Wall clock time and date at job start Tue Mar 31 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 C 1.53000 * 109.47563 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00244 * 270.00196 * 5 4 3 7 7 H 1.08007 * 120.00602 * 142.44196 * 6 5 4 8 8 C 1.38813 * 120.00221 * 322.44489 * 6 5 4 9 9 N 1.31627 * 119.99664 * 337.97113 * 8 6 5 10 10 Si 1.86803 * 120.00415 * 157.96387 * 8 6 5 11 11 H 1.48500 * 109.46987 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46740 * 120.00219 * 10 8 6 13 13 H 1.48496 * 109.47177 * 239.99893 * 10 8 6 14 14 C 1.46501 * 119.99968 * 90.00294 * 5 4 3 15 15 H 1.08997 * 109.46900 * 5.39523 * 14 5 4 16 16 C 1.53003 * 109.47001 * 245.39598 * 14 5 4 17 17 C 1.52998 * 109.46971 * 125.39668 * 14 5 4 18 18 C 1.52999 * 109.47224 * 296.96027 * 17 14 5 19 19 C 1.50702 * 109.47348 * 180.02562 * 18 17 14 20 20 C 1.38240 * 119.99479 * 90.00206 * 19 18 17 21 21 C 1.38232 * 119.99253 * 180.02562 * 20 19 18 22 22 C 1.38231 * 120.00541 * 0.25174 * 21 20 19 23 23 C 1.50701 * 120.00081 * 179.72997 * 22 21 20 24 24 C 1.38233 * 119.99799 * 359.46922 * 22 21 20 25 25 C 1.38233 * 120.00067 * 0.53491 * 24 22 21 26 26 H 1.09000 * 109.47279 * 60.00368 * 1 2 3 27 27 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47334 * 299.99515 * 1 2 3 29 29 H 1.09001 * 109.47396 * 240.00010 * 2 1 3 30 30 H 1.09006 * 109.47328 * 120.00083 * 2 1 3 31 31 H 1.09001 * 109.46980 * 59.99756 * 3 2 1 32 32 H 1.09006 * 109.47090 * 300.00229 * 3 2 1 33 33 H 1.09005 * 109.46497 * 60.00066 * 4 3 2 34 34 H 1.08999 * 109.47033 * 300.00643 * 4 3 2 35 35 H 0.96999 * 119.99897 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47105 * 296.25677 * 16 14 5 37 37 H 1.09000 * 109.47071 * 56.25526 * 16 14 5 38 38 H 1.08997 * 109.46938 * 176.25968 * 16 14 5 39 39 H 1.09002 * 109.46963 * 176.96525 * 17 14 5 40 40 H 1.08997 * 109.47466 * 56.96652 * 17 14 5 41 41 H 1.09002 * 109.46744 * 60.00363 * 18 17 14 42 42 H 1.08997 * 109.47409 * 300.00660 * 18 17 14 43 43 H 1.07994 * 120.00341 * 359.97438 * 20 19 18 44 44 H 1.08002 * 119.99498 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.47283 * 90.00117 * 23 22 21 46 46 H 1.09004 * 109.47199 * 210.00219 * 23 22 21 47 47 H 1.08994 * 109.47215 * 330.00009 * 23 22 21 48 48 H 1.08001 * 120.00026 * 180.29646 * 24 22 21 49 49 H 1.08000 * 120.00400 * 179.76733 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2869 3.4697 -1.1843 7 1 4.0535 4.5198 -1.2811 8 6 4.8188 2.7749 -2.2620 9 7 5.4956 1.6643 -2.0596 10 14 4.5737 3.4159 -3.9994 11 1 3.7839 4.6727 -3.9565 12 1 5.8964 3.6839 -4.6192 13 1 3.8468 2.4010 -4.8035 14 6 4.3019 3.5140 1.2703 15 1 4.1579 2.8174 2.0962 16 6 3.3237 4.6819 1.4117 17 6 5.7367 4.0446 1.2949 18 6 6.7158 2.8708 1.2298 19 6 8.1291 3.3934 1.2546 20 6 8.7799 3.5690 2.4615 21 6 10.0761 4.0489 2.4843 22 6 10.7196 4.3582 1.3006 23 6 12.1305 4.8871 1.3259 24 6 10.0708 4.1772 0.0935 25 6 8.7746 3.6973 0.0706 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9286 -0.8892 34 1 3.9329 0.9288 0.8908 35 1 5.8676 1.1790 -2.8125 36 1 3.5122 5.4111 0.6238 37 1 2.3018 4.3121 1.3275 38 1 3.4602 5.1544 2.3844 39 1 5.9013 4.6044 2.2156 40 1 5.8967 4.6993 0.4382 41 1 6.5512 2.3111 0.3090 42 1 6.5558 2.2161 2.0864 43 1 8.2755 3.3320 3.3865 44 1 10.5844 4.1865 3.4272 45 1 12.8317 4.0541 1.2773 46 1 12.2874 5.5446 0.4707 47 1 12.2928 5.4453 2.2478 48 1 10.5752 4.4143 -0.8316 49 1 8.2663 3.5594 -0.8723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171681219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:15 Heat of formation + Delta-G solvation = -3.786523 kcal Electronic energy + Delta-G solvation = -23625.434800 eV Core-core repulsion = 20551.092311 eV Total energy + Delta-G solvation = -3074.342489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.31745 -38.70015 -36.08682 -34.89090 -33.89404 -31.89263 -31.72760 -30.48574 -29.00937 -27.18548 -26.10353 -24.10225 -23.50433 -23.18315 -21.68291 -21.35765 -21.12973 -18.01344 -17.01807 -16.78415 -16.46121 -16.11318 -15.88560 -15.83103 -15.30487 -14.76677 -14.60957 -14.27489 -14.19569 -14.02341 -13.95774 -13.62922 -13.38577 -13.18681 -13.00061 -12.93136 -12.86060 -12.80338 -12.55443 -12.44897 -12.17198 -12.03045 -11.90333 -11.75612 -11.70402 -11.63507 -11.39687 -11.32132 -11.13019 -11.02324 -10.38648 -9.75525 -9.23193 -8.38300 -7.68362 -5.27704 0.53416 0.57335 1.41739 1.47816 1.54249 2.55709 2.92744 3.35223 3.68918 3.99210 4.02151 4.15468 4.22024 4.23666 4.32321 4.39251 4.45939 4.48883 4.60945 4.68468 4.70919 4.75536 4.81147 4.88084 4.91554 4.96267 5.00501 5.05541 5.05919 5.08703 5.12092 5.13323 5.21100 5.25591 5.31523 5.37822 5.39070 5.49682 5.60675 5.62051 5.65688 5.68744 5.72775 5.75954 5.83191 5.98127 6.04618 6.25748 6.59948 7.31991 8.02759 8.55434 9.24326 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.004514 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.340174 B = 6201.366572 C = 7168.161408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.120 4.120 4 C 0.151 3.849 5 N -0.586 5.586 6 C -0.236 4.236 7 H 0.044 0.956 8 C -0.026 4.026 9 N -0.902 5.902 10 Si 0.931 3.069 11 H -0.276 1.276 12 H -0.297 1.297 13 H -0.293 1.293 14 C 0.161 3.839 15 H 0.056 0.944 16 C -0.145 4.145 17 C -0.093 4.093 18 C -0.072 4.072 19 C -0.084 4.084 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.106 4.106 23 C -0.106 4.106 24 C -0.131 4.131 25 C -0.129 4.129 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.245 0.755 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.126 0.874 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 2.341 9.944 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.160 4.160 4 C 0.025 3.975 5 N -0.307 5.307 6 C -0.367 4.367 7 H 0.062 0.938 8 C -0.223 4.223 9 N -0.547 5.547 10 Si 0.761 3.239 11 H -0.200 1.200 12 H -0.225 1.225 13 H -0.220 1.220 14 C 0.055 3.945 15 H 0.074 0.926 16 C -0.204 4.204 17 C -0.132 4.132 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.144 4.144 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.163 4.163 24 C -0.149 4.149 25 C -0.147 4.147 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.144 0.856 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.520 2.250 9.842 11.062 hybrid contribution -0.276 0.126 -1.703 1.730 sum 4.244 2.375 8.140 9.482 Atomic orbital electron populations 1.21715 0.94846 1.01865 1.01573 1.21440 0.96531 0.96513 1.01163 1.22005 0.98329 0.95904 0.99738 1.20830 0.91003 0.86055 0.99611 1.43984 1.74528 1.11486 1.00705 1.18856 1.33990 0.94384 0.89490 0.93848 1.25496 0.97440 0.98720 1.00666 1.70086 1.35654 1.19384 1.29530 0.85785 0.76851 0.77905 0.83350 1.20044 1.22474 1.22050 1.20637 0.92412 0.93336 0.88157 0.92628 1.22071 0.99198 0.98807 1.00282 1.21647 0.95382 0.96664 0.99503 1.20461 0.90109 0.97841 1.02487 1.20149 0.96428 0.98340 0.93485 1.21249 0.95542 1.00408 0.97151 1.21302 0.94560 0.99583 0.98560 1.20228 0.97951 0.99785 0.92618 1.20782 0.90781 1.01133 1.03577 1.21192 0.94384 1.00693 0.98629 1.21112 0.95644 1.00183 0.97779 0.93569 0.91684 0.92339 0.93652 0.91862 0.93310 0.94885 0.92293 0.96042 0.94572 0.94737 0.93748 0.91690 0.92238 0.94604 0.91058 0.92567 0.84784 0.83446 0.90452 0.91251 0.90090 0.85557 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.82 5.93 30.59 0.18 -3.63 16 3 C -0.12 -4.66 5.54 30.59 0.17 -4.49 16 4 C 0.15 6.86 5.28 86.38 0.46 7.32 16 5 N -0.59 -27.47 1.73 -678.04 -1.17 -28.64 16 6 C -0.24 -12.41 7.99 84.03 0.67 -11.74 16 7 H 0.04 2.38 7.18 -2.91 -0.02 2.35 16 8 C -0.03 -1.38 4.94 84.86 0.42 -0.96 16 9 N -0.90 -50.63 11.18 21.65 0.24 -50.39 16 10 Si 0.93 44.84 29.61 68.60 2.03 46.87 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 14 C 0.16 6.42 2.78 44.99 0.12 6.55 16 15 H 0.06 2.10 7.76 -2.39 -0.02 2.08 16 16 C -0.14 -5.16 9.19 71.98 0.66 -4.50 16 17 C -0.09 -3.67 4.50 30.59 0.14 -3.53 16 18 C -0.07 -2.91 5.21 29.85 0.16 -2.75 16 19 C -0.08 -3.12 5.13 -19.86 -0.10 -3.23 16 20 C -0.13 -3.79 9.70 22.27 0.22 -3.58 16 21 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 22 C -0.11 -2.81 5.88 -19.87 -0.12 -2.93 16 23 C -0.11 -1.94 10.01 71.24 0.71 -1.22 16 24 C -0.13 -4.19 9.70 22.27 0.22 -3.97 16 25 C -0.13 -5.02 9.70 22.27 0.22 -4.80 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 3.11 5.54 -2.38 -0.01 3.10 16 34 H 0.02 0.93 7.88 -2.39 -0.02 0.92 16 35 H 0.24 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.03 1.33 7.35 -2.39 -0.02 1.31 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.04 1.62 7.44 -2.39 -0.02 1.60 16 41 H 0.07 3.58 7.31 -2.39 -0.02 3.56 16 42 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 43 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.18 8.09 -2.38 -0.02 1.16 16 47 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 48 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 49 H 0.09 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -58.81 389.78 7.01 -51.80 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.86 Total: 23.81 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 5.05 Total: -43.45 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -0.93 Total: -79.03 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -58.81 7.01 -51.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171681219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.011 kcal (2) G-P(sol) polarization free energy of solvation -58.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds