Wall clock time and date at job start Tue Mar 31 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47272 * 2 1 4 4 C 1.53000 * 109.47139 * 119.99853 * 2 1 3 5 5 C 1.52993 * 109.47322 * 174.60647 * 4 2 1 6 6 H 1.08995 * 109.47175 * 55.64728 * 5 4 2 7 7 N 1.46906 * 109.47333 * 175.65080 * 5 4 2 8 8 C 1.46895 * 110.99998 * 205.50401 * 7 5 4 9 9 H 1.09002 * 109.47160 * 323.91719 * 8 7 5 10 10 C 1.53002 * 109.47092 * 83.91600 * 8 7 5 11 11 C 1.53001 * 109.47367 * 203.91514 * 8 7 5 12 12 C 1.53004 * 109.46758 * 64.99990 * 11 8 7 13 13 C 1.50700 * 109.46899 * 180.02562 * 12 11 8 14 14 H 1.08001 * 120.00199 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99578 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00296 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99711 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47272 * 59.99526 * 17 15 13 19 19 H 1.48502 * 109.47421 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46885 * 299.99399 * 17 15 13 21 21 C 1.50707 * 109.47238 * 295.64681 * 5 4 2 22 22 C 1.38237 * 119.99896 * 99.99777 * 21 5 4 23 23 C 1.38237 * 119.99893 * 179.97438 * 22 21 5 24 24 C 1.38238 * 119.99984 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99745 * 359.95682 * 24 23 22 26 26 C 1.38232 * 120.00543 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47148 * 300.00071 * 1 2 3 28 28 H 1.09002 * 109.47128 * 60.00015 * 1 2 3 29 29 H 1.09003 * 109.47765 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47088 * 239.99375 * 2 1 3 31 31 H 1.08994 * 109.46854 * 66.11836 * 3 2 1 32 32 H 1.08996 * 109.46583 * 186.12039 * 3 2 1 33 33 H 1.09000 * 109.46687 * 306.11543 * 3 2 1 34 34 H 1.09000 * 109.47086 * 54.60035 * 4 2 1 35 35 H 1.09002 * 109.47057 * 294.60536 * 4 2 1 36 36 H 1.00898 * 110.99634 * 329.45890 * 7 5 4 37 37 H 1.08999 * 109.46939 * 55.14364 * 10 8 7 38 38 H 1.09005 * 109.47326 * 175.14047 * 10 8 7 39 39 H 1.09000 * 109.47356 * 295.14185 * 10 8 7 40 40 H 1.08995 * 109.47380 * 185.00006 * 11 8 7 41 41 H 1.08993 * 109.46962 * 305.00478 * 11 8 7 42 42 H 1.09005 * 109.47151 * 300.00279 * 12 11 8 43 43 H 1.09005 * 109.47033 * 59.99821 * 12 11 8 44 44 H 0.97002 * 120.00134 * 180.02562 * 16 15 13 45 45 H 1.07997 * 119.99541 * 0.25946 * 22 21 5 46 46 H 1.07992 * 119.99672 * 179.97438 * 23 22 21 47 47 H 1.07996 * 119.99729 * 179.97438 * 24 23 22 48 48 H 1.08005 * 119.99443 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00351 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5639 -0.8397 1.1834 6 1 4.0002 0.1509 1.0560 7 7 4.0629 -1.4381 2.4288 8 6 5.4528 -1.0379 2.6851 9 1 5.9919 -0.9714 1.7401 10 6 5.4712 0.3251 3.3799 11 6 6.1254 -2.0775 3.5838 12 6 6.2189 -3.4110 2.8395 13 6 6.8808 -4.4352 3.7249 14 1 7.2023 -4.1625 4.7192 15 6 7.0760 -5.7205 3.2655 16 7 6.6840 -6.0528 2.0550 17 14 7.8958 -6.9902 4.3633 18 1 7.0921 -7.1690 5.5992 19 1 7.9866 -8.2845 3.6409 20 1 9.2601 -6.5267 4.7227 21 6 3.9499 -1.7124 0.0169 22 6 4.3715 -1.1369 -1.1671 23 6 4.7261 -1.9375 -2.2369 24 6 4.6597 -3.3135 -2.1224 25 6 4.2394 -3.8889 -0.9378 26 6 3.8852 -3.0885 0.1320 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.7689 1.9237 0.9396 32 1 3.1244 1.4443 -0.1096 33 1 1.5900 1.9869 -0.8302 34 1 1.5998 -1.7172 1.2989 35 1 1.7576 -0.1546 2.1366 36 1 3.4682 -1.1994 3.2082 37 1 4.8602 0.2816 4.2815 38 1 6.4960 0.5827 3.6476 39 1 5.0706 1.0821 2.7056 40 1 7.1270 -1.7372 3.8466 41 1 5.5364 -2.2086 4.4915 42 1 5.2172 -3.7514 2.5767 43 1 6.8078 -3.2799 1.9317 44 1 6.8210 -6.9571 1.7319 45 1 4.4282 -0.0620 -1.2548 46 1 5.0551 -1.4878 -3.1620 47 1 4.9363 -3.9388 -2.9583 48 1 4.1871 -4.9640 -0.8485 49 1 3.5564 -3.5381 1.0573 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478692.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:04 Heat of formation + Delta-G solvation = -10.496421 kcal Electronic energy + Delta-G solvation = -24113.474606 eV Core-core repulsion = 21038.841154 eV Total energy + Delta-G solvation = -3074.633452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.47905 -37.20908 -36.05122 -33.29511 -32.14405 -30.36202 -29.94790 -28.77385 -27.32432 -27.11226 -24.97009 -23.26840 -22.05505 -21.46062 -20.53811 -19.80831 -19.26409 -16.42841 -16.01792 -15.66651 -15.35364 -14.90839 -14.52797 -14.25981 -14.06094 -13.83114 -13.43556 -13.12407 -12.83100 -12.77755 -12.53217 -12.32023 -12.30796 -12.18260 -11.92156 -11.78613 -11.57944 -11.38321 -11.11663 -10.87614 -10.78228 -10.71566 -10.60969 -10.46122 -10.34819 -10.30221 -10.05169 -9.55652 -9.14899 -8.84867 -8.32290 -8.18915 -8.15565 -7.83998 -5.83448 -3.84082 1.87675 1.98846 3.40602 3.44770 3.47447 4.30243 4.42787 4.57615 4.82235 4.91925 5.01334 5.20518 5.32324 5.41158 5.43726 5.51504 5.51982 5.53975 5.55619 5.62749 5.66876 5.68509 5.74314 5.77684 5.85476 5.91131 5.98044 6.07431 6.15015 6.16789 6.20259 6.30745 6.35427 6.38135 6.48851 6.53956 6.61950 6.74000 6.93591 6.96110 7.14461 7.20642 7.38687 7.56726 7.62561 7.88709 7.91215 8.15404 8.29801 8.63449 9.24432 9.77777 11.26870 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.004776 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.043386 B = 5861.097693 C = 6791.859500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.110 4.110 5 C 0.127 3.873 6 H 0.048 0.952 7 N -0.666 5.666 8 C 0.087 3.913 9 H 0.071 0.929 10 C -0.180 4.180 11 C -0.099 4.099 12 C 0.034 3.966 13 C -0.519 4.519 14 H 0.048 0.952 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.883 3.117 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.071 4.071 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.065 4.065 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.336 0.664 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.005 0.995 44 H 0.257 0.743 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.120 0.880 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 13.646 -6.336 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.148 4.148 5 C 0.017 3.983 6 H 0.066 0.934 7 N -0.296 5.296 8 C -0.023 4.023 9 H 0.089 0.911 10 C -0.239 4.239 11 C -0.137 4.137 12 C -0.003 4.003 13 C -0.558 4.558 14 H 0.066 0.934 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.712 3.288 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.072 4.072 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.084 4.084 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.155 0.845 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.138 0.862 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.314 12.899 -6.740 17.838 hybrid contribution 0.607 0.110 0.858 1.057 sum -9.707 13.009 -5.882 17.265 Atomic orbital electron populations 1.21822 0.95498 1.01667 1.01268 1.21109 0.95326 0.96063 0.99093 1.21895 1.01110 0.96173 1.01296 1.21793 0.94372 1.01210 0.97422 1.20439 0.93952 0.94366 0.89520 0.93392 1.60489 1.02965 1.62462 1.03705 1.21722 0.89073 0.92336 0.99168 0.91091 1.22545 1.02051 0.98863 1.00424 1.21629 0.97271 0.97082 0.97699 1.18964 0.97696 0.89243 0.94349 1.21326 1.38498 0.95513 1.00446 0.93373 1.24955 0.95988 0.98291 0.94942 1.69968 1.47562 1.19005 1.16494 0.86808 0.80050 0.81074 0.80880 1.20463 1.21457 1.20529 1.19716 0.99300 0.94366 0.93798 1.20856 1.01207 0.98804 0.93597 1.20905 1.01909 0.93918 0.98397 1.21053 1.00696 0.94774 0.97959 1.21227 0.98382 1.00191 0.93059 1.21069 0.96530 0.92687 0.98071 0.92999 0.93015 0.92674 0.90429 0.93009 0.92611 0.93033 0.90882 0.92094 0.84543 0.92895 0.92345 0.93841 0.93775 0.93608 0.94774 0.97631 0.93350 0.87360 0.87150 0.87031 0.86236 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.15 0.34 -0.99 16 2 C -0.10 -1.00 2.74 -90.62 -0.25 -1.25 16 3 C -0.15 -1.38 8.81 37.16 0.33 -1.05 16 4 C -0.11 -1.27 4.17 -26.73 -0.11 -1.38 16 5 C 0.13 1.74 1.98 -68.86 -0.14 1.60 16 6 H 0.05 0.64 5.32 -51.93 -0.28 0.37 16 7 N -0.67 -10.41 4.74 -100.95 -0.48 -10.88 16 8 C 0.09 1.47 2.40 -67.71 -0.16 1.31 16 9 H 0.07 1.33 7.66 -51.93 -0.40 0.94 16 10 C -0.18 -2.46 9.16 37.16 0.34 -2.12 16 11 C -0.10 -2.07 4.83 -26.73 -0.13 -2.19 16 12 C 0.03 0.90 4.86 -27.88 -0.14 0.77 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 14 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 17 Si 0.88 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.07 -1.12 3.89 -104.62 -0.41 -1.52 16 22 C -0.13 -1.84 8.60 -39.58 -0.34 -2.18 16 23 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 25 C -0.11 -1.97 10.05 -39.58 -0.40 -2.37 16 26 C -0.07 -1.18 9.21 -39.58 -0.36 -1.55 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.91 6.42 -51.93 -0.33 0.58 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.55 6.40 -51.93 -0.33 0.21 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 36 H 0.34 4.73 7.98 -39.29 -0.31 4.42 16 37 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.54 7.42 -51.93 -0.39 0.15 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.94 7.13 -51.93 -0.37 0.57 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 1.36 7.65 -52.49 -0.40 0.96 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 49 H 0.13 2.61 7.21 -52.49 -0.38 2.23 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -30.15 384.35 -10.66 -40.82 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -9.06 Total: 4.71 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -2.63 Total: -31.38 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.26 Total: -37.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.15 -10.66 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478692.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.320 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds