Wall clock time and date at job start Tue Mar 31 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47272 * 2 1 4 4 C 1.53000 * 109.47139 * 119.99853 * 2 1 3 5 5 C 1.52993 * 109.47322 * 174.60647 * 4 2 1 6 6 H 1.08995 * 109.47175 * 55.64728 * 5 4 2 7 7 N 1.46906 * 109.47333 * 175.65080 * 5 4 2 8 8 C 1.46895 * 110.99998 * 205.50401 * 7 5 4 9 9 H 1.09002 * 109.47160 * 323.91719 * 8 7 5 10 10 C 1.53002 * 109.47092 * 83.91600 * 8 7 5 11 11 C 1.53001 * 109.47367 * 203.91514 * 8 7 5 12 12 C 1.53004 * 109.46758 * 64.99990 * 11 8 7 13 13 C 1.50700 * 109.46899 * 180.02562 * 12 11 8 14 14 H 1.08001 * 120.00199 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99578 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00296 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99711 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47272 * 59.99526 * 17 15 13 19 19 H 1.48502 * 109.47421 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46885 * 299.99399 * 17 15 13 21 21 C 1.50707 * 109.47238 * 295.64681 * 5 4 2 22 22 C 1.38237 * 119.99896 * 99.99777 * 21 5 4 23 23 C 1.38237 * 119.99893 * 179.97438 * 22 21 5 24 24 C 1.38238 * 119.99984 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99745 * 359.95682 * 24 23 22 26 26 C 1.38232 * 120.00543 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47148 * 300.00071 * 1 2 3 28 28 H 1.09002 * 109.47128 * 60.00015 * 1 2 3 29 29 H 1.09003 * 109.47765 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47088 * 239.99375 * 2 1 3 31 31 H 1.08994 * 109.46854 * 66.11836 * 3 2 1 32 32 H 1.08996 * 109.46583 * 186.12039 * 3 2 1 33 33 H 1.09000 * 109.46687 * 306.11543 * 3 2 1 34 34 H 1.09000 * 109.47086 * 54.60035 * 4 2 1 35 35 H 1.09002 * 109.47057 * 294.60536 * 4 2 1 36 36 H 1.00898 * 110.99634 * 329.45890 * 7 5 4 37 37 H 1.08999 * 109.46939 * 55.14364 * 10 8 7 38 38 H 1.09005 * 109.47326 * 175.14047 * 10 8 7 39 39 H 1.09000 * 109.47356 * 295.14185 * 10 8 7 40 40 H 1.08995 * 109.47380 * 185.00006 * 11 8 7 41 41 H 1.08993 * 109.46962 * 305.00478 * 11 8 7 42 42 H 1.09005 * 109.47151 * 300.00279 * 12 11 8 43 43 H 1.09005 * 109.47033 * 59.99821 * 12 11 8 44 44 H 0.97002 * 120.00134 * 180.02562 * 16 15 13 45 45 H 1.07997 * 119.99541 * 0.25946 * 22 21 5 46 46 H 1.07992 * 119.99672 * 179.97438 * 23 22 21 47 47 H 1.07996 * 119.99729 * 179.97438 * 24 23 22 48 48 H 1.08005 * 119.99443 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00351 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5639 -0.8397 1.1834 6 1 4.0002 0.1509 1.0560 7 7 4.0629 -1.4381 2.4288 8 6 5.4528 -1.0379 2.6851 9 1 5.9919 -0.9714 1.7401 10 6 5.4712 0.3251 3.3799 11 6 6.1254 -2.0775 3.5838 12 6 6.2189 -3.4110 2.8395 13 6 6.8808 -4.4352 3.7249 14 1 7.2023 -4.1625 4.7192 15 6 7.0760 -5.7205 3.2655 16 7 6.6840 -6.0528 2.0550 17 14 7.8958 -6.9902 4.3633 18 1 7.0921 -7.1690 5.5992 19 1 7.9866 -8.2845 3.6409 20 1 9.2601 -6.5267 4.7227 21 6 3.9499 -1.7124 0.0169 22 6 4.3715 -1.1369 -1.1671 23 6 4.7261 -1.9375 -2.2369 24 6 4.6597 -3.3135 -2.1224 25 6 4.2394 -3.8889 -0.9378 26 6 3.8852 -3.0885 0.1320 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.7689 1.9237 0.9396 32 1 3.1244 1.4443 -0.1096 33 1 1.5900 1.9869 -0.8302 34 1 1.5998 -1.7172 1.2989 35 1 1.7576 -0.1546 2.1366 36 1 3.4682 -1.1994 3.2082 37 1 4.8602 0.2816 4.2815 38 1 6.4960 0.5827 3.6476 39 1 5.0706 1.0821 2.7056 40 1 7.1270 -1.7372 3.8466 41 1 5.5364 -2.2086 4.4915 42 1 5.2172 -3.7514 2.5767 43 1 6.8078 -3.2799 1.9317 44 1 6.8210 -6.9571 1.7319 45 1 4.4282 -0.0620 -1.2548 46 1 5.0551 -1.4878 -3.1620 47 1 4.9363 -3.9388 -2.9583 48 1 4.1871 -4.9640 -0.8485 49 1 3.5564 -3.5381 1.0573 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478692.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:04 Heat of formation + Delta-G solvation = -25.116005 kcal Electronic energy + Delta-G solvation = -24114.108559 eV Core-core repulsion = 21038.841154 eV Total energy + Delta-G solvation = -3075.267405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67505 -38.46755 -37.17067 -35.20422 -33.63463 -31.65026 -31.62130 -30.16110 -28.24677 -27.93478 -26.92034 -24.43670 -23.42118 -23.10940 -21.78435 -21.21391 -20.35332 -18.32992 -17.60963 -16.88269 -16.55075 -16.28576 -16.14730 -15.58022 -15.31504 -14.81654 -14.73350 -14.44588 -14.11111 -13.99478 -13.96411 -13.86136 -13.44674 -13.30754 -13.11185 -12.94332 -12.91641 -12.83358 -12.71892 -12.38156 -12.31644 -11.97182 -11.79551 -11.71350 -11.52060 -11.45651 -11.36680 -11.32734 -11.14714 -10.89394 -10.43508 -9.62145 -9.42718 -9.07937 -8.08979 -6.19226 0.61024 0.69955 1.39028 1.41868 1.49277 2.44778 3.02646 3.22080 3.28243 3.85096 4.04134 4.12703 4.16387 4.17344 4.21006 4.29338 4.35379 4.42248 4.45940 4.50481 4.65296 4.76525 4.80358 4.84910 4.86428 4.88148 4.95360 4.99016 5.06509 5.08786 5.10703 5.14959 5.20579 5.28850 5.32608 5.34484 5.38448 5.50791 5.53658 5.58262 5.63226 5.69673 5.81286 5.87681 5.97341 6.10559 6.28599 6.38804 6.40291 6.73352 7.00196 7.47786 9.00637 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.004776 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.043386 B = 5861.097693 C = 6791.859500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.134 3.866 6 H 0.063 0.937 7 N -0.684 5.684 8 C 0.097 3.903 9 H 0.050 0.950 10 C -0.168 4.168 11 C -0.090 4.090 12 C 0.050 3.950 13 C -0.546 4.546 14 H 0.051 0.949 15 C 0.004 3.996 16 N -0.923 5.923 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.072 4.072 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.089 4.089 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.346 0.654 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.011 0.989 43 H -0.033 1.033 44 H 0.258 0.742 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.130 0.870 48 H 0.102 0.898 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 16.026 -6.076 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.141 4.141 5 C 0.024 3.976 6 H 0.080 0.920 7 N -0.316 5.316 8 C -0.012 4.012 9 H 0.068 0.932 10 C -0.227 4.227 11 C -0.129 4.129 12 C 0.013 3.987 13 C -0.584 4.584 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.563 5.563 17 Si 0.779 3.221 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.073 4.073 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.157 4.157 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.166 0.834 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.030 0.970 43 H -0.015 1.015 44 H 0.067 0.933 45 H 0.155 0.845 46 H 0.162 0.838 47 H 0.148 0.852 48 H 0.120 0.880 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.429 15.292 -6.467 19.607 hybrid contribution 0.629 -0.665 0.733 1.173 sum -9.800 14.627 -5.734 18.517 Atomic orbital electron populations 1.21800 0.94580 1.01449 1.02222 1.21059 0.96088 0.96608 0.97485 1.21870 1.00904 0.95154 1.02239 1.21739 0.92572 1.00748 0.99024 1.20457 0.95349 0.94050 0.87701 0.91958 1.60315 1.02618 1.63696 1.04962 1.21424 0.89218 0.93077 0.97520 0.93203 1.22396 1.02724 0.96636 1.00931 1.21476 0.97937 0.95558 0.97885 1.18724 0.95235 0.91816 0.92969 1.21786 1.39013 0.96660 1.00971 0.93068 1.25855 0.96513 1.00595 0.96390 1.70126 1.48393 1.19522 1.18273 0.85681 0.79234 0.78131 0.79032 1.19389 1.20964 1.19529 1.19958 0.98633 0.93441 0.95286 1.21203 0.99949 1.00312 0.92890 1.21320 1.00460 0.93253 0.99683 1.21285 1.00438 0.96029 0.97515 1.21267 1.00302 0.99594 0.94532 1.20908 0.98563 0.94219 0.97101 0.92088 0.92002 0.93541 0.91966 0.92198 0.92884 0.91971 0.92749 0.90420 0.83416 0.91661 0.92108 0.91734 0.93879 0.93335 0.97027 1.01508 0.93288 0.84500 0.83786 0.85179 0.88012 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 2 C -0.09 -1.76 2.74 -10.79 -0.03 -1.79 16 3 C -0.14 -2.24 8.81 71.98 0.63 -1.61 16 4 C -0.10 -2.28 4.17 30.59 0.13 -2.15 16 5 C 0.13 3.56 1.98 44.17 0.09 3.65 16 6 H 0.06 1.51 5.32 -2.39 -0.01 1.50 16 7 N -0.68 -21.45 4.74 -473.30 -2.25 -23.70 16 8 C 0.10 3.27 2.40 44.92 0.11 3.38 16 9 H 0.05 1.88 7.66 -2.39 -0.02 1.86 16 10 C -0.17 -4.16 9.16 71.98 0.66 -3.50 16 11 C -0.09 -3.84 4.83 30.60 0.15 -3.70 16 12 C 0.05 2.72 4.86 29.85 0.15 2.87 16 13 C -0.55 -32.47 9.11 25.60 0.23 -32.24 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 15 C 0.00 0.26 5.46 84.66 0.46 0.73 16 16 N -0.92 -57.87 13.29 21.45 0.28 -57.59 16 17 Si 0.95 45.99 29.54 68.60 2.03 48.02 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.07 -2.31 3.89 -19.86 -0.08 -2.38 16 22 C -0.13 -3.49 8.60 22.27 0.19 -3.30 16 23 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 24 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 25 C -0.14 -5.36 10.05 22.27 0.22 -5.13 16 26 C -0.09 -3.49 9.21 22.27 0.21 -3.29 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.38 6.42 -2.39 -0.02 1.36 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.85 6.40 -2.39 -0.02 0.84 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 36 H 0.35 9.47 7.98 -89.70 -0.72 8.76 16 37 H 0.06 1.47 8.05 -2.39 -0.02 1.46 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.06 1.35 7.42 -2.39 -0.02 1.34 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.01 0.67 7.13 -2.38 -0.02 0.65 16 43 H -0.03 -2.07 8.14 -2.38 -0.02 -2.09 16 44 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 45 H 0.14 3.02 7.65 -2.91 -0.02 2.99 16 46 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 47 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 48 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 49 H 0.10 4.46 7.21 -2.91 -0.02 4.44 16 Total: -1.00 -68.13 384.35 4.46 -63.66 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.17 Total: 27.24 kcal Atomic # 6 Polarization: -61.86 SS G_CDS: 4.23 Total: -57.64 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -1.96 Total: -81.29 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -68.13 4.46 -63.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478692.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.549 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds