5.39523 * 14 5 4 16 16 C 1.53003 * 109.47001 * 245.39598 * 14 5 4 17 17 C 1.52998 * 109.46971 * 125.39668 * 14 5 4 18 18 C 1.52999 * 109.47224 * 296.96027 * 17 14 5 19 19 C 1.50702 * 109.47348 * 180.02562 * 18 17 14 20 20 C 1.38240 * 119.99479 * 90.00206 * 19 18 17 21 21 C 1.38232 * 119.99253 * 180.02562 * 20 19 18 22 22 C 1.38231 * 120.00541 * 0.25174 * 21 20 19 23 23 C 1.50701 * 120.00081 * 179.72997 * 22 21 20 24 24 C 1.38233 * 119.99799 * 359.46922 * 22 21 20 25 25 C 1.38233 * 120.00067 * 0.53491 * 24 22 21 26 26 H 1.09000 * 109.47279 * 60.00368 * 1 2 3 27 27 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47334 * 299.99515 * 1 2 3 29 29 H 1.09001 * 109.47396 * 240.00010 * 2 1 3 30 30 H 1.09006 * 109.47328 * 120.00083 * 2 1 3 31 31 H 1.09001 * 109.46980 * 59.99756 * 3 2 1 32 32 H 1.09006 * 109.47090 * 300.00229 * 3 2 1 33 33 H 1.09005 * 109.46497 * 60.00066 * 4 3 2 34 34 H 1.08999 * 109.47033 * 300.00643 * 4 3 2 35 35 H 0.96999 * 119.99897 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47105 * 296.25677 * 16 14 5 37 37 H 1.09000 * 109.47071 * 56.25526 * 16 14 5 38 38 H 1.08997 * 109.46938 * 176.25968 * 16 14 5 39 39 H 1.09002 * 109.46963 * 176.96525 * 17 14 5 40 40 H 1.08997 * 109.47466 * 56.96652 * 17 14 5 41 41 H 1.09002 * 109.46744 * 60.00363 * 18 17 14 42 42 H 1.08997 * 109.47409 * 300.00660 * 18 17 14 43 43 H 1.07994 * 120.00341 * 359.97438 * 20 19 18 44 44 H 1.08002 * 119.99498 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.47283 * 90.00117 * 23 22 21 46 46 H 1.09004 * 109.47199 * 210.00219 * 23 22 21 47 47 H 1.08994 * 109.47215 * 330.00009 * 23 22 21 48 48 H 1.08001 * 120.00026 * 180.29646 * 24 22 21 49 49 H 1.08000 * 120.00400 * 179.76733 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2869 3.4697 -1.1843 7 1 4.0535 4.5198 -1.2811 8 6 4.8188 2.7749 -2.2620 9 7 5.4956 1.6643 -2.0596 10 14 4.5737 3.4159 -3.9994 11 1 3.7839 4.6727 -3.9565 12 1 5.8964 3.6839 -4.6192 13 1 3.8468 2.4010 -4.8035 14 6 4.3019 3.5140 1.2703 15 1 4.1579 2.8174 2.0962 16 6 3.3237 4.6819 1.4117 17 6 5.7367 4.0446 1.2949 18 6 6.7158 2.8708 1.2298 19 6 8.1291 3.3934 1.2546 20 6 8.7799 3.5690 2.4615 21 6 10.0761 4.0489 2.4843 22 6 10.7196 4.3582 1.3006 23 6 12.1305 4.8871 1.3259 24 6 10.0708 4.1772 0.0935 25 6 8.7746 3.6973 0.0706 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9286 -0.8892 34 1 3.9329 0.9288 0.8908 35 1 5.8676 1.1790 -2.8125 36 1 3.5122 5.4111 0.6238 37 1 2.3018 4.3121 1.3275 38 1 3.4602 5.1544 2.3844 39 1 5.9013 4.6044 2.2156 40 1 5.8967 4.6993 0.4382 41 1 6.5512 2.3111 0.3090 42 1 6.5558 2.2161 2.0864 43 1 8.2755 3.3320 3.3865 44 1 10.5844 4.1865 3.4272 45 1 12.8317 4.0541 1.2773 46 1 12.2874 5.5446 0.4707 47 1 12.2928 5.4453 2.2478 48 1 10.5752 4.4143 -0.8316 49 1 8.2663 3.5594 -0.8723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171681219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = 3.945178 kcal Electronic energy + Delta-G solvation = -23625.099529 eV Core-core repulsion = 20551.092311 eV Total energy + Delta-G solvation = -3074.007217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.03557 -37.01162 -34.63178 -33.44671 -32.18272 -30.47279 -30.29222 -29.09779 -27.34983 -25.93525 -24.29924 -22.68377 -22.24644 -21.64647 -20.18988 -19.96296 -19.39637 -16.10109 -15.59228 -15.26202 -14.97082 -14.63766 -14.51066 -14.19603 -13.66569 -13.48980 -13.32796 -12.99471 -12.78131 -12.58434 -12.51858 -12.13695 -12.00394 -11.86617 -11.76191 -11.58021 -11.17777 -11.09614 -10.86471 -10.79366 -10.61829 -10.61172 -10.44757 -10.24577 -10.21236 -9.94236 -9.89616 -9.69040 -9.37640 -9.34363 -8.48643 -8.40647 -7.94689 -6.46517 -5.71370 -3.27773 1.79170 1.84793 3.36976 3.46958 3.49310 4.20081 4.52275 5.12099 5.16017 5.29347 5.39241 5.41718 5.49324 5.53891 5.57447 5.67036 5.68923 5.74953 5.89448 5.90397 6.02941 6.08817 6.16599 6.19229 6.24076 6.30217 6.33172 6.42415 6.46929 6.49608 6.55194 6.62129 6.65415 6.68486 6.74954 6.83812 6.92527 6.94529 6.97059 6.99262 7.14796 7.19882 7.33889 7.36428 7.46442 7.62861 7.80467 7.91756 8.60057 9.28191 9.90852 10.50212 11.26723 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.004514 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.340174 B = 6201.366572 C = 7168.161408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.148 3.852 5 N -0.578 5.578 6 C -0.243 4.243 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.884 5.884 10 Si 0.885 3.115 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.290 1.290 14 C 0.167 3.833 15 H 0.044 0.956 16 C -0.155 4.155 17 C -0.104 4.104 18 C -0.083 4.083 19 C -0.061 4.061 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.122 4.122 25 C -0.103 4.103 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.018 0.982 35 H 0.252 0.748 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.047 0.953 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.114 0.886 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 1.656 7.432 8.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.174 4.174 4 C 0.022 3.978 5 N -0.298 5.298 6 C -0.373 4.373 7 H 0.074 0.926 8 C -0.186 4.186 9 N -0.527 5.527 10 Si 0.715 3.285 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.217 1.217 14 C 0.060 3.940 15 H 0.062 0.938 16 C -0.214 4.214 17 C -0.144 4.144 18 C -0.120 4.120 19 C -0.061 4.061 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.110 4.110 23 C -0.165 4.165 24 C -0.141 4.141 25 C -0.121 4.121 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.066 0.934 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.132 0.868 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.917 1.554 7.322 8.448 hybrid contribution -0.159 0.319 -0.988 1.050 sum 3.758 1.873 6.334 7.599 Atomic orbital electron populations 1.21769 0.97137 1.00365 1.01278 1.21484 0.94548 0.98792 1.01174 1.22205 1.00647 0.93943 1.00557 1.20930 0.89163 0.86577 1.01112 1.43858 1.74295 1.11322 1.00335 1.18879 1.35203 0.94911 0.88350 0.92604 1.25048 0.96892 0.98134 0.98477 1.69964 1.34623 1.18513 1.29621 0.86508 0.77485 0.78482 0.85997 1.20344 1.21903 1.21682 1.20441 0.91652 0.92652 0.89234 0.93767 1.22200 0.99992 0.99998 0.99224 1.21772 0.95651 0.97117 0.99810 1.20705 0.88582 0.98133 1.04571 1.20234 0.96941 0.96540 0.92424 1.21040 0.94752 1.00849 0.97642 1.20875 0.95248 1.01258 0.97050 1.19771 0.96331 1.01400 0.93464 1.20712 0.93270 1.00399 1.02097 1.21007 0.95317 1.00829 0.96902 1.21273 0.94149 0.97741 0.98942 0.93127 0.93759 0.93357 0.92437 0.93004 0.94203 0.92589 0.89041 0.96326 0.93832 0.93002 0.93617 0.94737 0.94707 0.91486 0.86563 0.93436 0.86745 0.87007 0.91808 0.91998 0.92119 0.86795 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16 4 C 0.15 3.28 5.28 -4.05 -0.02 3.26 16 5 N -0.58 -13.15 1.73 -165.66 -0.29 -13.44 16 6 C -0.24 -6.14 7.99 -15.06 -0.12 -6.26 16 7 H 0.06 1.46 7.18 -52.48 -0.38 1.09 16 8 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 9 N -0.88 -23.46 11.18 55.49 0.62 -22.84 16 10 Si 0.89 20.95 29.61 -169.99 -5.03 15.92 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 C 0.17 3.35 2.78 -67.93 -0.19 3.16 16 15 H 0.04 0.86 7.76 -51.93 -0.40 0.46 16 16 C -0.15 -2.85 9.19 37.16 0.34 -2.51 16 17 C -0.10 -2.04 4.50 -26.73 -0.12 -2.16 16 18 C -0.08 -1.63 5.21 -27.88 -0.15 -1.78 16 19 C -0.06 -1.12 5.13 -104.62 -0.54 -1.66 16 20 C -0.12 -2.00 9.70 -39.58 -0.38 -2.38 16 21 C -0.13 -1.84 9.70 -39.59 -0.38 -2.22 16 22 C -0.11 -1.59 5.88 -104.63 -0.62 -2.21 16 23 C -0.11 -1.19 10.01 36.01 0.36 -0.82 16 24 C -0.12 -1.96 9.70 -39.59 -0.38 -2.35 16 25 C -0.10 -1.90 9.70 -39.58 -0.38 -2.29 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 2.30 5.54 -51.93 -0.29 2.01 16 34 H 0.02 0.40 7.88 -51.93 -0.41 -0.01 16 35 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.05 1.01 7.35 -51.93 -0.38 0.63 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.46 7.44 -51.93 -0.39 1.07 16 41 H 0.12 2.74 7.31 -51.93 -0.38 2.36 16 42 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 47 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 48 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 49 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -25.76 389.78 -10.79 -36.56 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -9.36 Total: 4.47 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -2.61 Total: -26.54 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.33 Total: -36.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -25.76 -10.79 -36.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171681219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.502 kcal (2) G-P(sol) polarization free energy of solvation -25.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds