Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47343 * 2 1 4 4 C 1.53000 * 109.47496 * 185.00285 * 3 2 1 5 5 C 1.52998 * 109.47398 * 175.64392 * 4 3 2 6 6 N 1.46900 * 109.46928 * 305.00283 * 3 2 1 7 7 C 1.46904 * 111.00022 * 299.30743 * 6 3 2 8 8 H 1.08997 * 109.47024 * 30.96773 * 7 6 3 9 9 C 1.53008 * 109.47074 * 270.97095 * 7 6 3 10 10 C 1.52996 * 109.47119 * 150.97160 * 7 6 3 11 11 C 1.52999 * 109.47399 * 294.99952 * 10 7 6 12 12 C 1.50697 * 109.47390 * 180.02562 * 11 10 7 13 13 H 1.07994 * 119.99852 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00059 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99565 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00001 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47185 * 59.99662 * 16 14 12 18 18 H 1.48504 * 109.47110 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47321 * 299.99576 * 16 14 12 20 20 C 1.50704 * 109.47338 * 64.99921 * 3 2 1 21 21 C 1.38236 * 120.00146 * 239.73218 * 20 3 2 22 22 C 1.38237 * 119.99738 * 179.76459 * 21 20 3 23 23 C 1.38234 * 119.99985 * 0.50695 * 22 21 20 24 24 C 1.38236 * 120.00076 * 359.74126 * 23 22 21 25 25 C 1.38234 * 119.99542 * 59.99938 * 20 3 2 26 26 H 1.08993 * 109.47351 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47021 * 300.00082 * 1 2 3 28 28 H 1.09004 * 109.46969 * 59.99733 * 1 2 3 29 29 H 1.09004 * 109.47021 * 239.99918 * 2 1 3 30 30 H 1.09003 * 109.47283 * 119.99825 * 2 1 3 31 31 H 1.09004 * 109.46574 * 295.64143 * 4 3 2 32 32 H 1.08995 * 109.46995 * 55.63943 * 4 3 2 33 33 H 1.08996 * 109.47229 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47097 * 299.99996 * 5 4 3 35 35 H 1.09004 * 109.47244 * 59.99660 * 5 4 3 36 36 H 1.00904 * 111.00531 * 63.26114 * 6 3 2 37 37 H 1.09000 * 109.46992 * 68.05638 * 9 7 6 38 38 H 1.08995 * 109.46931 * 188.05227 * 9 7 6 39 39 H 1.08995 * 109.47183 * 308.05704 * 9 7 6 40 40 H 1.09003 * 109.47476 * 55.00353 * 10 7 6 41 41 H 1.09005 * 109.46918 * 175.00088 * 10 7 6 42 42 H 1.09003 * 109.47134 * 300.00611 * 11 10 7 43 43 H 1.09005 * 109.46974 * 60.00170 * 11 10 7 44 44 H 0.97009 * 119.99256 * 180.02562 * 15 14 12 45 45 H 1.07995 * 119.99816 * 359.97438 * 21 20 3 46 46 H 1.07997 * 119.99731 * 180.22595 * 22 21 20 47 47 H 1.07998 * 119.99803 * 179.72615 * 23 22 21 48 48 H 1.07999 * 120.00011 * 179.97438 * 24 23 22 49 49 H 1.07995 * 120.00267 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 -0.1258 5 6 4.0659 2.8858 -0.2351 6 7 1.4543 2.1689 -1.1345 7 6 1.8359 1.5488 -2.4104 8 1 1.9666 0.4760 -2.2681 9 6 3.1485 2.1616 -2.9028 10 6 0.7374 1.7959 -3.4462 11 6 -0.5424 1.0775 -3.0139 12 6 -1.6241 1.3204 -4.0345 13 1 -1.4195 1.9268 -4.9043 14 6 -2.8755 0.7692 -3.8573 15 7 -3.1248 0.0311 -2.7977 16 14 -4.2166 1.0709 -5.1220 17 1 -3.7786 0.5497 -6.4418 18 1 -5.4587 0.3735 -4.7024 19 1 -4.4785 2.5288 -5.2277 20 6 1.6414 2.1163 1.2877 21 6 0.8449 3.2458 1.2590 22 6 0.4753 3.8610 2.4405 23 6 0.9108 3.3528 3.6500 24 6 1.7115 2.2264 3.6784 25 6 2.0768 1.6081 2.4972 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0026 0.9733 0.7544 32 1 3.8565 0.8897 -1.0176 33 1 5.1522 2.8872 -0.3242 34 1 3.6282 3.3569 -1.1152 35 1 3.7742 3.4405 0.6568 36 1 0.4508 2.2278 -1.0470 37 1 3.9600 1.8647 -2.2383 38 1 3.3581 1.8084 -3.9125 39 1 3.0627 3.2481 -2.9084 40 1 0.5450 2.8660 -3.5236 41 1 1.0590 1.4136 -4.4151 42 1 -0.3499 0.0074 -2.9365 43 1 -0.8640 1.4598 -2.0450 44 1 -4.0051 -0.3570 -2.6732 45 1 0.5087 3.6455 0.3138 46 1 -0.1500 4.7412 2.4182 47 1 0.6256 3.8361 4.5728 48 1 2.0521 1.8296 4.6234 49 1 2.7030 0.7285 2.5194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = 5.989233 kcal Electronic energy + Delta-G solvation = -24776.116573 eV Core-core repulsion = 21702.197992 eV Total energy + Delta-G solvation = -3073.918580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40361 -38.99916 -36.18301 -34.64256 -33.47942 -31.95855 -31.43140 -31.06971 -29.81652 -26.93778 -26.79475 -24.05258 -23.24445 -23.02881 -22.68518 -21.18612 -19.68680 -18.60649 -18.00450 -16.89884 -16.58514 -16.50079 -15.86611 -15.62520 -15.35318 -15.22765 -14.61377 -14.38881 -14.17048 -13.98175 -13.94222 -13.63388 -13.53521 -13.30132 -13.22852 -12.87527 -12.82319 -12.57137 -12.43249 -12.39838 -12.19182 -12.03253 -11.87895 -11.76599 -11.70020 -11.47681 -11.26031 -11.14404 -10.99366 -10.79287 -10.48398 -9.69505 -9.48235 -9.13162 -8.16792 -6.26244 0.58640 0.63235 1.39437 1.40975 1.48726 2.41631 3.00377 3.15857 3.28430 3.73673 3.92865 4.11178 4.20821 4.24520 4.26675 4.33021 4.39928 4.45679 4.50523 4.54082 4.60912 4.66894 4.78224 4.81906 4.85155 4.90495 4.99881 5.05456 5.09452 5.12816 5.14399 5.20317 5.23532 5.24830 5.30091 5.33803 5.44492 5.49458 5.54250 5.59331 5.70136 5.73386 5.75493 5.77787 5.86776 5.89078 6.23608 6.31487 6.42317 6.53502 6.89394 7.41922 8.92968 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.004919 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.083280 B = 5690.880640 C = 6544.445108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 C 0.157 3.843 4 C -0.106 4.106 5 C -0.144 4.144 6 N -0.669 5.669 7 C 0.086 3.914 8 H 0.040 0.960 9 C -0.144 4.144 10 C -0.108 4.108 11 C 0.032 3.968 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.007 3.993 15 N -0.923 5.923 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.060 4.060 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.126 4.126 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.338 0.662 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.052 0.948 42 H -0.013 1.013 43 H 0.011 0.989 44 H 0.261 0.739 45 H 0.116 0.884 46 H 0.128 0.872 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.996 4.209 11.156 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.177 4.177 3 C 0.066 3.934 4 C -0.144 4.144 5 C -0.201 4.201 6 N -0.302 5.302 7 C -0.024 4.024 8 H 0.058 0.942 9 C -0.201 4.201 10 C -0.146 4.146 11 C -0.005 4.005 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.191 4.191 15 N -0.563 5.563 16 Si 0.780 3.220 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.060 4.060 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.145 4.145 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.159 0.841 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.005 0.995 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.134 0.866 46 H 0.146 0.854 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.360 4.593 11.196 18.779 hybrid contribution -1.947 -0.935 -0.724 2.278 sum 12.413 3.658 10.472 16.647 Atomic orbital electron populations 1.22067 0.96644 1.01239 1.02618 1.22161 0.95390 0.97956 1.02168 1.19848 0.95460 0.89810 0.88290 1.21754 0.91788 0.98615 1.02203 1.21838 0.99873 0.95867 1.02571 1.60952 1.16071 1.52368 1.00781 1.21539 0.95388 0.96403 0.89032 0.94235 1.22288 0.96276 1.01071 1.00504 1.21726 0.95027 0.99952 0.97858 1.19106 0.92258 0.93826 0.95319 1.21668 0.97202 1.31265 1.08131 0.92856 1.25821 1.00953 0.94922 0.97413 1.70075 1.22677 1.34484 1.29106 0.85662 0.78309 0.78540 0.79489 1.19542 1.20999 1.19461 1.19704 0.96968 0.95217 0.94142 1.21179 0.98229 0.96174 0.98620 1.21378 1.00311 1.00594 0.92740 1.21382 0.98548 0.97108 0.98154 1.21366 0.98347 0.96046 0.98507 1.21118 1.00956 1.00538 0.91857 0.94299 0.93706 0.91327 0.92097 0.90551 0.90968 0.90921 0.92533 0.91024 0.94192 0.84074 0.90037 0.92995 0.92286 0.93033 0.92955 0.99494 0.97140 0.93038 0.86563 0.85382 0.84320 0.84020 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.31 9.27 71.98 0.67 -5.64 16 2 C -0.14 -4.13 4.49 30.59 0.14 -4.00 16 3 C 0.16 4.34 0.24 2.78 0.00 4.35 16 4 C -0.11 -2.44 4.20 30.59 0.13 -2.31 16 5 C -0.14 -3.25 8.43 71.98 0.61 -2.65 16 6 N -0.67 -21.26 4.04 -451.96 -1.82 -23.08 16 7 C 0.09 2.81 1.93 44.92 0.09 2.90 16 8 H 0.04 1.37 5.46 -2.39 -0.01 1.36 16 9 C -0.14 -3.83 7.57 71.98 0.54 -3.28 16 10 C -0.11 -4.37 4.71 30.59 0.14 -4.22 16 11 C 0.03 1.60 3.50 29.85 0.10 1.71 16 12 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 13 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 14 C 0.01 0.42 5.46 84.66 0.46 0.88 16 15 N -0.92 -55.23 13.29 21.45 0.28 -54.94 16 16 Si 0.95 44.45 29.54 68.60 2.03 46.47 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 C -0.06 -1.63 2.70 -19.86 -0.05 -1.69 16 21 C -0.12 -3.60 9.15 22.27 0.20 -3.39 16 22 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 23 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 24 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 25 C -0.13 -2.98 8.61 22.27 0.19 -2.79 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.64 7.38 -2.38 -0.02 1.62 16 28 H 0.07 2.99 2.75 -2.38 -0.01 2.98 16 29 H 0.06 1.90 6.21 -2.38 -0.01 1.88 16 30 H 0.08 1.98 7.23 -2.39 -0.02 1.96 16 31 H 0.07 1.45 7.25 -2.38 -0.02 1.43 16 32 H 0.07 1.65 5.49 -2.39 -0.01 1.64 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.78 4.70 -2.39 -0.01 1.76 16 35 H 0.04 0.97 7.36 -2.38 -0.02 0.95 16 36 H 0.34 12.68 4.07 -89.69 -0.36 12.32 16 37 H 0.08 1.88 3.90 -2.39 -0.01 1.87 16 38 H 0.05 1.32 8.12 -2.39 -0.02 1.30 16 39 H 0.06 1.58 7.31 -2.39 -0.02 1.56 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 2.10 8.13 -2.38 -0.02 2.08 16 42 H -0.01 -0.74 7.95 -2.39 -0.02 -0.76 16 43 H 0.01 0.57 4.75 -2.38 -0.01 0.56 16 44 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 45 H 0.12 3.69 6.43 -2.91 -0.02 3.68 16 46 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 47 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 48 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 49 H 0.13 2.61 7.04 -2.91 -0.02 2.59 16 Total: -1.00 -61.18 353.86 5.19 -55.99 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.57 Total: 34.41 kcal Atomic # 6 Polarization: -62.98 SS G_CDS: 4.13 Total: -58.85 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -1.54 Total: -78.02 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.18 5.19 -55.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.982 kcal (2) G-P(sol) polarization free energy of solvation -61.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds