Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47023 * 2 1 4 4 C 1.53003 * 109.47249 * 119.99709 * 2 1 3 5 5 C 1.53003 * 109.46725 * 66.73786 * 4 2 1 6 6 H 1.08995 * 109.47183 * 306.28432 * 5 4 2 7 7 N 1.46907 * 109.47043 * 66.28728 * 5 4 2 8 8 C 1.46895 * 110.99829 * 260.34399 * 7 5 4 9 9 H 1.08998 * 109.47238 * 44.46464 * 8 7 5 10 10 C 1.52996 * 109.47138 * 284.46036 * 8 7 5 11 11 C 1.52999 * 109.46762 * 164.45985 * 8 7 5 12 12 C 1.52999 * 109.47624 * 295.00247 * 11 8 7 13 13 C 1.50699 * 109.47628 * 180.02562 * 12 11 8 14 14 H 1.08000 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99954 * 179.72265 * 13 12 11 16 16 N 1.31512 * 119.99606 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46917 * 90.00169 * 17 15 13 19 19 H 1.48496 * 109.46887 * 209.99958 * 17 15 13 20 20 H 1.48502 * 109.47030 * 330.00117 * 17 15 13 21 21 C 1.50695 * 109.47034 * 186.28603 * 5 4 2 22 22 C 1.38240 * 120.00370 * 279.73135 * 21 5 4 23 23 C 1.38232 * 120.00240 * 179.78893 * 22 21 5 24 24 C 1.38233 * 119.99794 * 0.43688 * 23 22 21 25 25 C 1.38240 * 120.00277 * 359.81135 * 24 23 22 26 26 C 1.38227 * 119.99580 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46860 * 60.00159 * 1 2 3 28 28 H 1.08996 * 109.46992 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46937 * 300.00397 * 1 2 3 30 30 H 1.09002 * 109.47528 * 240.00037 * 2 1 3 31 31 H 1.09006 * 109.46636 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47128 * 299.99472 * 3 2 1 33 33 H 1.08994 * 109.46953 * 60.00307 * 3 2 1 34 34 H 1.08998 * 109.47239 * 306.74259 * 4 2 1 35 35 H 1.08997 * 109.47068 * 186.74108 * 4 2 1 36 36 H 1.00902 * 110.99368 * 136.39209 * 7 5 4 37 37 H 1.09001 * 109.47087 * 299.99920 * 10 8 7 38 38 H 1.09000 * 109.47214 * 60.00371 * 10 8 7 39 39 H 1.09009 * 109.46861 * 180.02562 * 10 8 7 40 40 H 1.09000 * 109.47498 * 175.00220 * 11 8 7 41 41 H 1.09002 * 109.47512 * 55.00257 * 11 8 7 42 42 H 1.09007 * 109.47047 * 59.99336 * 12 11 8 43 43 H 1.09011 * 109.46667 * 300.00269 * 12 11 8 44 44 H 0.96997 * 119.99758 * 180.02562 * 16 15 13 45 45 H 1.07999 * 119.99353 * 359.97438 * 22 21 5 46 46 H 1.08001 * 120.00313 * 180.27509 * 23 22 21 47 47 H 1.08004 * 120.00080 * 179.83438 * 24 23 22 48 48 H 1.08002 * 120.00214 * 179.97438 * 25 24 23 49 49 H 1.08004 * 120.00036 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6729 -2.2043 1.1675 6 1 0.6016 -2.3043 0.9932 7 7 2.4096 -2.8309 0.0617 8 6 1.5606 -2.9597 -1.1301 9 1 1.0099 -2.0321 -1.2860 10 6 0.5736 -4.1116 -0.9311 11 6 2.4367 -3.2441 -2.3518 12 6 3.3378 -2.0383 -2.6252 13 6 4.2003 -2.3181 -3.8289 14 1 4.1145 -3.2619 -4.3468 15 6 5.0950 -1.3672 -4.2719 16 7 5.8480 -1.6117 -5.3221 17 14 5.2377 0.2682 -3.3806 18 1 6.2624 0.1612 -2.3111 19 1 5.6372 1.3243 -4.3450 20 1 3.9270 0.6190 -2.7771 21 6 2.0367 -2.8839 2.4624 22 6 3.3449 -3.2618 2.7010 23 6 3.6794 -3.8813 3.8905 24 6 2.7041 -4.1311 4.8378 25 6 1.3950 -3.7579 4.5971 26 6 1.0614 -3.1344 3.4094 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5816 -0.2817 2.1352 35 1 3.1233 -0.6179 1.3116 36 1 2.7834 -3.7264 0.3380 37 1 1.1244 -5.0393 -0.7753 38 1 -0.0505 -3.9090 -0.0607 39 1 -0.0561 -4.2075 -1.8157 40 1 1.8024 -3.4276 -3.2191 41 1 3.0533 -4.1224 -2.1604 42 1 3.9722 -1.8547 -1.7579 43 1 2.7212 -1.1599 -2.8167 44 1 6.4777 -0.9429 -5.6336 45 1 4.1060 -3.0703 1.9591 46 1 4.7022 -4.1726 4.0788 47 1 2.9650 -4.6176 5.7661 48 1 0.6330 -3.9534 5.3371 49 1 0.0385 -2.8431 3.2212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = -6.566650 kcal Electronic energy + Delta-G solvation = -24153.194008 eV Core-core repulsion = 21078.730963 eV Total energy + Delta-G solvation = -3074.463044 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85488 -37.86510 -35.46434 -33.56952 -32.41124 -30.99203 -30.28493 -28.98949 -27.38369 -26.99902 -25.28663 -23.57543 -22.65721 -21.10059 -20.54756 -20.13759 -19.22245 -17.05455 -16.53546 -15.97824 -15.46352 -14.73673 -14.45829 -14.39965 -14.13966 -13.92040 -13.63125 -13.42794 -13.33757 -12.86831 -12.73843 -12.58082 -12.35097 -12.28023 -12.03441 -11.85190 -11.53686 -11.42417 -11.35569 -11.13662 -11.06927 -10.82193 -10.62480 -10.60244 -10.28600 -10.01858 -9.83411 -9.55142 -9.43556 -8.98523 -8.96092 -8.74502 -8.41269 -7.99425 -5.92788 -3.88716 1.27340 1.33771 3.40831 3.47212 3.53472 3.71618 4.38221 4.57151 4.63952 4.85051 4.91613 5.07012 5.13608 5.17936 5.24360 5.27404 5.40408 5.43267 5.45506 5.49738 5.56570 5.62553 5.69761 5.79368 5.87464 5.94535 5.97160 5.99508 6.03858 6.06257 6.13132 6.21096 6.23199 6.31944 6.37845 6.45050 6.46398 6.51793 6.54186 6.64338 6.75504 6.79166 6.94108 7.11940 7.42114 7.55419 7.71244 7.76817 7.96447 8.67762 9.13735 9.71576 11.21148 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.004796 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.373342 B = 5837.134830 C = 6154.874581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.144 4.144 4 C -0.092 4.092 5 C 0.123 3.877 6 H 0.061 0.939 7 N -0.666 5.666 8 C 0.074 3.926 9 H 0.083 0.917 10 C -0.183 4.183 11 C -0.092 4.092 12 C -0.004 4.004 13 C -0.516 4.516 14 H 0.067 0.933 15 C 0.064 3.936 16 N -0.910 5.910 17 Si 0.878 3.122 18 H -0.279 1.279 19 H -0.293 1.293 20 H -0.261 1.261 21 C -0.086 4.086 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.117 4.117 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.340 0.660 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.008 0.992 44 H 0.260 0.740 45 H 0.133 0.867 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -1.379 19.712 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.201 4.201 4 C -0.130 4.130 5 C 0.013 3.987 6 H 0.078 0.922 7 N -0.297 5.297 8 C -0.036 4.036 9 H 0.101 0.899 10 C -0.242 4.242 11 C -0.129 4.129 12 C -0.041 4.041 13 C -0.554 4.554 14 H 0.085 0.915 15 C -0.136 4.136 16 N -0.550 5.550 17 Si 0.706 3.294 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.185 1.185 21 C -0.087 4.087 22 C -0.123 4.123 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.135 4.135 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.151 0.849 46 H 0.139 0.861 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.860 -0.704 19.378 22.225 hybrid contribution -0.383 0.088 0.673 0.779 sum -11.243 -0.615 20.051 22.996 Atomic orbital electron populations 1.21917 0.96203 1.01175 1.01192 1.21288 0.94880 0.96161 1.00284 1.21800 1.01224 0.96253 1.00859 1.21614 1.01716 0.92797 0.96872 1.20591 0.96819 0.94403 0.86860 0.92164 1.60743 1.36070 1.28950 1.03984 1.21998 0.92798 0.97330 0.91440 0.89863 1.22559 1.00343 1.00034 1.01224 1.21462 0.97316 1.00471 0.93700 1.19469 0.94795 0.93080 0.96795 1.21270 1.19564 1.03067 1.11539 0.91491 1.25017 0.95374 0.98402 0.94778 1.69932 1.24771 1.35172 1.25119 0.86785 0.79134 0.83951 0.79510 1.20454 1.21945 1.18528 1.20214 0.93772 0.98270 0.96446 1.21187 0.96301 0.97541 0.97261 1.21193 0.99367 0.99135 0.94102 1.21128 0.93358 1.00676 0.99333 1.21077 0.96446 0.99417 0.97215 1.21028 0.98974 0.99499 0.94011 0.92908 0.92928 0.93304 0.88512 0.92712 0.92967 0.93482 0.92729 0.91190 0.84103 0.92847 0.93671 0.92259 0.92875 0.93023 0.95451 0.97385 0.93018 0.84873 0.86133 0.86470 0.86432 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.49 37.16 0.32 -1.46 16 2 C -0.11 -1.52 2.40 -90.62 -0.22 -1.74 16 3 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 4 C -0.09 -1.21 4.32 -26.73 -0.12 -1.32 16 5 C 0.12 1.54 2.05 -68.86 -0.14 1.40 16 6 H 0.06 0.74 4.64 -51.93 -0.24 0.50 16 7 N -0.67 -9.67 4.88 -100.96 -0.49 -10.16 16 8 C 0.07 1.13 1.79 -67.72 -0.12 1.01 16 9 H 0.08 1.31 4.67 -51.93 -0.24 1.06 16 10 C -0.18 -2.38 9.14 37.16 0.34 -2.04 16 11 C -0.09 -1.78 4.83 -26.73 -0.13 -1.91 16 12 C 0.00 -0.10 3.39 -27.88 -0.09 -0.19 16 13 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 14 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.74 13.96 55.43 0.77 -27.96 16 17 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 20 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 21 C -0.09 -1.02 4.75 -104.62 -0.50 -1.52 16 22 C -0.10 -1.25 8.78 -39.58 -0.35 -1.60 16 23 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 26 C -0.12 -1.24 9.67 -39.59 -0.38 -1.63 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.61 5.83 -51.93 -0.30 0.31 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.65 4.59 -51.93 -0.24 1.41 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.34 4.79 7.17 -39.29 -0.28 4.51 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.53 6.99 -51.93 -0.36 0.17 16 39 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.66 7.20 -51.92 -0.37 0.29 16 43 H 0.01 0.19 6.57 -51.92 -0.34 -0.15 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 45 H 0.13 1.67 7.55 -52.49 -0.40 1.27 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.12 1.09 8.04 -52.48 -0.42 0.67 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -30.81 374.39 -10.13 -40.94 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.71 Total: 4.90 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -2.67 Total: -31.02 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.28 Total: -38.12 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.81 -10.13 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.373 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds