Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47399 * 119.99655 * 2 1 3 5 5 C 1.53000 * 109.47417 * 185.00110 * 4 2 1 6 6 C 1.50699 * 109.47391 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99997 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99862 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00146 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99943 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47257 * 60.00422 * 10 8 6 12 12 H 1.48500 * 109.47587 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47309 * 300.00818 * 10 8 6 14 14 N 1.46899 * 109.47547 * 239.99788 * 2 1 3 15 15 C 1.46899 * 110.99867 * 82.57359 * 14 2 1 16 16 H 1.09003 * 109.47199 * 324.41088 * 15 14 2 17 17 C 1.50700 * 109.47254 * 84.41319 * 15 14 2 18 18 C 1.38230 * 119.99807 * 39.72549 * 17 15 14 19 19 C 1.38236 * 120.00205 * 179.80907 * 18 17 15 20 20 C 1.38236 * 119.99711 * 0.40116 * 19 18 17 21 21 C 1.38237 * 119.99870 * 359.85575 * 20 19 18 22 22 C 1.38234 * 120.00327 * 359.95132 * 21 20 19 23 23 C 1.53001 * 109.47156 * 204.41334 * 15 14 2 24 24 C 1.53002 * 109.47385 * 65.33387 * 23 15 14 25 25 C 1.53012 * 109.47095 * 185.32988 * 23 15 14 26 26 C 1.52997 * 109.47265 * 305.32868 * 23 15 14 27 27 H 1.08991 * 109.47362 * 54.94265 * 1 2 3 28 28 H 1.09003 * 109.46939 * 174.94248 * 1 2 3 29 29 H 1.09005 * 109.47256 * 294.93764 * 1 2 3 30 30 H 1.08995 * 109.47427 * 305.00333 * 4 2 1 31 31 H 1.08999 * 109.47445 * 65.00310 * 4 2 1 32 32 H 1.09008 * 109.47211 * 300.00228 * 5 4 2 33 33 H 1.09001 * 109.47352 * 59.99951 * 5 4 2 34 34 H 0.96999 * 119.99803 * 179.97438 * 9 8 6 35 35 H 1.00897 * 111.00716 * 206.52758 * 14 2 1 36 36 H 1.08005 * 120.00402 * 359.97438 * 18 17 15 37 37 H 1.07998 * 120.00608 * 180.22935 * 19 18 17 38 38 H 1.08004 * 120.00382 * 179.83043 * 20 19 18 39 39 H 1.08001 * 119.99819 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00150 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47490 * 63.32047 * 24 23 15 42 42 H 1.08996 * 109.47300 * 183.32998 * 24 23 15 43 43 H 1.09008 * 109.46220 * 303.32346 * 24 23 15 44 44 H 1.08993 * 109.46933 * 59.99948 * 25 23 15 45 45 H 1.09001 * 109.46798 * 180.02562 * 25 23 15 46 46 H 1.09003 * 109.46702 * 299.99762 * 25 23 15 47 47 H 1.08995 * 109.46880 * 60.00211 * 26 23 15 48 48 H 1.08995 * 109.47530 * 180.02562 * 26 23 15 49 49 H 1.09002 * 109.47100 * 300.00424 * 26 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0673 -1.3240 2.5438 7 1 3.3689 -1.8051 3.2126 8 6 5.4186 -1.3611 2.8150 9 7 6.2691 -0.7757 2.0004 10 14 6.0414 -2.2416 4.3402 11 1 5.6480 -3.6724 4.2811 12 1 7.5214 -2.1369 4.4027 13 1 5.4497 -1.6153 5.5496 14 7 2.0197 -0.6925 -1.1994 15 6 2.0281 0.2075 -2.3603 16 1 1.1744 0.8828 -2.3027 17 6 3.3038 1.0097 -2.3649 18 6 4.4988 0.4096 -2.0146 19 6 5.6697 1.1444 -2.0225 20 6 5.6443 2.4814 -2.3729 21 6 4.4484 3.0828 -2.7181 22 6 3.2781 2.3470 -2.7139 23 6 1.9398 -0.6175 -3.6458 24 6 0.5863 -1.3285 -3.7037 25 6 2.0821 0.3075 -4.8563 26 6 3.0628 -1.6565 -3.6632 27 1 -0.3633 0.5902 -0.8411 28 1 -0.3633 -1.0237 -0.0906 29 1 -0.3634 0.4333 0.9319 30 1 1.6054 -0.2617 2.1370 31 1 1.7518 -1.7714 1.2057 32 1 3.9995 -1.0727 0.4259 33 1 3.8532 0.4371 1.3573 34 1 7.2197 -0.8015 2.1914 35 1 2.9348 -1.0868 -1.0410 36 1 4.5182 -0.6340 -1.7372 37 1 6.6039 0.6747 -1.7524 38 1 6.5586 3.0562 -2.3765 39 1 4.4285 4.1275 -2.9913 40 1 2.3440 2.8168 -2.9840 41 1 -0.2117 -0.5874 -3.7510 42 1 0.5464 -1.9624 -4.5895 43 1 0.4599 -1.9422 -2.8117 44 1 3.0464 0.8140 -4.8151 45 1 2.0188 -0.2802 -5.7721 46 1 1.2820 1.0477 -4.8439 47 1 2.9614 -2.3154 -2.8009 48 1 3.0002 -2.2439 -4.5792 49 1 4.0271 -1.1500 -3.6220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = -3.873212 kcal Electronic energy + Delta-G solvation = -24679.569631 eV Core-core repulsion = 21605.223383 eV Total energy + Delta-G solvation = -3074.346248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.01447 -37.33909 -35.85715 -33.03813 -31.58829 -30.68210 -29.87052 -28.74175 -27.05852 -26.85647 -25.39272 -24.39125 -22.19341 -21.49795 -20.93777 -19.40800 -18.42312 -16.89972 -16.15473 -15.46951 -15.13501 -15.02511 -14.50821 -14.35613 -14.03327 -13.79716 -13.42641 -13.07136 -12.95506 -12.51632 -12.36143 -12.22471 -12.12276 -11.97509 -11.74060 -11.66715 -11.44192 -11.33937 -11.20047 -11.04304 -10.86987 -10.77737 -10.53662 -10.52735 -10.32147 -10.28262 -10.06125 -9.72044 -9.23427 -8.99474 -8.50383 -8.34370 -8.32018 -7.91568 -5.98047 -3.99692 1.70883 1.78348 3.33912 3.38193 3.41079 4.14462 4.47340 4.55868 4.87641 5.08199 5.18851 5.23669 5.32944 5.35324 5.37989 5.48864 5.57935 5.68233 5.72792 5.77051 5.83635 5.90013 5.92609 5.95280 6.00357 6.03329 6.11756 6.20571 6.24431 6.25758 6.34570 6.38461 6.41977 6.43868 6.53884 6.58190 6.62692 6.68128 6.80098 6.90888 6.96882 6.97288 7.13574 7.36908 7.59831 7.66342 7.85191 7.94883 8.02384 8.45555 9.06332 9.63923 11.12467 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.005496 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.626740 B = 5093.531015 C = 6028.018299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.026 3.974 6 C -0.520 4.520 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.889 3.111 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.675 5.675 15 C 0.136 3.864 16 H 0.078 0.922 17 C -0.103 4.103 18 C -0.098 4.098 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.049 4.049 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.148 4.148 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.259 0.741 35 H 0.352 0.648 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.047 0.953 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 4.142 -13.479 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.152 4.152 5 C -0.011 4.011 6 C -0.558 4.558 7 H 0.071 0.929 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.717 3.283 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.309 5.309 15 C 0.026 3.974 16 H 0.096 0.904 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.049 4.049 24 C -0.189 4.189 25 C -0.200 4.200 26 C -0.206 4.206 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.177 0.823 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.066 0.934 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.685 3.873 -13.626 16.116 hybrid contribution 1.344 0.260 1.174 1.803 sum -6.341 4.133 -12.452 14.572 Atomic orbital electron populations 1.21802 0.95882 1.01607 1.00052 1.21570 0.94241 0.96260 0.90629 0.94515 1.21816 0.99809 0.99327 0.94289 1.19086 0.88633 0.96744 0.96668 1.21205 0.91896 1.34249 1.08450 0.92893 1.24984 0.97085 0.95599 0.96538 1.69951 1.02262 1.43956 1.36938 0.86717 0.77557 0.80292 0.83767 1.20290 1.21377 1.20373 1.60827 1.33289 1.33433 1.03351 1.20603 0.93289 0.92081 0.91471 0.90384 1.20627 0.96300 0.94581 0.99007 1.21024 0.92034 1.00341 0.98182 1.21163 0.98723 0.94204 0.97957 1.21078 0.97709 0.95228 1.00475 1.21010 0.92954 0.99261 1.01245 1.20900 0.97765 0.93839 1.01290 1.20402 0.96163 0.95123 0.93224 1.21756 0.95270 0.99979 1.01867 1.21926 1.01788 0.99112 0.97175 1.21998 0.98181 0.98665 1.01709 0.93988 0.92312 0.93143 0.92947 0.92588 0.96738 0.97048 0.93128 0.82319 0.85785 0.85977 0.86732 0.86861 0.86944 0.93664 0.93694 0.91002 0.92341 0.93054 0.93170 0.91526 0.93412 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.34 37.16 0.35 -1.63 16 2 C 0.08 1.43 2.48 -67.72 -0.17 1.26 16 3 H 0.04 0.70 7.64 -51.93 -0.40 0.30 16 4 C -0.11 -2.36 4.76 -26.73 -0.13 -2.49 16 5 C 0.03 0.65 4.80 -27.88 -0.13 0.51 16 6 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 N -0.67 -10.87 4.80 -100.96 -0.48 -11.36 16 15 C 0.14 1.93 1.42 -68.86 -0.10 1.83 16 16 H 0.08 1.10 6.85 -51.93 -0.36 0.74 16 17 C -0.10 -1.58 3.30 -104.62 -0.35 -1.92 16 18 C -0.10 -1.66 7.12 -39.58 -0.28 -1.94 16 19 C -0.10 -1.72 10.05 -39.58 -0.40 -2.12 16 20 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 21 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 22 C -0.12 -1.69 8.70 -39.58 -0.34 -2.03 16 23 C -0.05 -0.60 0.62 -154.50 -0.10 -0.70 16 24 C -0.13 -1.54 8.40 37.16 0.31 -1.23 16 25 C -0.14 -1.61 7.92 37.16 0.29 -1.31 16 26 C -0.15 -1.94 7.27 37.16 0.27 -1.67 16 27 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.01 0.37 6.00 -51.92 -0.31 0.06 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.35 6.40 3.33 -39.29 -0.13 6.27 16 36 H 0.12 2.25 5.18 -52.48 -0.27 1.97 16 37 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 38 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.11 1.38 8.04 -52.49 -0.42 0.96 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.94 7.67 -51.92 -0.40 0.54 16 44 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.95 7.11 -51.93 -0.37 0.58 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.81 5.59 -51.93 -0.29 0.52 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -28.52 372.73 -9.83 -38.36 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.71 Total: 7.35 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: -1.97 Total: -31.22 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.25 Total: -36.73 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.52 -9.83 -38.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.484 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds