Wall clock time and date at job start Tue Mar 31 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 H 1.09002 * 109.47338 * 58.05451 * 3 2 1 5 5 C 1.52996 * 109.47106 * 178.05794 * 3 2 1 6 6 C 1.53003 * 109.46815 * 185.73091 * 5 3 2 7 7 C 1.52999 * 109.47206 * 65.46099 * 6 5 3 8 8 C 1.53001 * 109.46980 * 185.45321 * 6 5 3 9 9 N 1.46905 * 109.46745 * 298.06011 * 3 2 1 10 10 C 1.46900 * 111.00306 * 86.80396 * 9 3 2 11 11 C 1.50695 * 109.46950 * 76.81735 * 10 9 3 12 12 H 1.08007 * 120.00165 * 5.05754 * 11 10 9 13 13 C 1.37879 * 119.99906 * 185.06221 * 11 10 9 14 14 N 1.31512 * 119.99701 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00032 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47249 * 89.99693 * 15 13 11 17 17 H 1.48495 * 109.47050 * 209.99760 * 15 13 11 18 18 H 1.48500 * 109.46933 * 329.99334 * 15 13 11 19 19 C 1.46903 * 110.99681 * 322.84833 * 9 3 2 20 20 C 1.50708 * 109.47055 * 282.99048 * 19 9 3 21 21 C 1.38238 * 119.99726 * 285.62623 * 20 19 9 22 22 C 1.38230 * 119.99529 * 179.76959 * 21 20 19 23 23 C 1.38237 * 119.99961 * 0.50534 * 22 21 20 24 24 C 1.38232 * 120.00041 * 359.74739 * 23 22 21 25 25 C 1.38226 * 120.00293 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46586 * 68.32462 * 1 2 3 27 27 H 1.09004 * 109.47133 * 308.32980 * 1 2 3 28 28 H 1.08995 * 109.47103 * 188.32410 * 1 2 3 29 29 H 1.09003 * 109.46623 * 119.99519 * 2 1 3 30 30 H 1.08990 * 109.47401 * 239.99646 * 2 1 3 31 31 H 1.09001 * 109.47199 * 305.72628 * 5 3 2 32 32 H 1.08994 * 109.47279 * 65.73677 * 5 3 2 33 33 H 1.08992 * 109.47442 * 305.45792 * 6 5 3 34 34 H 1.08998 * 109.47207 * 184.50853 * 7 6 5 35 35 H 1.09005 * 109.47114 * 304.50217 * 7 6 5 36 36 H 1.08995 * 109.47701 * 64.50054 * 7 6 5 37 37 H 1.09010 * 109.46961 * 60.00388 * 8 6 5 38 38 H 1.09000 * 109.47201 * 179.97438 * 8 6 5 39 39 H 1.08992 * 109.47418 * 300.00486 * 8 6 5 40 40 H 1.08993 * 109.47059 * 196.81652 * 10 9 3 41 41 H 1.09004 * 109.46868 * 316.81737 * 10 9 3 42 42 H 0.97002 * 119.99270 * 180.02562 * 14 13 11 43 43 H 1.08998 * 109.47263 * 42.99248 * 19 9 3 44 44 H 1.09002 * 109.46784 * 162.99308 * 19 9 3 45 45 H 1.08001 * 120.00207 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.00176 * 180.23148 * 22 21 20 47 47 H 1.08003 * 119.99991 * 179.72515 * 23 22 21 48 48 H 1.08005 * 119.99950 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00552 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6486 1.9664 0.8720 5 6 3.5693 1.4427 0.0489 6 6 4.0747 2.8796 0.1929 7 6 3.6363 3.4412 1.5469 8 6 5.6021 2.8942 0.1053 9 7 1.5891 2.1213 -1.2223 10 6 0.2529 2.7034 -1.0387 11 6 0.3636 3.9696 -0.2292 12 1 1.3357 4.3521 0.0451 13 6 -0.7763 4.6399 0.1616 14 7 -1.9599 4.1743 -0.1727 15 14 -0.6391 6.2099 1.1645 16 1 -0.5658 7.3771 0.2494 17 1 -1.8300 6.3425 2.0416 18 1 0.5875 6.1580 1.9999 19 6 1.6114 1.2063 -2.3713 20 6 3.0304 1.0339 -2.8487 21 6 3.6515 2.0496 -3.5512 22 6 4.9547 1.8933 -3.9849 23 6 5.6332 0.7172 -3.7251 24 6 5.0103 -0.3004 -3.0271 25 6 3.7092 -0.1420 -2.5884 26 1 -0.3632 0.3796 -0.9550 27 1 -0.3633 0.6374 0.8062 28 1 -0.3633 -1.0168 0.1488 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.9057 0.8521 0.9011 32 1 3.9623 1.0099 -0.8710 33 1 3.6590 3.4929 -0.6065 34 1 3.9266 4.4894 1.6168 35 1 2.5536 3.3570 1.6419 36 1 4.1160 2.8772 2.3468 37 1 5.9146 2.4941 -0.8594 38 1 5.9622 3.9179 0.2075 39 1 6.0178 2.2810 0.9048 40 1 -0.1809 2.9314 -2.0122 41 1 -0.3847 1.9915 -0.5145 42 1 -2.7618 4.6461 0.1019 43 1 1.2083 0.2385 -2.0730 44 1 1.0048 1.6199 -3.1769 45 1 3.1200 2.9668 -3.7577 46 1 5.4413 2.6882 -4.5305 47 1 6.6499 0.5934 -4.0678 48 1 5.5404 -1.2194 -2.8245 49 1 3.2223 -0.9372 -2.0434 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172401795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:40 Heat of formation + Delta-G solvation = 23.512505 kcal Electronic energy + Delta-G solvation = -25197.109968 eV Core-core repulsion = 22123.951254 eV Total energy + Delta-G solvation = -3073.158714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77396 -37.79989 -35.11351 -32.81887 -32.03521 -30.82313 -30.41429 -28.65010 -27.03095 -26.49860 -24.41523 -23.45957 -22.28126 -21.30990 -21.12116 -19.49307 -18.60666 -16.65468 -16.14401 -15.89761 -15.04493 -14.76331 -14.47221 -14.24679 -14.03461 -13.61725 -13.28330 -13.12236 -13.07909 -12.41514 -12.34191 -12.16437 -11.99043 -11.88006 -11.70457 -11.48140 -11.27236 -10.99930 -10.94717 -10.89125 -10.81124 -10.65073 -10.48506 -10.30250 -10.03163 -9.89753 -9.80898 -9.77323 -9.46977 -9.17244 -8.56895 -8.36449 -8.19209 -7.00830 -5.96568 -3.96034 1.66277 1.71561 3.34026 3.40723 3.44332 4.07814 4.47692 5.00735 5.13761 5.18368 5.25222 5.33407 5.37963 5.40300 5.56829 5.58850 5.67608 5.71511 5.78994 5.83212 5.85075 6.00605 6.09304 6.13491 6.16200 6.27057 6.31417 6.34410 6.35893 6.38984 6.42869 6.46826 6.48121 6.51550 6.62297 6.74962 6.78699 6.83452 6.85352 6.93883 7.05141 7.16363 7.19866 7.31008 7.36121 7.50118 7.92979 8.20783 8.31493 8.63859 9.13642 9.67455 11.13209 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.005928 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.896148 B = 4721.920775 C = 5131.763950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.090 3.910 4 H 0.089 0.911 5 C -0.114 4.114 6 C -0.084 4.084 7 C -0.148 4.148 8 C -0.142 4.142 9 N -0.515 5.515 10 C 0.173 3.827 11 C -0.496 4.496 12 H 0.066 0.934 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.273 1.273 19 C 0.069 3.931 20 C -0.049 4.049 21 C -0.095 4.095 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.120 4.120 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.018 0.982 41 H 0.023 0.977 42 H 0.259 0.741 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.173 -8.425 -3.338 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C -0.019 4.019 4 H 0.107 0.893 5 C -0.152 4.152 6 C -0.102 4.102 7 C -0.205 4.205 8 C -0.200 4.200 9 N -0.238 5.238 10 C 0.049 3.951 11 C -0.535 4.535 12 H 0.084 0.916 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.718 3.282 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.198 1.198 19 C -0.059 4.059 20 C -0.049 4.049 21 C -0.114 4.114 22 C -0.140 4.140 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.138 4.138 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.141 0.859 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.131 0.869 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.281 -7.978 -3.400 15.034 hybrid contribution -0.563 0.307 0.791 1.018 sum 11.718 -7.671 -2.609 14.246 Atomic orbital electron populations 1.22040 0.95630 1.00095 1.03300 1.22307 0.96513 0.99671 1.01171 1.21731 0.94160 0.91107 0.94934 0.89294 1.21929 0.95584 0.96353 1.01287 1.20904 0.93523 0.97259 0.98518 1.21907 1.02748 0.99404 0.96440 1.21836 0.97115 1.00407 1.00617 1.62236 1.30325 1.30039 1.01209 1.20195 0.83282 0.94825 0.96844 1.21235 0.92649 1.07490 1.32099 0.91601 1.24945 0.95402 0.97678 0.96570 1.69951 0.97314 1.39792 1.47068 0.86633 0.77419 0.84003 0.80192 1.20867 1.21555 1.19822 1.21374 0.91734 0.97315 0.95435 1.19988 0.96604 0.93054 0.95285 1.21038 0.94545 0.98611 0.97202 1.21090 0.95061 0.97350 1.00540 1.20983 0.99484 0.94287 1.00396 1.20985 0.95224 0.98816 0.99456 1.21026 0.94834 0.97602 1.00340 0.91711 0.91777 0.94353 0.92824 0.91693 0.93927 0.90638 0.89429 0.93917 0.90996 0.94397 0.93329 0.93681 0.93929 0.96353 0.95900 0.93176 0.93065 0.90951 0.85942 0.86777 0.87019 0.86917 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 7.96 37.16 0.30 -2.35 16 2 C -0.16 -2.52 4.87 -26.73 -0.13 -2.65 16 3 C 0.09 1.61 1.70 -67.71 -0.12 1.49 16 4 H 0.09 1.85 5.39 -51.93 -0.28 1.57 16 5 C -0.11 -1.84 4.05 -26.73 -0.11 -1.95 16 6 C -0.08 -1.39 2.87 -90.62 -0.26 -1.65 16 7 C -0.15 -2.53 9.05 37.16 0.34 -2.19 16 8 C -0.14 -2.05 9.19 37.16 0.34 -1.71 16 9 N -0.51 -10.01 3.64 -229.51 -0.84 -10.84 16 10 C 0.17 4.15 4.10 -4.98 -0.02 4.13 16 11 C -0.50 -13.14 8.59 -34.44 -0.30 -13.44 16 12 H 0.07 1.75 7.21 -52.48 -0.38 1.37 16 13 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 14 N -0.90 -25.98 13.29 55.43 0.74 -25.25 16 15 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.07 1.18 4.36 -4.97 -0.02 1.16 16 20 C -0.05 -0.74 3.75 -104.62 -0.39 -1.13 16 21 C -0.10 -1.42 9.74 -39.58 -0.39 -1.81 16 22 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 24 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16 25 C -0.12 -1.62 7.04 -39.59 -0.28 -1.90 16 26 H 0.06 1.20 5.07 -51.93 -0.26 0.94 16 27 H 0.06 1.24 7.52 -51.93 -0.39 0.85 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.96 3.64 -51.93 -0.19 0.77 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.18 3.58 -51.93 -0.19 1.00 16 33 H 0.09 1.70 7.63 -51.93 -0.40 1.30 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.40 5.68 -51.93 -0.29 1.11 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.48 7.56 -51.93 -0.39 0.09 16 41 H 0.02 0.58 4.18 -51.93 -0.22 0.36 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 43 H 0.05 0.84 3.98 -51.93 -0.21 0.63 16 44 H 0.07 1.29 7.56 -51.93 -0.39 0.89 16 45 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 46 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 48 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 49 H 0.12 1.47 6.23 -52.49 -0.33 1.14 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -27.32 361.57 -10.12 -37.44 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.12 Total: 5.34 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -2.32 Total: -28.53 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.10 Total: -36.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.32 -10.12 -37.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172401795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.953 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds