Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47207 * 2 1 4 4 H 1.08992 * 109.47038 * 302.26054 * 3 2 1 5 5 C 1.53001 * 109.46948 * 182.25502 * 3 2 1 6 6 C 1.52998 * 109.47142 * 178.65301 * 5 3 2 7 7 C 1.52995 * 109.47316 * 175.08516 * 6 5 3 8 8 C 1.52999 * 109.47287 * 295.09146 * 6 5 3 9 9 N 1.46900 * 109.47086 * 62.26345 * 3 2 1 10 10 C 1.46903 * 111.00087 * 37.57897 * 9 3 2 11 11 C 1.50691 * 109.47005 * 76.24015 * 10 9 3 12 12 H 1.08004 * 120.00105 * 4.23793 * 11 10 9 13 13 C 1.37878 * 120.00382 * 184.24084 * 11 10 9 14 14 N 1.31516 * 119.99594 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00491 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46889 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47033 * 119.99807 * 15 13 11 18 18 H 1.48489 * 109.47365 * 239.99893 * 15 13 11 19 19 C 1.46901 * 110.99482 * 273.62877 * 9 3 2 20 20 C 1.50703 * 109.47346 * 288.22993 * 19 9 3 21 21 C 1.38232 * 119.99752 * 275.14681 * 20 19 9 22 22 C 1.38235 * 119.99708 * 179.76356 * 21 20 19 23 23 C 1.38242 * 119.99772 * 0.50430 * 22 21 20 24 24 C 1.38228 * 119.99871 * 359.74946 * 23 22 21 25 25 C 1.38232 * 120.00548 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47171 * 48.41636 * 1 2 3 27 27 H 1.09000 * 109.47137 * 288.41373 * 1 2 3 28 28 H 1.08999 * 109.47087 * 168.41884 * 1 2 3 29 29 H 1.09004 * 109.46805 * 120.00333 * 2 1 3 30 30 H 1.09003 * 109.46926 * 239.99880 * 2 1 3 31 31 H 1.09000 * 109.47571 * 298.65855 * 5 3 2 32 32 H 1.09007 * 109.46504 * 58.65991 * 5 3 2 33 33 H 1.09005 * 109.46595 * 55.08509 * 6 5 3 34 34 H 1.09001 * 109.46937 * 64.91439 * 7 6 5 35 35 H 1.09002 * 109.47206 * 184.90445 * 7 6 5 36 36 H 1.08998 * 109.47629 * 304.90758 * 7 6 5 37 37 H 1.08995 * 109.47263 * 305.12114 * 8 6 5 38 38 H 1.09001 * 109.47018 * 65.12858 * 8 6 5 39 39 H 1.09009 * 109.47136 * 185.12352 * 8 6 5 40 40 H 1.09001 * 109.46727 * 196.23662 * 10 9 3 41 41 H 1.08993 * 109.47138 * 316.23449 * 10 9 3 42 42 H 0.97003 * 120.00148 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47564 * 48.23505 * 19 9 3 44 44 H 1.09004 * 109.46968 * 168.22927 * 19 9 3 45 45 H 1.07995 * 120.00568 * 359.97438 * 21 20 19 46 46 H 1.08001 * 120.00459 * 180.23305 * 22 21 20 47 47 H 1.07997 * 119.99686 * 179.72425 * 23 22 21 48 48 H 1.08006 * 119.99950 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.00365 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6440 1.9678 -0.8690 5 6 3.5690 1.4428 -0.0568 6 6 4.0778 2.8853 -0.0906 7 6 5.6063 2.8887 -0.0238 8 6 3.6225 3.5564 -1.3881 9 7 1.5955 2.1190 1.2259 10 6 1.6336 1.2048 2.3751 11 6 3.0597 1.0266 2.8282 12 1 3.8503 1.5932 2.3586 13 6 3.3554 0.1403 3.8421 14 7 2.3927 -0.5493 4.4141 15 14 5.1233 -0.0811 4.4032 16 1 6.0101 0.8042 3.6063 17 1 5.2342 0.2728 5.8412 18 1 5.5310 -1.4956 4.2088 19 6 0.2541 2.6926 1.0536 20 6 0.3326 3.8888 0.1404 21 6 0.6562 5.1306 0.6543 22 6 0.7330 6.2269 -0.1842 23 6 0.4760 6.0833 -1.5349 24 6 0.1474 4.8425 -2.0479 25 6 0.0751 3.7453 -1.2102 26 1 -0.3633 0.6820 -0.7686 27 1 -0.3633 0.3246 0.9750 28 1 -0.3633 -1.0067 -0.2063 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.9655 0.9382 0.8243 32 1 3.8993 0.9199 -0.9544 33 1 3.6755 3.4325 0.7620 34 1 6.0102 2.4179 -0.9200 35 1 5.9649 3.9160 0.0400 36 1 5.9327 2.3347 0.8563 37 1 3.9477 2.9589 -2.2397 38 1 2.5354 3.6359 -1.3939 39 1 4.0600 4.5526 -1.4548 40 1 1.0427 1.6217 3.1907 41 1 1.2212 0.2386 2.0846 42 1 2.6006 -1.1726 5.1277 43 1 -0.4076 1.9446 0.6167 44 1 -0.1364 3.0009 2.0235 45 1 0.8523 5.2436 1.7102 46 1 0.9895 7.1964 0.2165 47 1 0.5317 6.9407 -2.1893 48 1 -0.0538 4.7304 -3.1031 49 1 -0.1821 2.7759 -1.6109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172401796.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = 22.313531 kcal Electronic energy + Delta-G solvation = -25203.491899 eV Core-core repulsion = 22130.281194 eV Total energy + Delta-G solvation = -3073.210706 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.54536 -37.95857 -35.03024 -32.72113 -32.23866 -30.68190 -30.38887 -28.44404 -27.18286 -26.51179 -24.54498 -23.01392 -22.43136 -21.86719 -20.67805 -19.43304 -18.40198 -16.66424 -16.23370 -15.70125 -15.03883 -14.92462 -14.49309 -14.24797 -14.00013 -13.63337 -13.28808 -13.15175 -13.03341 -12.39508 -12.27511 -12.12480 -11.90630 -11.77177 -11.62391 -11.44613 -11.37662 -11.02288 -10.93966 -10.90108 -10.82843 -10.50177 -10.46564 -10.36065 -10.08171 -9.92250 -9.76705 -9.56874 -9.25302 -8.89113 -8.60560 -8.41878 -8.32166 -6.99005 -5.97808 -3.96044 1.65587 1.69282 3.31935 3.40610 3.44527 4.06426 4.46763 5.05589 5.14296 5.18989 5.27873 5.36422 5.37864 5.43603 5.64985 5.67134 5.71866 5.76499 5.79778 5.82400 5.90800 6.00582 6.10101 6.12741 6.19633 6.27817 6.32509 6.34170 6.37097 6.42855 6.49706 6.55077 6.55530 6.57746 6.70613 6.73847 6.77846 6.87126 6.96380 7.01669 7.03940 7.26270 7.29331 7.31439 7.44848 7.54151 7.94482 8.21185 8.31960 8.63596 9.12425 9.66289 11.12178 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.005990 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.829506 B = 4673.440109 C = 5145.328964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.162 4.162 3 C 0.098 3.902 4 H 0.062 0.938 5 C -0.113 4.113 6 C -0.084 4.084 7 C -0.145 4.145 8 C -0.145 4.145 9 N -0.516 5.516 10 C 0.177 3.823 11 C -0.495 4.495 12 H 0.074 0.926 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.887 3.113 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.287 1.287 19 C 0.067 3.933 20 C -0.052 4.052 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.018 0.982 41 H 0.021 0.979 42 H 0.258 0.742 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 8.208 -11.594 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C -0.011 4.011 4 H 0.080 0.920 5 C -0.150 4.150 6 C -0.102 4.102 7 C -0.203 4.203 8 C -0.202 4.202 9 N -0.240 5.240 10 C 0.052 3.948 11 C -0.534 4.534 12 H 0.092 0.908 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.715 3.285 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.061 4.061 20 C -0.053 4.053 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.131 0.869 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.913 8.452 -11.342 14.442 hybrid contribution 0.448 -0.867 0.209 0.998 sum -2.465 7.585 -11.133 13.695 Atomic orbital electron populations 1.22022 0.97218 1.00238 1.01379 1.22260 0.95021 0.99847 1.02913 1.21551 0.95564 0.91329 0.92625 0.92035 1.21911 0.94866 0.96101 1.02169 1.20914 0.93791 0.97257 0.98231 1.21847 0.97061 1.00356 1.00986 1.21922 1.01910 0.98941 0.97436 1.62317 1.20409 1.36759 1.04473 1.20069 0.97757 0.90521 0.86459 1.21381 0.93289 1.21754 1.16934 0.90768 1.24965 0.96801 0.96209 0.96704 1.69964 1.31491 1.26948 1.25646 0.86610 0.85561 0.77742 0.78579 1.19573 1.21272 1.21320 1.21492 0.93169 0.93499 0.97910 1.19995 0.96311 0.95148 0.93835 1.21052 0.98423 0.92134 1.00038 1.21086 1.00622 0.98554 0.93773 1.20987 1.01485 0.97141 0.95418 1.21001 1.00989 0.93055 0.99156 1.21027 1.00988 0.98226 0.93416 0.93772 0.91836 0.93781 0.88608 0.93427 0.88162 0.94444 0.89439 0.93963 0.93914 0.92728 0.94359 0.91934 0.94332 0.96425 0.96183 0.93228 0.93071 0.90949 0.86112 0.86757 0.86974 0.86892 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 7.98 37.16 0.30 -2.17 16 2 C -0.16 -2.94 4.87 -26.73 -0.13 -3.07 16 3 C 0.10 1.76 1.60 -67.71 -0.11 1.65 16 4 H 0.06 1.04 4.07 -51.93 -0.21 0.83 16 5 C -0.11 -2.09 3.72 -26.73 -0.10 -2.19 16 6 C -0.08 -1.44 2.63 -90.62 -0.24 -1.68 16 7 C -0.15 -2.35 9.19 37.16 0.34 -2.01 16 8 C -0.14 -2.23 8.82 37.16 0.33 -1.90 16 9 N -0.52 -10.02 3.50 -229.52 -0.80 -10.82 16 10 C 0.18 4.19 3.86 -4.98 -0.02 4.17 16 11 C -0.49 -12.82 7.37 -34.44 -0.25 -13.07 16 12 H 0.07 1.92 5.68 -52.48 -0.30 1.62 16 13 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 14 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.07 1.14 4.65 -4.97 -0.02 1.12 16 20 C -0.05 -0.80 4.56 -104.62 -0.48 -1.27 16 21 C -0.10 -1.44 9.72 -39.58 -0.38 -1.82 16 22 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 23 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 24 C -0.12 -1.53 9.79 -39.59 -0.39 -1.92 16 25 C -0.12 -1.63 6.75 -39.58 -0.27 -1.89 16 26 H 0.04 0.64 6.95 -51.93 -0.36 0.28 16 27 H 0.06 1.13 5.20 -51.93 -0.27 0.86 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 2.09 5.83 -51.93 -0.30 1.79 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 2.16 4.89 -51.93 -0.25 1.91 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.73 7.50 -51.93 -0.39 1.34 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.98 4.39 -51.93 -0.23 0.75 16 39 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.02 0.46 7.64 -51.93 -0.40 0.07 16 41 H 0.02 0.51 4.11 -51.93 -0.21 0.30 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.05 0.84 3.93 -51.93 -0.20 0.64 16 44 H 0.07 1.28 7.66 -51.93 -0.40 0.88 16 45 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 46 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 49 H 0.11 1.50 7.18 -52.49 -0.38 1.13 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -26.94 359.39 -10.10 -37.04 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.11 Total: 5.89 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -2.32 Total: -28.66 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.07 Total: -35.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.94 -10.10 -37.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172401796.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.349 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds