Wall clock time and date at job start Tue Mar 31 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 H 1.09002 * 109.47338 * 58.05451 * 3 2 1 5 5 C 1.52996 * 109.47106 * 178.05794 * 3 2 1 6 6 C 1.53003 * 109.46815 * 185.73091 * 5 3 2 7 7 C 1.52999 * 109.47206 * 65.46099 * 6 5 3 8 8 C 1.53001 * 109.46980 * 185.45321 * 6 5 3 9 9 N 1.46905 * 109.46745 * 298.06011 * 3 2 1 10 10 C 1.46900 * 111.00306 * 86.80396 * 9 3 2 11 11 C 1.50695 * 109.46950 * 76.81735 * 10 9 3 12 12 H 1.08007 * 120.00165 * 5.05754 * 11 10 9 13 13 C 1.37879 * 119.99906 * 185.06221 * 11 10 9 14 14 N 1.31512 * 119.99701 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00032 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47249 * 89.99693 * 15 13 11 17 17 H 1.48495 * 109.47050 * 209.99760 * 15 13 11 18 18 H 1.48500 * 109.46933 * 329.99334 * 15 13 11 19 19 C 1.46903 * 110.99681 * 322.84833 * 9 3 2 20 20 C 1.50708 * 109.47055 * 282.99048 * 19 9 3 21 21 C 1.38238 * 119.99726 * 285.62623 * 20 19 9 22 22 C 1.38230 * 119.99529 * 179.76959 * 21 20 19 23 23 C 1.38237 * 119.99961 * 0.50534 * 22 21 20 24 24 C 1.38232 * 120.00041 * 359.74739 * 23 22 21 25 25 C 1.38226 * 120.00293 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46586 * 68.32462 * 1 2 3 27 27 H 1.09004 * 109.47133 * 308.32980 * 1 2 3 28 28 H 1.08995 * 109.47103 * 188.32410 * 1 2 3 29 29 H 1.09003 * 109.46623 * 119.99519 * 2 1 3 30 30 H 1.08990 * 109.47401 * 239.99646 * 2 1 3 31 31 H 1.09001 * 109.47199 * 305.72628 * 5 3 2 32 32 H 1.08994 * 109.47279 * 65.73677 * 5 3 2 33 33 H 1.08992 * 109.47442 * 305.45792 * 6 5 3 34 34 H 1.08998 * 109.47207 * 184.50853 * 7 6 5 35 35 H 1.09005 * 109.47114 * 304.50217 * 7 6 5 36 36 H 1.08995 * 109.47701 * 64.50054 * 7 6 5 37 37 H 1.09010 * 109.46961 * 60.00388 * 8 6 5 38 38 H 1.09000 * 109.47201 * 179.97438 * 8 6 5 39 39 H 1.08992 * 109.47418 * 300.00486 * 8 6 5 40 40 H 1.08993 * 109.47059 * 196.81652 * 10 9 3 41 41 H 1.09004 * 109.46868 * 316.81737 * 10 9 3 42 42 H 0.97002 * 119.99270 * 180.02562 * 14 13 11 43 43 H 1.08998 * 109.47263 * 42.99248 * 19 9 3 44 44 H 1.09002 * 109.46784 * 162.99308 * 19 9 3 45 45 H 1.08001 * 120.00207 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.00176 * 180.23148 * 22 21 20 47 47 H 1.08003 * 119.99991 * 179.72515 * 23 22 21 48 48 H 1.08005 * 119.99950 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00552 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6486 1.9664 0.8720 5 6 3.5693 1.4427 0.0489 6 6 4.0747 2.8796 0.1929 7 6 3.6363 3.4412 1.5469 8 6 5.6021 2.8942 0.1053 9 7 1.5891 2.1213 -1.2223 10 6 0.2529 2.7034 -1.0387 11 6 0.3636 3.9696 -0.2292 12 1 1.3357 4.3521 0.0451 13 6 -0.7763 4.6399 0.1616 14 7 -1.9599 4.1743 -0.1727 15 14 -0.6391 6.2099 1.1645 16 1 -0.5658 7.3771 0.2494 17 1 -1.8300 6.3425 2.0416 18 1 0.5875 6.1580 1.9999 19 6 1.6114 1.2063 -2.3713 20 6 3.0304 1.0339 -2.8487 21 6 3.6515 2.0496 -3.5512 22 6 4.9547 1.8933 -3.9849 23 6 5.6332 0.7172 -3.7251 24 6 5.0103 -0.3004 -3.0271 25 6 3.7092 -0.1420 -2.5884 26 1 -0.3632 0.3796 -0.9550 27 1 -0.3633 0.6374 0.8062 28 1 -0.3633 -1.0168 0.1488 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.9057 0.8521 0.9011 32 1 3.9623 1.0099 -0.8710 33 1 3.6590 3.4929 -0.6065 34 1 3.9266 4.4894 1.6168 35 1 2.5536 3.3570 1.6419 36 1 4.1160 2.8772 2.3468 37 1 5.9146 2.4941 -0.8594 38 1 5.9622 3.9179 0.2075 39 1 6.0178 2.2810 0.9048 40 1 -0.1809 2.9314 -2.0122 41 1 -0.3847 1.9915 -0.5145 42 1 -2.7618 4.6461 0.1019 43 1 1.2083 0.2385 -2.0730 44 1 1.0048 1.6199 -3.1769 45 1 3.1200 2.9668 -3.7577 46 1 5.4413 2.6882 -4.5305 47 1 6.6499 0.5934 -4.0678 48 1 5.5404 -1.2194 -2.8245 49 1 3.2223 -0.9372 -2.0434 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172401795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:39 Heat of formation + Delta-G solvation = 11.244896 kcal Electronic energy + Delta-G solvation = -25197.641932 eV Core-core repulsion = 22123.951254 eV Total energy + Delta-G solvation = -3073.690678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06210 -39.03919 -36.49343 -34.84361 -33.32203 -32.20540 -31.56679 -30.09023 -28.68181 -27.83759 -25.97324 -24.92447 -23.39529 -23.00054 -22.28846 -20.83088 -20.01989 -18.42784 -17.52281 -17.27893 -16.64952 -16.12936 -15.89018 -15.63866 -15.33100 -15.02469 -14.68975 -14.56080 -14.11212 -13.92371 -13.79959 -13.57743 -13.39261 -13.22014 -13.01715 -12.93019 -12.89785 -12.79600 -12.50601 -12.24897 -12.21780 -12.01616 -11.90899 -11.83652 -11.55431 -11.43232 -11.20814 -11.18189 -11.08731 -10.89873 -10.49402 -9.60440 -9.31578 -8.63396 -8.08966 -6.16079 0.61892 0.67856 1.39098 1.39938 1.50315 2.43320 3.00623 3.21562 3.56755 3.89775 4.06812 4.08620 4.21002 4.28875 4.30842 4.32716 4.39775 4.42870 4.50121 4.56812 4.72928 4.76347 4.83391 4.85728 4.88481 4.93425 5.01550 5.02918 5.08084 5.09862 5.12734 5.18664 5.26634 5.29352 5.30937 5.32977 5.41310 5.48013 5.54607 5.64296 5.69766 5.75278 5.78150 5.83848 5.85850 5.95626 6.24880 6.29073 6.61166 6.83487 7.02758 7.51667 8.98754 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.005928 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.896148 B = 4721.920775 C = 5131.763950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C 0.091 3.909 4 H 0.055 0.945 5 C -0.105 4.105 6 C -0.082 4.082 7 C -0.144 4.144 8 C -0.133 4.133 9 N -0.516 5.516 10 C 0.187 3.813 11 C -0.499 4.499 12 H 0.061 0.939 13 C 0.004 3.996 14 N -0.935 5.935 15 Si 0.949 3.051 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.073 3.927 20 C -0.063 4.063 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.123 4.123 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.058 0.942 40 H -0.015 1.015 41 H 0.011 0.989 42 H 0.259 0.741 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.130 0.870 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.458 -10.057 -2.985 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C -0.018 4.018 4 H 0.073 0.927 5 C -0.143 4.143 6 C -0.100 4.100 7 C -0.201 4.201 8 C -0.190 4.190 9 N -0.239 5.239 10 C 0.062 3.938 11 C -0.538 4.538 12 H 0.079 0.921 13 C -0.193 4.193 14 N -0.577 5.577 15 Si 0.775 3.225 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.055 4.055 20 C -0.064 4.064 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.141 4.141 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.003 0.997 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.119 0.881 46 H 0.148 0.852 47 H 0.160 0.840 48 H 0.161 0.839 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.588 -9.615 -3.050 18.567 hybrid contribution -1.546 0.782 0.625 1.842 sum 14.041 -8.833 -2.425 16.765 Atomic orbital electron populations 1.21928 0.96880 1.00779 1.00872 1.22264 0.95239 0.98518 1.02985 1.21691 0.95652 0.91763 0.92663 0.92694 1.21877 0.93620 0.96318 1.02464 1.20827 0.95386 0.96948 0.96867 1.21851 1.00794 0.99820 0.97642 1.21732 0.94750 1.01123 1.01438 1.62143 1.27214 1.31703 1.02882 1.19853 0.85510 0.94226 0.94243 1.21515 0.92323 1.08263 1.31680 0.92128 1.25697 0.95152 1.00702 0.97780 1.70072 0.97900 1.41225 1.48483 0.85679 0.77561 0.80365 0.78845 1.20504 1.21186 1.19097 1.21325 0.93581 0.96743 0.93805 1.19756 0.95402 0.94420 0.96800 1.20996 0.95778 0.98069 0.98518 1.21292 0.94105 0.98571 1.00276 1.21357 1.00646 0.93335 0.99162 1.21338 0.94491 0.99897 0.98203 1.21138 0.95574 0.96866 1.00512 0.93860 0.94835 0.91669 0.90723 0.89876 0.92211 0.89606 0.92858 0.94091 0.94163 0.92223 0.92953 0.93325 0.92258 0.99724 0.97093 0.93237 0.92210 0.93052 0.88125 0.85169 0.84013 0.83896 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 7.96 71.98 0.57 -4.59 16 2 C -0.15 -4.68 4.87 30.60 0.15 -4.53 16 3 C 0.09 3.30 1.70 44.91 0.08 3.37 16 4 H 0.05 2.38 5.39 -2.39 -0.01 2.37 16 5 C -0.11 -3.23 4.05 30.59 0.12 -3.11 16 6 C -0.08 -2.65 2.87 -10.79 -0.03 -2.68 16 7 C -0.14 -4.87 9.05 71.98 0.65 -4.22 16 8 C -0.13 -3.47 9.19 71.98 0.66 -2.81 16 9 N -0.52 -21.05 3.64 -880.05 -3.21 -24.25 16 10 C 0.19 9.61 4.10 85.56 0.35 9.96 16 11 C -0.50 -27.83 8.59 25.60 0.22 -27.61 16 12 H 0.06 3.38 7.21 -2.91 -0.02 3.36 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 15 Si 0.95 45.23 29.54 68.60 2.03 47.25 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 C 0.07 2.58 4.36 85.56 0.37 2.95 16 20 C -0.06 -1.88 3.75 -19.86 -0.07 -1.96 16 21 C -0.11 -3.43 9.74 22.27 0.22 -3.21 16 22 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 23 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 24 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 25 C -0.12 -2.98 7.04 22.27 0.16 -2.82 16 26 H 0.04 1.68 5.07 -2.39 -0.01 1.67 16 27 H 0.03 1.35 7.52 -2.38 -0.02 1.33 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.08 2.28 3.64 -2.39 -0.01 2.27 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.48 3.58 -2.39 -0.01 2.48 16 33 H 0.05 2.10 7.63 -2.39 -0.02 2.09 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.61 5.68 -2.38 -0.01 1.59 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H -0.02 -0.87 7.56 -2.39 -0.02 -0.89 16 41 H 0.01 0.61 4.18 -2.38 -0.01 0.60 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.06 1.98 3.98 -2.39 -0.01 1.97 16 44 H 0.05 1.98 7.56 -2.39 -0.02 1.96 16 45 H 0.10 3.35 8.06 -2.91 -0.02 3.32 16 46 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 47 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 48 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 49 H 0.13 2.77 6.23 -2.91 -0.02 2.75 16 Total: -1.00 -62.09 361.57 4.60 -57.49 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.91 Total: 23.32 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 4.58 Total: -47.86 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.92 Total: -80.21 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -62.09 4.60 -57.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172401795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.733 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds