Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 C 1.53002 * 109.47140 * 185.00206 * 4 2 1 6 6 C 1.50702 * 109.47074 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99892 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99942 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00062 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46941 * 90.00194 * 10 8 6 12 12 H 1.48499 * 109.46901 * 210.00257 * 10 8 6 13 13 H 1.48495 * 109.47016 * 329.99706 * 10 8 6 14 14 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 15 15 C 1.46901 * 110.99870 * 85.00132 * 14 2 1 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 2 17 17 C 1.38242 * 119.99531 * 269.72281 * 16 15 14 18 18 C 1.38237 * 119.99538 * 179.76506 * 17 16 15 19 19 C 1.38237 * 120.00038 * 0.51419 * 18 17 16 20 20 C 1.50699 * 119.99962 * 179.72637 * 19 18 17 21 21 C 1.53002 * 109.47001 * 240.01826 * 20 19 18 22 22 C 1.53000 * 109.47165 * 0.02562 * 20 19 18 23 23 C 1.53000 * 109.47661 * 120.01615 * 20 19 18 24 24 C 1.38232 * 120.00189 * 359.73644 * 19 18 17 25 25 C 1.38231 * 120.00460 * 89.99687 * 16 15 14 26 26 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 27 27 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 28 28 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47142 * 304.99743 * 4 2 1 30 30 H 1.08991 * 109.47453 * 64.99824 * 4 2 1 31 31 H 1.08993 * 109.46652 * 299.99542 * 5 4 2 32 32 H 1.09003 * 109.46959 * 59.99778 * 5 4 2 33 33 H 0.97002 * 119.99492 * 180.02562 * 9 8 6 34 34 H 1.00901 * 110.99869 * 321.04843 * 14 2 1 35 35 H 1.09004 * 109.47031 * 299.99620 * 15 14 2 36 36 H 1.08995 * 109.47111 * 59.99900 * 15 14 2 37 37 H 1.08000 * 120.00220 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.99670 * 180.23047 * 18 17 16 39 39 H 1.09000 * 109.47093 * 59.99240 * 21 20 19 40 40 H 1.09000 * 109.47208 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.46791 * 299.99915 * 21 20 19 42 42 H 1.09004 * 109.47252 * 60.00335 * 22 20 19 43 43 H 1.09000 * 109.47246 * 180.02562 * 22 20 19 44 44 H 1.08997 * 109.47455 * 300.00603 * 22 20 19 45 45 H 1.08996 * 109.46915 * 59.99604 * 23 20 19 46 46 H 1.09000 * 109.47373 * 179.97438 * 23 20 19 47 47 H 1.09001 * 109.46676 * 300.00199 * 23 20 19 48 48 H 1.07995 * 120.00254 * 179.97438 * 24 19 18 49 49 H 1.08001 * 119.99947 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.0672 -1.3233 2.5444 7 1 3.3686 -1.8031 3.2139 8 6 5.4184 -1.3602 2.8157 9 7 5.8568 -1.9802 3.8895 10 14 6.6266 -0.5296 1.6581 11 1 6.8321 0.8781 2.0839 12 1 7.9234 -1.2522 1.6944 13 1 6.0846 -0.5546 0.2758 14 7 2.0197 -0.6925 -1.1995 15 6 2.0825 0.2226 -2.3469 16 6 2.5874 -0.5218 -3.5560 17 6 3.9431 -0.5696 -3.8219 18 6 4.4066 -1.2565 -4.9283 19 6 3.5136 -1.8866 -5.7748 20 6 4.0185 -2.6303 -6.9844 21 6 3.4202 -2.0119 -8.2496 22 6 5.5443 -2.5342 -7.0420 23 6 3.6034 -4.0998 -6.8897 24 6 2.1575 -1.8344 -5.5118 25 6 1.6944 -1.1519 -4.4024 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7715 1.2055 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4370 1.3573 33 1 6.8075 -2.0059 4.0805 34 1 1.4495 -1.4979 -1.4101 35 1 1.0871 0.6163 -2.5526 36 1 2.7589 1.0462 -2.1182 37 1 4.6405 -0.0738 -3.1628 38 1 5.4661 -1.2970 -5.1340 39 1 3.7159 -0.9649 -8.3170 40 1 3.7857 -2.5495 -9.1245 41 1 2.3332 -2.0805 -8.2084 42 1 5.9704 -2.9749 -6.1406 43 1 5.9095 -3.0717 -7.9171 44 1 5.8403 -1.4874 -7.1093 45 1 2.5164 -4.1684 -6.8485 46 1 3.9682 -4.6376 -7.7648 47 1 4.0296 -4.5403 -5.9883 48 1 1.4599 -2.3263 -6.1733 49 1 0.6349 -1.1105 -4.1974 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -8.495009 kcal Electronic energy + Delta-G solvation = -22899.837348 eV Core-core repulsion = 19825.290684 eV Total energy + Delta-G solvation = -3074.546664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00132 -37.64724 -36.29011 -33.31451 -32.01233 -31.09856 -30.08642 -28.65198 -27.56734 -27.47575 -25.46773 -24.64150 -22.34859 -21.67287 -21.01038 -19.84130 -19.25700 -16.75558 -16.46137 -15.62000 -15.27764 -15.10355 -14.60703 -14.46960 -14.15881 -14.00271 -13.65658 -13.47337 -13.32375 -13.02800 -12.71327 -12.59623 -12.41337 -12.30478 -12.09316 -11.93141 -11.91659 -11.78745 -11.43245 -11.38451 -11.26490 -11.14174 -10.86385 -10.66271 -10.57867 -10.40551 -9.78758 -9.61112 -9.44130 -8.97908 -8.85663 -8.54976 -8.40030 -7.96140 -5.91700 -3.87401 1.35373 1.46956 3.40333 3.47170 3.55651 3.73691 4.40771 4.54088 4.58293 4.60692 4.78900 4.93556 4.97884 5.03828 5.09700 5.27518 5.30375 5.37354 5.40468 5.44232 5.46731 5.49858 5.52873 5.61091 5.63003 5.64126 5.71042 5.75733 5.79454 5.84693 6.01494 6.03513 6.08088 6.09437 6.13062 6.21965 6.30526 6.47606 6.56425 6.63919 6.71496 6.76033 7.04789 7.13928 7.36422 7.55371 7.71192 7.79380 7.97668 8.69004 9.14706 9.72735 11.22275 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.003778 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.284125 B = 7409.299395 C = 8743.744030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 H 0.072 0.928 4 C -0.089 4.089 5 C -0.006 4.006 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.879 3.121 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.261 1.261 14 N -0.669 5.669 15 C 0.098 3.902 16 C -0.080 4.080 17 C -0.093 4.093 18 C -0.122 4.122 19 C -0.075 4.075 20 C -0.029 4.029 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.114 4.114 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.002 0.998 33 H 0.260 0.740 34 H 0.338 0.662 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.116 0.884 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 1.660 -24.880 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.090 0.910 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.707 3.293 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.299 5.299 15 C -0.031 4.031 16 C -0.080 4.080 17 C -0.111 4.111 18 C -0.139 4.139 19 C -0.075 4.075 20 C -0.029 4.029 21 C -0.194 4.194 22 C -0.202 4.202 23 C -0.196 4.196 24 C -0.136 4.136 25 C -0.132 4.132 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.134 0.866 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.989 1.706 -24.612 25.642 hybrid contribution -0.244 0.476 -0.572 0.783 sum -7.233 2.182 -25.183 26.292 Atomic orbital electron populations 1.22519 0.98322 1.01715 1.01357 1.21797 0.91305 0.98290 0.91508 0.91005 1.21447 0.98972 0.99049 0.93286 1.19472 0.91542 0.95771 0.97580 1.21271 0.92796 1.33886 1.07408 0.91438 1.25028 0.98452 0.95141 0.95067 1.69937 1.14379 1.44172 1.26536 0.86771 0.80400 0.79427 0.82730 1.20650 1.21730 1.18518 1.60591 1.57877 1.08927 1.02527 1.20906 0.98883 0.94927 0.88390 1.19824 0.93676 0.98713 0.95801 1.21104 0.95136 0.98419 0.96454 1.21175 0.99696 0.98127 0.94942 1.19749 0.93406 0.98224 0.96134 1.19485 0.95655 0.94956 0.92831 1.21880 1.00714 1.00711 0.96114 1.21970 0.94292 1.01955 1.01992 1.21890 1.01415 0.94346 1.01922 1.20838 0.94928 1.00129 0.97725 1.20968 0.99086 0.98141 0.95022 0.92098 0.93699 0.92641 0.92906 0.92877 0.94998 0.98018 0.93009 0.84407 0.95011 0.90420 0.85873 0.85824 0.92567 0.92503 0.92526 0.92051 0.92514 0.92288 0.92506 0.92509 0.92282 0.86588 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.16 37.16 0.34 -1.98 16 2 C 0.08 1.28 2.59 -67.71 -0.18 1.10 16 3 H 0.07 1.16 7.80 -51.93 -0.40 0.76 16 4 C -0.09 -1.80 4.83 -26.73 -0.13 -1.93 16 5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.26 16 6 C -0.52 -15.27 9.66 -34.44 -0.33 -15.61 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.91 -29.09 13.96 55.43 0.77 -28.32 16 10 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 14 N -0.67 -10.35 5.69 -107.99 -0.61 -10.97 16 15 C 0.10 1.30 5.61 -4.98 -0.03 1.27 16 16 C -0.08 -1.04 5.39 -104.62 -0.56 -1.61 16 17 C -0.09 -1.26 9.70 -39.58 -0.38 -1.64 16 18 C -0.12 -1.48 8.98 -39.58 -0.36 -1.83 16 19 C -0.07 -0.82 4.76 -104.62 -0.50 -1.32 16 20 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 21 C -0.14 -1.05 8.29 37.16 0.31 -0.74 16 22 C -0.14 -1.20 7.13 37.16 0.27 -0.94 16 23 C -0.14 -1.16 8.29 37.16 0.31 -0.85 16 24 C -0.12 -1.28 8.71 -39.58 -0.34 -1.62 16 25 C -0.11 -1.31 9.70 -39.58 -0.38 -1.70 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 28 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.82 6.81 -51.93 -0.35 0.46 16 32 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 34 H 0.34 4.90 8.46 -39.29 -0.33 4.57 16 35 H 0.03 0.38 7.38 -51.93 -0.38 -0.01 16 36 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.12 1.34 5.90 -52.49 -0.31 1.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 42 H 0.06 0.54 7.52 -51.93 -0.39 0.15 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 45 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.12 1.04 7.10 -52.49 -0.37 0.67 16 49 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -32.00 382.88 -10.19 -42.19 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -9.14 Total: 1.53 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -2.31 Total: -28.23 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.16 Total: -39.28 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.00 -10.19 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.692 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds