Wall clock time and date at job start Tue Mar 31 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47023 * 2 1 4 4 C 1.53003 * 109.47249 * 119.99709 * 2 1 3 5 5 C 1.53003 * 109.46725 * 66.73786 * 4 2 1 6 6 H 1.08995 * 109.47183 * 306.28432 * 5 4 2 7 7 N 1.46907 * 109.47043 * 66.28728 * 5 4 2 8 8 C 1.46895 * 110.99829 * 260.34399 * 7 5 4 9 9 H 1.08998 * 109.47238 * 44.46464 * 8 7 5 10 10 C 1.52996 * 109.47138 * 284.46036 * 8 7 5 11 11 C 1.52999 * 109.46762 * 164.45985 * 8 7 5 12 12 C 1.52999 * 109.47624 * 295.00247 * 11 8 7 13 13 C 1.50699 * 109.47628 * 180.02562 * 12 11 8 14 14 H 1.08000 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99954 * 179.72265 * 13 12 11 16 16 N 1.31512 * 119.99606 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46917 * 90.00169 * 17 15 13 19 19 H 1.48496 * 109.46887 * 209.99958 * 17 15 13 20 20 H 1.48502 * 109.47030 * 330.00117 * 17 15 13 21 21 C 1.50695 * 109.47034 * 186.28603 * 5 4 2 22 22 C 1.38240 * 120.00370 * 279.73135 * 21 5 4 23 23 C 1.38232 * 120.00240 * 179.78893 * 22 21 5 24 24 C 1.38233 * 119.99794 * 0.43688 * 23 22 21 25 25 C 1.38240 * 120.00277 * 359.81135 * 24 23 22 26 26 C 1.38227 * 119.99580 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46860 * 60.00159 * 1 2 3 28 28 H 1.08996 * 109.46992 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46937 * 300.00397 * 1 2 3 30 30 H 1.09002 * 109.47528 * 240.00037 * 2 1 3 31 31 H 1.09006 * 109.46636 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47128 * 299.99472 * 3 2 1 33 33 H 1.08994 * 109.46953 * 60.00307 * 3 2 1 34 34 H 1.08998 * 109.47239 * 306.74259 * 4 2 1 35 35 H 1.08997 * 109.47068 * 186.74108 * 4 2 1 36 36 H 1.00902 * 110.99368 * 136.39209 * 7 5 4 37 37 H 1.09001 * 109.47087 * 299.99920 * 10 8 7 38 38 H 1.09000 * 109.47214 * 60.00371 * 10 8 7 39 39 H 1.09009 * 109.46861 * 180.02562 * 10 8 7 40 40 H 1.09000 * 109.47498 * 175.00220 * 11 8 7 41 41 H 1.09002 * 109.47512 * 55.00257 * 11 8 7 42 42 H 1.09007 * 109.47047 * 59.99336 * 12 11 8 43 43 H 1.09011 * 109.46667 * 300.00269 * 12 11 8 44 44 H 0.96997 * 119.99758 * 180.02562 * 16 15 13 45 45 H 1.07999 * 119.99353 * 359.97438 * 22 21 5 46 46 H 1.08001 * 120.00313 * 180.27509 * 23 22 21 47 47 H 1.08004 * 120.00080 * 179.83438 * 24 23 22 48 48 H 1.08002 * 120.00214 * 179.97438 * 25 24 23 49 49 H 1.08004 * 120.00036 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6729 -2.2043 1.1675 6 1 0.6016 -2.3043 0.9932 7 7 2.4096 -2.8309 0.0617 8 6 1.5606 -2.9597 -1.1301 9 1 1.0099 -2.0321 -1.2860 10 6 0.5736 -4.1116 -0.9311 11 6 2.4367 -3.2441 -2.3518 12 6 3.3378 -2.0383 -2.6252 13 6 4.2003 -2.3181 -3.8289 14 1 4.1145 -3.2619 -4.3468 15 6 5.0950 -1.3672 -4.2719 16 7 5.8480 -1.6117 -5.3221 17 14 5.2377 0.2682 -3.3806 18 1 6.2624 0.1612 -2.3111 19 1 5.6372 1.3243 -4.3450 20 1 3.9270 0.6190 -2.7771 21 6 2.0367 -2.8839 2.4624 22 6 3.3449 -3.2618 2.7010 23 6 3.6794 -3.8813 3.8905 24 6 2.7041 -4.1311 4.8378 25 6 1.3950 -3.7579 4.5971 26 6 1.0614 -3.1344 3.4094 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5816 -0.2817 2.1352 35 1 3.1233 -0.6179 1.3116 36 1 2.7834 -3.7264 0.3380 37 1 1.1244 -5.0393 -0.7753 38 1 -0.0505 -3.9090 -0.0607 39 1 -0.0561 -4.2075 -1.8157 40 1 1.8024 -3.4276 -3.2191 41 1 3.0533 -4.1224 -2.1604 42 1 3.9722 -1.8547 -1.7579 43 1 2.7212 -1.1599 -2.8167 44 1 6.4777 -0.9429 -5.6336 45 1 4.1060 -3.0703 1.9591 46 1 4.7022 -4.1726 4.0788 47 1 2.9650 -4.6176 5.7661 48 1 0.6330 -3.9534 5.3371 49 1 0.0385 -2.8431 3.2212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:07 Heat of formation + Delta-G solvation = -22.419863 kcal Electronic energy + Delta-G solvation = -24153.881455 eV Core-core repulsion = 21078.730963 eV Total energy + Delta-G solvation = -3075.150491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76700 -38.88054 -36.70872 -35.21590 -34.01084 -31.95937 -31.73580 -30.07106 -28.44053 -27.97807 -27.10585 -24.56197 -23.48263 -22.75304 -21.67372 -21.32973 -20.41106 -18.83281 -17.82383 -17.03263 -16.38195 -16.28148 -15.84257 -15.46336 -15.34799 -14.94753 -14.83025 -14.68121 -14.40151 -14.22832 -14.12444 -13.83978 -13.63602 -13.34607 -13.15522 -12.98419 -12.89008 -12.86468 -12.61348 -12.43963 -12.05558 -11.95553 -11.82665 -11.79806 -11.62732 -11.50800 -11.42181 -11.25757 -11.21035 -10.83728 -10.70424 -9.76949 -9.57030 -9.11731 -8.25602 -6.26807 0.47995 0.55168 1.36676 1.37161 1.51428 2.39317 2.92054 3.11390 3.30625 3.71608 4.02949 4.07514 4.12728 4.15671 4.21186 4.24995 4.32148 4.36763 4.43942 4.46660 4.68430 4.72250 4.73989 4.76783 4.80264 4.87655 4.92188 4.95281 4.98511 5.04143 5.09833 5.12468 5.15530 5.20728 5.22853 5.27368 5.38961 5.43176 5.54444 5.57484 5.61684 5.67625 5.69098 5.70600 5.78108 5.82757 6.16532 6.35305 6.37335 6.62305 6.82602 7.37524 8.91695 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.004796 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.373342 B = 5837.134830 C = 6154.874581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.145 4.145 4 C -0.086 4.086 5 C 0.131 3.869 6 H 0.070 0.930 7 N -0.680 5.680 8 C 0.085 3.915 9 H 0.084 0.916 10 C -0.174 4.174 11 C -0.086 4.086 12 C 0.009 3.991 13 C -0.527 4.527 14 H 0.027 0.973 15 C 0.005 3.995 16 N -0.956 5.956 17 Si 0.947 3.053 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.242 1.242 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.121 4.121 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.340 0.660 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.025 0.975 43 H 0.008 0.992 44 H 0.263 0.737 45 H 0.117 0.883 46 H 0.131 0.869 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 -0.717 22.802 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.203 4.203 4 C -0.125 4.125 5 C 0.022 3.978 6 H 0.088 0.912 7 N -0.312 5.312 8 C -0.024 4.024 9 H 0.102 0.898 10 C -0.233 4.233 11 C -0.124 4.124 12 C -0.029 4.029 13 C -0.565 4.565 14 H 0.045 0.955 15 C -0.191 4.191 16 N -0.598 5.598 17 Si 0.771 3.229 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.166 1.166 21 C -0.097 4.097 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.140 4.140 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.160 0.840 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.149 0.851 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.937 -0.053 22.479 25.936 hybrid contribution 0.301 -0.202 -0.305 0.474 sum -12.636 -0.255 22.174 25.523 Atomic orbital electron populations 1.21862 0.94349 1.01764 1.01962 1.21255 0.96469 0.95887 0.99222 1.21817 1.00198 0.96488 1.01762 1.21561 1.00479 0.93380 0.97053 1.20510 0.96892 0.93790 0.86581 0.91196 1.60643 1.36711 1.29244 1.04567 1.21737 0.92330 0.98375 0.89962 0.89800 1.22449 0.99837 0.98781 1.02245 1.21345 0.97091 0.98121 0.95875 1.19306 0.94524 0.94871 0.94148 1.21684 1.20413 1.01534 1.12901 0.95455 1.25949 0.94988 1.02611 0.95570 1.70083 1.25892 1.36797 1.27046 0.85704 0.80052 0.78871 0.78312 1.19729 1.21450 1.16562 1.20150 0.94033 0.99070 0.96475 1.21161 0.96301 0.98801 0.97724 1.21394 1.00405 0.99020 0.93910 1.21452 0.93247 1.00099 0.99850 1.21418 0.97050 0.98417 0.97343 1.21243 0.99401 0.99339 0.93989 0.93131 0.92420 0.91549 0.91710 0.94335 0.93313 0.91348 0.91171 0.93234 0.84012 0.92874 0.91735 0.91890 0.93487 0.93996 0.95668 0.97381 0.92792 0.86493 0.85094 0.84198 0.83945 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.49 71.98 0.61 -2.42 16 2 C -0.11 -2.92 2.40 -10.79 -0.03 -2.94 16 3 C -0.15 -3.80 9.19 71.98 0.66 -3.14 16 4 C -0.09 -2.14 4.32 30.60 0.13 -2.00 16 5 C 0.13 3.06 2.05 44.17 0.09 3.15 16 6 H 0.07 1.50 4.64 -2.39 -0.01 1.49 16 7 N -0.68 -19.26 4.88 -473.33 -2.31 -21.57 16 8 C 0.09 2.54 1.79 44.91 0.08 2.62 16 9 H 0.08 2.52 4.67 -2.39 -0.01 2.51 16 10 C -0.17 -4.19 9.14 71.98 0.66 -3.53 16 11 C -0.09 -3.40 4.83 30.59 0.15 -3.25 16 12 C 0.01 0.43 3.39 29.85 0.10 0.53 16 13 C -0.53 -31.58 9.66 25.60 0.25 -31.34 16 14 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 15 C 0.00 0.28 5.47 84.66 0.46 0.74 16 16 N -0.96 -62.24 13.96 21.45 0.30 -61.94 16 17 Si 0.95 46.74 27.47 68.60 1.88 48.62 16 18 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 20 H -0.24 -11.13 6.53 99.48 0.65 -10.48 16 21 C -0.10 -2.11 4.75 -19.87 -0.09 -2.20 16 22 C -0.12 -2.80 8.78 22.27 0.20 -2.61 16 23 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 25 C -0.12 -2.01 10.05 22.27 0.22 -1.78 16 26 C -0.12 -2.22 9.67 22.27 0.22 -2.00 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.16 5.83 -2.39 -0.01 1.15 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 2.15 4.59 -2.39 -0.01 2.14 16 31 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.34 9.49 7.17 -89.69 -0.64 8.85 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.32 6.99 -2.39 -0.02 1.31 16 39 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.02 1.22 7.20 -2.38 -0.02 1.20 16 43 H 0.01 0.38 6.57 -2.38 -0.02 0.37 16 44 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.12 3.00 7.55 -2.91 -0.02 2.98 16 46 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 48 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 49 H 0.13 1.96 8.04 -2.91 -0.02 1.94 16 Total: -1.00 -68.22 374.39 4.23 -63.99 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.20 Total: 25.31 kcal Atomic # 6 Polarization: -58.57 SS G_CDS: 4.15 Total: -54.42 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.01 Total: -83.51 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.62 kcal Total: -68.22 4.23 -63.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.571 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds