Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47207 * 2 1 4 4 H 1.08992 * 109.47038 * 302.26054 * 3 2 1 5 5 C 1.53001 * 109.46948 * 182.25502 * 3 2 1 6 6 C 1.52998 * 109.47142 * 178.65301 * 5 3 2 7 7 C 1.52995 * 109.47316 * 175.08516 * 6 5 3 8 8 C 1.52999 * 109.47287 * 295.09146 * 6 5 3 9 9 N 1.46900 * 109.47086 * 62.26345 * 3 2 1 10 10 C 1.46903 * 111.00087 * 37.57897 * 9 3 2 11 11 C 1.50691 * 109.47005 * 76.24015 * 10 9 3 12 12 H 1.08004 * 120.00105 * 4.23793 * 11 10 9 13 13 C 1.37878 * 120.00382 * 184.24084 * 11 10 9 14 14 N 1.31516 * 119.99594 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00491 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46889 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47033 * 119.99807 * 15 13 11 18 18 H 1.48489 * 109.47365 * 239.99893 * 15 13 11 19 19 C 1.46901 * 110.99482 * 273.62877 * 9 3 2 20 20 C 1.50703 * 109.47346 * 288.22993 * 19 9 3 21 21 C 1.38232 * 119.99752 * 275.14681 * 20 19 9 22 22 C 1.38235 * 119.99708 * 179.76356 * 21 20 19 23 23 C 1.38242 * 119.99772 * 0.50430 * 22 21 20 24 24 C 1.38228 * 119.99871 * 359.74946 * 23 22 21 25 25 C 1.38232 * 120.00548 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47171 * 48.41636 * 1 2 3 27 27 H 1.09000 * 109.47137 * 288.41373 * 1 2 3 28 28 H 1.08999 * 109.47087 * 168.41884 * 1 2 3 29 29 H 1.09004 * 109.46805 * 120.00333 * 2 1 3 30 30 H 1.09003 * 109.46926 * 239.99880 * 2 1 3 31 31 H 1.09000 * 109.47571 * 298.65855 * 5 3 2 32 32 H 1.09007 * 109.46504 * 58.65991 * 5 3 2 33 33 H 1.09005 * 109.46595 * 55.08509 * 6 5 3 34 34 H 1.09001 * 109.46937 * 64.91439 * 7 6 5 35 35 H 1.09002 * 109.47206 * 184.90445 * 7 6 5 36 36 H 1.08998 * 109.47629 * 304.90758 * 7 6 5 37 37 H 1.08995 * 109.47263 * 305.12114 * 8 6 5 38 38 H 1.09001 * 109.47018 * 65.12858 * 8 6 5 39 39 H 1.09009 * 109.47136 * 185.12352 * 8 6 5 40 40 H 1.09001 * 109.46727 * 196.23662 * 10 9 3 41 41 H 1.08993 * 109.47138 * 316.23449 * 10 9 3 42 42 H 0.97003 * 120.00148 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47564 * 48.23505 * 19 9 3 44 44 H 1.09004 * 109.46968 * 168.22927 * 19 9 3 45 45 H 1.07995 * 120.00568 * 359.97438 * 21 20 19 46 46 H 1.08001 * 120.00459 * 180.23305 * 22 21 20 47 47 H 1.07997 * 119.99686 * 179.72425 * 23 22 21 48 48 H 1.08006 * 119.99950 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.00365 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6440 1.9678 -0.8690 5 6 3.5690 1.4428 -0.0568 6 6 4.0778 2.8853 -0.0906 7 6 5.6063 2.8887 -0.0238 8 6 3.6225 3.5564 -1.3881 9 7 1.5955 2.1190 1.2259 10 6 1.6336 1.2048 2.3751 11 6 3.0597 1.0266 2.8282 12 1 3.8503 1.5932 2.3586 13 6 3.3554 0.1403 3.8421 14 7 2.3927 -0.5493 4.4141 15 14 5.1233 -0.0811 4.4032 16 1 6.0101 0.8042 3.6063 17 1 5.2342 0.2728 5.8412 18 1 5.5310 -1.4956 4.2088 19 6 0.2541 2.6926 1.0536 20 6 0.3326 3.8888 0.1404 21 6 0.6562 5.1306 0.6543 22 6 0.7330 6.2269 -0.1842 23 6 0.4760 6.0833 -1.5349 24 6 0.1474 4.8425 -2.0479 25 6 0.0751 3.7453 -1.2102 26 1 -0.3633 0.6820 -0.7686 27 1 -0.3633 0.3246 0.9750 28 1 -0.3633 -1.0067 -0.2063 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.9655 0.9382 0.8243 32 1 3.8993 0.9199 -0.9544 33 1 3.6755 3.4325 0.7620 34 1 6.0102 2.4179 -0.9200 35 1 5.9649 3.9160 0.0400 36 1 5.9327 2.3347 0.8563 37 1 3.9477 2.9589 -2.2397 38 1 2.5354 3.6359 -1.3939 39 1 4.0600 4.5526 -1.4548 40 1 1.0427 1.6217 3.1907 41 1 1.2212 0.2386 2.0846 42 1 2.6006 -1.1726 5.1277 43 1 -0.4076 1.9446 0.6167 44 1 -0.1364 3.0009 2.0235 45 1 0.8523 5.2436 1.7102 46 1 0.9895 7.1964 0.2165 47 1 0.5317 6.9407 -2.1893 48 1 -0.0538 4.7304 -3.1031 49 1 -0.1821 2.7759 -1.6109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172401796.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = 10.516959 kcal Electronic energy + Delta-G solvation = -25204.003437 eV Core-core repulsion = 22130.281194 eV Total energy + Delta-G solvation = -3073.722243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85783 -39.22450 -36.42861 -34.72676 -33.54651 -31.96431 -31.59394 -29.86761 -28.93011 -27.79463 -26.03166 -24.56128 -23.77155 -23.22737 -21.84754 -20.86231 -19.90675 -18.50865 -17.42565 -17.26405 -16.63406 -16.22285 -15.92972 -15.56112 -15.47235 -14.97636 -14.71670 -14.53934 -14.13820 -13.88185 -13.63981 -13.45931 -13.28962 -13.14654 -13.06887 -12.93812 -12.81544 -12.78205 -12.52169 -12.44841 -12.14061 -12.01466 -11.95218 -11.72212 -11.62341 -11.41654 -11.19306 -11.04218 -10.99990 -10.63889 -10.43791 -9.63013 -9.48039 -8.61318 -8.06889 -6.11225 0.61373 0.66470 1.38836 1.41847 1.52766 2.45117 2.99876 3.24408 3.60125 3.98422 4.04979 4.11391 4.27268 4.29227 4.33623 4.34617 4.40685 4.43909 4.54121 4.55021 4.70578 4.77628 4.84816 4.89287 4.90548 4.91691 4.99690 5.07173 5.09104 5.15496 5.15837 5.22550 5.27749 5.28936 5.32333 5.35500 5.44509 5.48902 5.63885 5.67593 5.72763 5.76234 5.76929 5.88737 5.94155 5.95922 6.26692 6.29935 6.62861 6.84767 7.05924 7.55019 9.01935 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.005990 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.829506 B = 4673.440109 C = 5145.328964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.158 4.158 3 C 0.103 3.897 4 H 0.083 0.917 5 C -0.112 4.112 6 C -0.079 4.079 7 C -0.142 4.142 8 C -0.136 4.136 9 N -0.517 5.517 10 C 0.193 3.807 11 C -0.491 4.491 12 H 0.073 0.927 13 C 0.002 3.998 14 N -0.937 5.937 15 Si 0.945 3.055 16 H -0.264 1.264 17 H -0.287 1.287 18 H -0.284 1.284 19 C 0.069 3.931 20 C -0.067 4.067 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.123 4.123 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.047 0.953 40 H -0.018 1.018 41 H 0.008 0.992 42 H 0.257 0.743 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.105 0.895 46 H 0.133 0.867 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 9.761 -14.878 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C -0.006 4.006 4 H 0.101 0.899 5 C -0.149 4.149 6 C -0.098 4.098 7 C -0.199 4.199 8 C -0.193 4.193 9 N -0.240 5.240 10 C 0.067 3.933 11 C -0.530 4.530 12 H 0.091 0.909 13 C -0.194 4.194 14 N -0.579 5.579 15 Si 0.772 3.228 16 H -0.188 1.188 17 H -0.213 1.213 18 H -0.210 1.210 19 C -0.058 4.058 20 C -0.068 4.068 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.142 4.142 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.000 1.000 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.123 0.877 46 H 0.151 0.849 47 H 0.160 0.840 48 H 0.159 0.841 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.414 10.022 -14.640 17.905 hybrid contribution 0.253 -1.280 1.173 1.755 sum -2.161 8.741 -13.467 16.200 Atomic orbital electron populations 1.21944 0.95762 1.01586 1.00907 1.22177 0.96348 0.99591 1.01607 1.21583 0.95412 0.91277 0.92305 0.89930 1.21846 0.95081 0.96865 1.01145 1.20808 0.94459 0.96073 0.98430 1.21811 0.96228 1.01075 1.00818 1.21819 1.01739 0.99403 0.96344 1.62201 1.22265 1.35566 1.03982 1.19713 0.95958 0.90479 0.87157 1.21669 0.94255 1.20785 1.16243 0.90879 1.25688 1.00272 0.96332 0.97143 1.70086 1.33347 1.27996 1.26479 0.85685 0.81485 0.77706 0.77936 1.18777 1.21284 1.21034 1.21453 0.91848 0.94661 0.97844 1.19776 0.98479 0.94199 0.94335 1.21064 0.99654 0.92976 0.99843 1.21315 1.00030 0.98609 0.94225 1.21364 0.99769 0.98133 0.95216 1.21330 0.99648 0.92466 1.00332 1.21120 1.01023 0.99352 0.92659 0.91341 0.94076 0.92570 0.92983 0.91513 0.91790 0.92779 0.92495 0.92203 0.92588 0.94876 0.92927 0.92183 0.93381 0.99973 0.97475 0.93390 0.92307 0.92885 0.87658 0.84938 0.84012 0.84079 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 7.98 71.98 0.57 -4.07 16 2 C -0.16 -5.75 4.87 30.59 0.15 -5.60 16 3 C 0.10 3.65 1.60 44.92 0.07 3.72 16 4 H 0.08 2.62 4.07 -2.39 -0.01 2.61 16 5 C -0.11 -4.07 3.72 30.59 0.11 -3.96 16 6 C -0.08 -2.65 2.63 -10.80 -0.03 -2.67 16 7 C -0.14 -4.38 9.19 71.98 0.66 -3.72 16 8 C -0.14 -3.76 8.82 71.98 0.63 -3.13 16 9 N -0.52 -20.77 3.50 -880.07 -3.08 -23.85 16 10 C 0.19 9.71 3.86 85.55 0.33 10.04 16 11 C -0.49 -26.58 7.37 25.60 0.19 -26.39 16 12 H 0.07 3.92 5.68 -2.91 -0.02 3.91 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.94 -55.90 13.29 21.45 0.28 -55.61 16 15 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 16 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 19 C 0.07 2.44 4.65 85.56 0.40 2.84 16 20 C -0.07 -2.00 4.56 -19.87 -0.09 -2.10 16 21 C -0.12 -3.39 9.72 22.27 0.22 -3.17 16 22 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 23 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 24 C -0.12 -2.47 9.79 22.27 0.22 -2.25 16 25 C -0.12 -3.06 6.75 22.27 0.15 -2.91 16 26 H 0.07 1.84 6.95 -2.39 -0.02 1.83 16 27 H 0.04 1.50 5.20 -2.39 -0.01 1.48 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 2.37 5.83 -2.38 -0.01 2.35 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.82 4.89 -2.39 -0.01 2.81 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.06 2.26 7.50 -2.38 -0.02 2.24 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.69 4.39 -2.39 -0.01 1.68 16 39 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 40 H -0.02 -1.01 7.64 -2.39 -0.02 -1.03 16 41 H 0.01 0.41 4.11 -2.39 -0.01 0.40 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.06 1.96 3.93 -2.39 -0.01 1.95 16 44 H 0.05 2.02 7.66 -2.38 -0.02 2.00 16 45 H 0.11 3.28 8.06 -2.91 -0.02 3.25 16 46 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 47 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 48 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 49 H 0.12 2.80 7.18 -2.91 -0.02 2.78 16 Total: -1.00 -60.73 359.39 4.65 -56.09 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.92 Total: 24.46 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 4.50 Total: -47.79 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.79 Total: -79.46 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -60.73 4.65 -56.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172401796.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.602 kcal (2) G-P(sol) polarization free energy of solvation -60.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds