Wall clock time and date at job start Tue Mar 31 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47399 * 119.99655 * 2 1 3 5 5 C 1.53000 * 109.47417 * 185.00110 * 4 2 1 6 6 C 1.50699 * 109.47391 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99997 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99862 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00146 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99943 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47257 * 60.00422 * 10 8 6 12 12 H 1.48500 * 109.47587 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47309 * 300.00818 * 10 8 6 14 14 N 1.46899 * 109.47547 * 239.99788 * 2 1 3 15 15 C 1.46899 * 110.99867 * 82.57359 * 14 2 1 16 16 H 1.09003 * 109.47199 * 324.41088 * 15 14 2 17 17 C 1.50700 * 109.47254 * 84.41319 * 15 14 2 18 18 C 1.38230 * 119.99807 * 39.72549 * 17 15 14 19 19 C 1.38236 * 120.00205 * 179.80907 * 18 17 15 20 20 C 1.38236 * 119.99711 * 0.40116 * 19 18 17 21 21 C 1.38237 * 119.99870 * 359.85575 * 20 19 18 22 22 C 1.38234 * 120.00327 * 359.95132 * 21 20 19 23 23 C 1.53001 * 109.47156 * 204.41334 * 15 14 2 24 24 C 1.53002 * 109.47385 * 65.33387 * 23 15 14 25 25 C 1.53012 * 109.47095 * 185.32988 * 23 15 14 26 26 C 1.52997 * 109.47265 * 305.32868 * 23 15 14 27 27 H 1.08991 * 109.47362 * 54.94265 * 1 2 3 28 28 H 1.09003 * 109.46939 * 174.94248 * 1 2 3 29 29 H 1.09005 * 109.47256 * 294.93764 * 1 2 3 30 30 H 1.08995 * 109.47427 * 305.00333 * 4 2 1 31 31 H 1.08999 * 109.47445 * 65.00310 * 4 2 1 32 32 H 1.09008 * 109.47211 * 300.00228 * 5 4 2 33 33 H 1.09001 * 109.47352 * 59.99951 * 5 4 2 34 34 H 0.96999 * 119.99803 * 179.97438 * 9 8 6 35 35 H 1.00897 * 111.00716 * 206.52758 * 14 2 1 36 36 H 1.08005 * 120.00402 * 359.97438 * 18 17 15 37 37 H 1.07998 * 120.00608 * 180.22935 * 19 18 17 38 38 H 1.08004 * 120.00382 * 179.83043 * 20 19 18 39 39 H 1.08001 * 119.99819 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00150 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47490 * 63.32047 * 24 23 15 42 42 H 1.08996 * 109.47300 * 183.32998 * 24 23 15 43 43 H 1.09008 * 109.46220 * 303.32346 * 24 23 15 44 44 H 1.08993 * 109.46933 * 59.99948 * 25 23 15 45 45 H 1.09001 * 109.46798 * 180.02562 * 25 23 15 46 46 H 1.09003 * 109.46702 * 299.99762 * 25 23 15 47 47 H 1.08995 * 109.46880 * 60.00211 * 26 23 15 48 48 H 1.08995 * 109.47530 * 180.02562 * 26 23 15 49 49 H 1.09002 * 109.47100 * 300.00424 * 26 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0673 -1.3240 2.5438 7 1 3.3689 -1.8051 3.2126 8 6 5.4186 -1.3611 2.8150 9 7 6.2691 -0.7757 2.0004 10 14 6.0414 -2.2416 4.3402 11 1 5.6480 -3.6724 4.2811 12 1 7.5214 -2.1369 4.4027 13 1 5.4497 -1.6153 5.5496 14 7 2.0197 -0.6925 -1.1994 15 6 2.0281 0.2075 -2.3603 16 1 1.1744 0.8828 -2.3027 17 6 3.3038 1.0097 -2.3649 18 6 4.4988 0.4096 -2.0146 19 6 5.6697 1.1444 -2.0225 20 6 5.6443 2.4814 -2.3729 21 6 4.4484 3.0828 -2.7181 22 6 3.2781 2.3470 -2.7139 23 6 1.9398 -0.6175 -3.6458 24 6 0.5863 -1.3285 -3.7037 25 6 2.0821 0.3075 -4.8563 26 6 3.0628 -1.6565 -3.6632 27 1 -0.3633 0.5902 -0.8411 28 1 -0.3633 -1.0237 -0.0906 29 1 -0.3634 0.4333 0.9319 30 1 1.6054 -0.2617 2.1370 31 1 1.7518 -1.7714 1.2057 32 1 3.9995 -1.0727 0.4259 33 1 3.8532 0.4371 1.3573 34 1 7.2197 -0.8015 2.1914 35 1 2.9348 -1.0868 -1.0410 36 1 4.5182 -0.6340 -1.7372 37 1 6.6039 0.6747 -1.7524 38 1 6.5586 3.0562 -2.3765 39 1 4.4285 4.1275 -2.9913 40 1 2.3440 2.8168 -2.9840 41 1 -0.2117 -0.5874 -3.7510 42 1 0.5464 -1.9624 -4.5895 43 1 0.4599 -1.9422 -2.8117 44 1 3.0464 0.8140 -4.8151 45 1 2.0188 -0.2802 -5.7721 46 1 1.2820 1.0477 -4.8439 47 1 2.9614 -2.3154 -2.8009 48 1 3.0002 -2.2439 -4.5792 49 1 4.0271 -1.1500 -3.6220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:43 Heat of formation + Delta-G solvation = -16.823397 kcal Electronic energy + Delta-G solvation = -24680.131193 eV Core-core repulsion = 21605.223383 eV Total energy + Delta-G solvation = -3074.907810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19641 -38.56831 -37.21892 -35.03541 -32.95333 -31.88266 -31.53168 -30.07139 -28.12164 -27.79297 -27.09604 -25.80297 -23.51174 -23.10965 -22.24363 -20.90859 -19.50645 -18.58351 -17.85552 -16.80957 -16.54986 -16.28295 -16.20389 -15.62713 -15.19903 -14.88038 -14.71632 -14.48452 -14.36504 -14.22799 -13.82277 -13.42766 -13.36720 -13.13608 -13.06751 -12.91896 -12.82753 -12.70900 -12.58461 -12.41325 -12.35077 -12.21340 -12.06279 -11.74429 -11.62837 -11.48892 -11.42981 -11.29231 -11.20262 -10.88302 -10.51656 -9.72825 -9.53388 -9.23036 -8.16961 -6.27389 0.51150 0.56574 1.38357 1.40481 1.48114 2.40805 2.93592 3.14867 3.30689 3.76544 3.99865 4.03577 4.15440 4.18239 4.20006 4.27812 4.35628 4.39433 4.51854 4.57602 4.66360 4.77583 4.81954 4.82834 4.87144 4.95588 5.03444 5.04736 5.08499 5.09431 5.14512 5.17621 5.18309 5.22053 5.27837 5.34929 5.42672 5.48389 5.54936 5.58437 5.61340 5.66834 5.70006 5.73305 5.79050 5.87335 6.17825 6.28220 6.34806 6.49798 6.87983 7.40744 8.92864 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.005496 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.626740 B = 5093.531015 C = 6028.018299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.090 3.910 3 H 0.020 0.980 4 C -0.104 4.104 5 C 0.039 3.961 6 C -0.546 4.546 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.922 5.922 10 Si 0.957 3.043 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.270 1.270 14 N -0.671 5.671 15 C 0.139 3.861 16 H 0.089 0.911 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.045 4.045 24 C -0.127 4.127 25 C -0.137 4.137 26 C -0.145 4.145 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.000 1.000 33 H -0.024 1.024 34 H 0.261 0.739 35 H 0.338 0.662 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 4.941 -14.193 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.020 4.020 3 H 0.038 0.962 4 C -0.142 4.142 5 C 0.002 3.998 6 C -0.584 4.584 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.562 5.562 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.195 1.195 14 N -0.304 5.304 15 C 0.028 3.972 16 H 0.107 0.893 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.045 4.045 24 C -0.184 4.184 25 C -0.195 4.195 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.018 0.982 33 H -0.006 1.006 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.531 4.672 -14.345 17.845 hybrid contribution 1.955 0.027 1.376 2.391 sum -7.576 4.699 -12.970 15.738 Atomic orbital electron populations 1.21709 0.93003 1.02301 1.01354 1.21465 0.96314 0.94643 0.89578 0.96238 1.21657 0.96458 0.99762 0.96321 1.18881 0.91801 0.93866 0.95235 1.21644 0.92493 1.34733 1.09493 0.92736 1.25855 0.97335 0.96285 0.99709 1.70091 1.02506 1.44922 1.38642 0.85636 0.77007 0.79333 0.79864 1.19337 1.20900 1.19535 1.60924 1.32236 1.33700 1.03526 1.20718 0.92994 0.92066 0.91393 0.89334 1.20734 0.95848 0.95394 0.98760 1.20914 0.93237 0.99476 0.99734 1.21233 0.98272 0.95639 0.99738 1.21331 0.99346 0.94360 1.00046 1.21404 0.92164 1.00761 0.99807 1.21253 0.99122 0.93200 1.00270 1.20396 0.96305 0.94930 0.92891 1.21704 0.94827 1.00144 1.01705 1.21871 1.01639 0.99155 0.96789 1.21958 0.98028 0.98750 1.01537 0.92022 0.92014 0.92390 0.92959 0.92701 0.98181 1.00572 0.93052 0.83952 0.88205 0.87497 0.84844 0.83564 0.84205 0.92402 0.92480 0.92555 0.93537 0.91851 0.91709 0.93346 0.91997 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.34 71.98 0.67 -2.75 16 2 C 0.09 3.10 2.48 44.91 0.11 3.21 16 3 H 0.02 0.74 7.64 -2.39 -0.02 0.72 16 4 C -0.10 -4.39 4.76 30.59 0.15 -4.24 16 5 C 0.04 2.07 4.80 29.85 0.14 2.22 16 6 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 7 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.92 -55.81 13.29 21.45 0.28 -55.52 16 10 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 N -0.67 -21.91 4.80 -473.32 -2.27 -24.18 16 15 C 0.14 3.81 1.42 44.17 0.06 3.87 16 16 H 0.09 2.27 6.85 -2.39 -0.02 2.25 16 17 C -0.11 -3.23 3.30 -19.87 -0.07 -3.29 16 18 C -0.12 -4.17 7.12 22.27 0.16 -4.02 16 19 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 20 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 21 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 22 C -0.12 -3.19 8.70 22.27 0.19 -3.00 16 23 C -0.04 -1.05 0.62 -52.18 -0.03 -1.09 16 24 C -0.13 -2.69 8.40 71.98 0.60 -2.08 16 25 C -0.14 -2.76 7.92 71.99 0.57 -2.19 16 26 C -0.15 -3.87 7.27 71.98 0.52 -3.35 16 27 H 0.06 1.44 7.32 -2.39 -0.02 1.43 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.00 0.00 6.00 -2.38 -0.01 -0.01 16 33 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.34 13.01 3.33 -89.70 -0.30 12.71 16 36 H 0.10 4.02 5.18 -2.91 -0.02 4.01 16 37 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.14 2.93 8.04 -2.91 -0.02 2.91 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.38 7.67 -2.38 -0.02 1.36 16 44 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.05 1.44 7.11 -2.39 -0.02 1.42 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.04 1.29 5.59 -2.39 -0.01 1.28 16 Total: -1.00 -63.18 372.73 5.09 -58.10 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.59 Total: 32.98 kcal Atomic # 6 Polarization: -62.73 SS G_CDS: 4.45 Total: -58.28 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.99 Total: -79.70 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -63.18 5.09 -58.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.275 kcal (2) G-P(sol) polarization free energy of solvation -63.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds