Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47343 * 2 1 4 4 C 1.53000 * 109.47496 * 185.00285 * 3 2 1 5 5 C 1.52998 * 109.47398 * 175.64392 * 4 3 2 6 6 N 1.46900 * 109.46928 * 305.00283 * 3 2 1 7 7 C 1.46904 * 111.00022 * 299.30743 * 6 3 2 8 8 H 1.08997 * 109.47024 * 30.96773 * 7 6 3 9 9 C 1.53008 * 109.47074 * 270.97095 * 7 6 3 10 10 C 1.52996 * 109.47119 * 150.97160 * 7 6 3 11 11 C 1.52999 * 109.47399 * 294.99952 * 10 7 6 12 12 C 1.50697 * 109.47390 * 180.02562 * 11 10 7 13 13 H 1.07994 * 119.99852 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00059 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99565 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00001 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47185 * 59.99662 * 16 14 12 18 18 H 1.48504 * 109.47110 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47321 * 299.99576 * 16 14 12 20 20 C 1.50704 * 109.47338 * 64.99921 * 3 2 1 21 21 C 1.38236 * 120.00146 * 239.73218 * 20 3 2 22 22 C 1.38237 * 119.99738 * 179.76459 * 21 20 3 23 23 C 1.38234 * 119.99985 * 0.50695 * 22 21 20 24 24 C 1.38236 * 120.00076 * 359.74126 * 23 22 21 25 25 C 1.38234 * 119.99542 * 59.99938 * 20 3 2 26 26 H 1.08993 * 109.47351 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47021 * 300.00082 * 1 2 3 28 28 H 1.09004 * 109.46969 * 59.99733 * 1 2 3 29 29 H 1.09004 * 109.47021 * 239.99918 * 2 1 3 30 30 H 1.09003 * 109.47283 * 119.99825 * 2 1 3 31 31 H 1.09004 * 109.46574 * 295.64143 * 4 3 2 32 32 H 1.08995 * 109.46995 * 55.63943 * 4 3 2 33 33 H 1.08996 * 109.47229 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47097 * 299.99996 * 5 4 3 35 35 H 1.09004 * 109.47244 * 59.99660 * 5 4 3 36 36 H 1.00904 * 111.00531 * 63.26114 * 6 3 2 37 37 H 1.09000 * 109.46992 * 68.05638 * 9 7 6 38 38 H 1.08995 * 109.46931 * 188.05227 * 9 7 6 39 39 H 1.08995 * 109.47183 * 308.05704 * 9 7 6 40 40 H 1.09003 * 109.47476 * 55.00353 * 10 7 6 41 41 H 1.09005 * 109.46918 * 175.00088 * 10 7 6 42 42 H 1.09003 * 109.47134 * 300.00611 * 11 10 7 43 43 H 1.09005 * 109.46974 * 60.00170 * 11 10 7 44 44 H 0.97009 * 119.99256 * 180.02562 * 15 14 12 45 45 H 1.07995 * 119.99816 * 359.97438 * 21 20 3 46 46 H 1.07997 * 119.99731 * 180.22595 * 22 21 20 47 47 H 1.07998 * 119.99803 * 179.72615 * 23 22 21 48 48 H 1.07999 * 120.00011 * 179.97438 * 24 23 22 49 49 H 1.07995 * 120.00267 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 -0.1258 5 6 4.0659 2.8858 -0.2351 6 7 1.4543 2.1689 -1.1345 7 6 1.8359 1.5488 -2.4104 8 1 1.9666 0.4760 -2.2681 9 6 3.1485 2.1616 -2.9028 10 6 0.7374 1.7959 -3.4462 11 6 -0.5424 1.0775 -3.0139 12 6 -1.6241 1.3204 -4.0345 13 1 -1.4195 1.9268 -4.9043 14 6 -2.8755 0.7692 -3.8573 15 7 -3.1248 0.0311 -2.7977 16 14 -4.2166 1.0709 -5.1220 17 1 -3.7786 0.5497 -6.4418 18 1 -5.4587 0.3735 -4.7024 19 1 -4.4785 2.5288 -5.2277 20 6 1.6414 2.1163 1.2877 21 6 0.8449 3.2458 1.2590 22 6 0.4753 3.8610 2.4405 23 6 0.9108 3.3528 3.6500 24 6 1.7115 2.2264 3.6784 25 6 2.0768 1.6081 2.4972 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0026 0.9733 0.7544 32 1 3.8565 0.8897 -1.0176 33 1 5.1522 2.8872 -0.3242 34 1 3.6282 3.3569 -1.1152 35 1 3.7742 3.4405 0.6568 36 1 0.4508 2.2278 -1.0470 37 1 3.9600 1.8647 -2.2383 38 1 3.3581 1.8084 -3.9125 39 1 3.0627 3.2481 -2.9084 40 1 0.5450 2.8660 -3.5236 41 1 1.0590 1.4136 -4.4151 42 1 -0.3499 0.0074 -2.9365 43 1 -0.8640 1.4598 -2.0450 44 1 -4.0051 -0.3570 -2.6732 45 1 0.5087 3.6455 0.3138 46 1 -0.1500 4.7412 2.4182 47 1 0.6256 3.8361 4.5728 48 1 2.0521 1.8296 4.6234 49 1 2.7030 0.7285 2.5194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = 18.616578 kcal Electronic energy + Delta-G solvation = -24775.569010 eV Core-core repulsion = 21702.197992 eV Total energy + Delta-G solvation = -3073.371018 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27431 -37.88212 -34.63627 -32.85179 -32.20191 -30.87647 -30.17904 -29.64718 -28.53552 -25.67848 -24.98684 -22.91119 -22.04124 -21.80047 -21.26634 -19.80671 -18.50710 -17.09521 -16.37151 -15.70783 -15.32094 -14.76591 -14.62306 -14.46487 -14.16269 -13.86805 -13.42559 -13.09078 -12.77077 -12.58304 -12.44773 -12.40911 -12.27654 -12.11844 -11.78082 -11.40198 -11.26382 -11.19724 -11.08857 -10.91577 -10.80872 -10.64403 -10.51997 -10.44004 -10.33274 -10.11279 -10.01800 -9.67736 -9.16774 -8.94205 -8.70674 -8.46476 -8.34846 -7.87109 -6.01150 -4.03028 1.57018 1.62282 3.32649 3.37356 3.39857 3.99852 4.45343 4.50819 4.83628 5.03515 5.13988 5.18539 5.31932 5.34261 5.35464 5.49882 5.56766 5.61041 5.72536 5.75036 5.77652 5.84212 5.89258 6.00272 6.05091 6.09454 6.17506 6.18811 6.27365 6.31811 6.35863 6.47496 6.49720 6.54798 6.55518 6.60447 6.68126 6.73079 6.75402 6.85541 6.96161 7.00957 7.11867 7.21454 7.60167 7.61845 7.81075 7.92553 7.98269 8.42600 9.02627 9.61085 11.09377 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.004919 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.083280 B = 5690.880640 C = 6544.445108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.145 4.145 3 C 0.155 3.845 4 C -0.109 4.109 5 C -0.151 4.151 6 N -0.673 5.673 7 C 0.078 3.922 8 H 0.048 0.952 9 C -0.153 4.153 10 C -0.118 4.118 11 C 0.019 3.981 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.050 4.050 21 C -0.102 4.102 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.353 0.647 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.260 0.740 45 H 0.134 0.866 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.594 3.812 10.303 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.184 4.184 3 C 0.063 3.937 4 C -0.147 4.147 5 C -0.208 4.208 6 N -0.308 5.308 7 C -0.031 4.031 8 H 0.065 0.935 9 C -0.210 4.210 10 C -0.156 4.156 11 C -0.017 4.017 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.050 4.050 21 C -0.120 4.120 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.177 0.823 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.152 0.848 46 H 0.136 0.864 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.934 4.188 10.351 17.087 hybrid contribution -1.479 -0.811 -0.519 1.764 sum 11.456 3.377 9.832 15.469 Atomic orbital electron populations 1.22196 0.94237 1.02672 1.04161 1.22210 0.97796 0.96800 1.01568 1.19797 0.94352 0.90893 0.88640 1.21756 0.93381 0.98180 1.01351 1.21914 0.98869 0.96458 1.03517 1.60867 1.17196 1.52267 1.00462 1.21646 0.95450 0.96488 0.89532 0.93454 1.22361 0.97506 1.01301 0.99860 1.21881 0.95817 1.01057 0.96845 1.19286 0.90805 0.95269 0.96375 1.21196 0.95961 1.31327 1.07471 0.92833 1.24991 0.98559 0.95183 0.95487 1.69943 1.22188 1.33604 1.27411 0.86700 0.81286 0.78371 0.81883 1.20347 1.21362 1.20274 1.19702 0.96412 0.95083 0.93808 1.21185 0.97018 0.95159 0.98622 1.21164 1.00062 1.00118 0.92648 1.21052 0.99147 0.97103 0.97709 1.21003 0.99153 0.96462 0.97688 1.20896 1.00784 0.99993 0.92065 0.93029 0.93514 0.88563 0.91514 0.92515 0.92578 0.91102 0.94310 0.89947 0.93326 0.82328 0.91865 0.93600 0.92295 0.92630 0.92833 0.96706 0.95991 0.93007 0.84845 0.86447 0.86794 0.86723 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 9.27 37.16 0.34 -2.82 16 2 C -0.14 -2.19 4.49 -26.73 -0.12 -2.31 16 3 C 0.15 2.18 0.24 -132.75 -0.03 2.15 16 4 C -0.11 -1.37 4.20 -26.73 -0.11 -1.48 16 5 C -0.15 -1.85 8.43 37.16 0.31 -1.54 16 6 N -0.67 -10.52 4.04 -94.20 -0.38 -10.90 16 7 C 0.08 1.27 1.93 -67.71 -0.13 1.14 16 8 H 0.05 0.81 5.46 -51.93 -0.28 0.53 16 9 C -0.15 -2.13 7.57 37.16 0.28 -1.85 16 10 C -0.12 -2.34 4.71 -26.73 -0.13 -2.46 16 11 C 0.02 0.47 3.50 -27.88 -0.10 0.37 16 12 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 C -0.05 -0.69 2.70 -104.62 -0.28 -0.98 16 21 C -0.10 -1.47 9.15 -39.58 -0.36 -1.83 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.13 -1.58 10.05 -39.58 -0.40 -1.97 16 24 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 25 C -0.12 -1.52 8.61 -39.58 -0.34 -1.87 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.82 7.38 -51.93 -0.38 0.44 16 28 H 0.10 1.98 2.75 -51.93 -0.14 1.84 16 29 H 0.07 1.04 6.21 -51.93 -0.32 0.72 16 30 H 0.06 0.78 7.23 -51.93 -0.38 0.40 16 31 H 0.06 0.65 7.25 -51.93 -0.38 0.27 16 32 H 0.07 0.89 5.49 -51.93 -0.29 0.61 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 1.09 4.70 -51.93 -0.24 0.84 16 35 H 0.05 0.63 7.36 -51.93 -0.38 0.25 16 36 H 0.35 6.30 4.07 -39.29 -0.16 6.14 16 37 H 0.06 0.80 3.90 -51.93 -0.20 0.59 16 38 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.06 0.83 7.31 -51.93 -0.38 0.45 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 42 H 0.01 0.39 7.95 -51.93 -0.41 -0.03 16 43 H 0.02 0.56 4.75 -51.93 -0.25 0.31 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.13 2.01 6.43 -52.49 -0.34 1.67 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 47 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.12 1.33 7.04 -52.49 -0.37 0.96 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -27.97 353.86 -9.43 -37.40 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.83 Total: 9.35 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -2.27 Total: -32.39 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.36 Total: -36.13 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.97 -9.43 -37.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.012 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds