Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 C 1.53002 * 109.47140 * 185.00206 * 4 2 1 6 6 C 1.50702 * 109.47074 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99892 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99942 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00062 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46941 * 90.00194 * 10 8 6 12 12 H 1.48499 * 109.46901 * 210.00257 * 10 8 6 13 13 H 1.48495 * 109.47016 * 329.99706 * 10 8 6 14 14 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 15 15 C 1.46901 * 110.99870 * 85.00132 * 14 2 1 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 2 17 17 C 1.38242 * 119.99531 * 269.72281 * 16 15 14 18 18 C 1.38237 * 119.99538 * 179.76506 * 17 16 15 19 19 C 1.38237 * 120.00038 * 0.51419 * 18 17 16 20 20 C 1.50699 * 119.99962 * 179.72637 * 19 18 17 21 21 C 1.53002 * 109.47001 * 240.01826 * 20 19 18 22 22 C 1.53000 * 109.47165 * 0.02562 * 20 19 18 23 23 C 1.53000 * 109.47661 * 120.01615 * 20 19 18 24 24 C 1.38232 * 120.00189 * 359.73644 * 19 18 17 25 25 C 1.38231 * 120.00460 * 89.99687 * 16 15 14 26 26 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 27 27 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 28 28 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47142 * 304.99743 * 4 2 1 30 30 H 1.08991 * 109.47453 * 64.99824 * 4 2 1 31 31 H 1.08993 * 109.46652 * 299.99542 * 5 4 2 32 32 H 1.09003 * 109.46959 * 59.99778 * 5 4 2 33 33 H 0.97002 * 119.99492 * 180.02562 * 9 8 6 34 34 H 1.00901 * 110.99869 * 321.04843 * 14 2 1 35 35 H 1.09004 * 109.47031 * 299.99620 * 15 14 2 36 36 H 1.08995 * 109.47111 * 59.99900 * 15 14 2 37 37 H 1.08000 * 120.00220 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.99670 * 180.23047 * 18 17 16 39 39 H 1.09000 * 109.47093 * 59.99240 * 21 20 19 40 40 H 1.09000 * 109.47208 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.46791 * 299.99915 * 21 20 19 42 42 H 1.09004 * 109.47252 * 60.00335 * 22 20 19 43 43 H 1.09000 * 109.47246 * 180.02562 * 22 20 19 44 44 H 1.08997 * 109.47455 * 300.00603 * 22 20 19 45 45 H 1.08996 * 109.46915 * 59.99604 * 23 20 19 46 46 H 1.09000 * 109.47373 * 179.97438 * 23 20 19 47 47 H 1.09001 * 109.46676 * 300.00199 * 23 20 19 48 48 H 1.07995 * 120.00254 * 179.97438 * 24 19 18 49 49 H 1.08001 * 119.99947 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.0672 -1.3233 2.5444 7 1 3.3686 -1.8031 3.2139 8 6 5.4184 -1.3602 2.8157 9 7 5.8568 -1.9802 3.8895 10 14 6.6266 -0.5296 1.6581 11 1 6.8321 0.8781 2.0839 12 1 7.9234 -1.2522 1.6944 13 1 6.0846 -0.5546 0.2758 14 7 2.0197 -0.6925 -1.1995 15 6 2.0825 0.2226 -2.3469 16 6 2.5874 -0.5218 -3.5560 17 6 3.9431 -0.5696 -3.8219 18 6 4.4066 -1.2565 -4.9283 19 6 3.5136 -1.8866 -5.7748 20 6 4.0185 -2.6303 -6.9844 21 6 3.4202 -2.0119 -8.2496 22 6 5.5443 -2.5342 -7.0420 23 6 3.6034 -4.0998 -6.8897 24 6 2.1575 -1.8344 -5.5118 25 6 1.6944 -1.1519 -4.4024 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7715 1.2055 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4370 1.3573 33 1 6.8075 -2.0059 4.0805 34 1 1.4495 -1.4979 -1.4101 35 1 1.0871 0.6163 -2.5526 36 1 2.7589 1.0462 -2.1182 37 1 4.6405 -0.0738 -3.1628 38 1 5.4661 -1.2970 -5.1340 39 1 3.7159 -0.9649 -8.3170 40 1 3.7857 -2.5495 -9.1245 41 1 2.3332 -2.0805 -8.2084 42 1 5.9704 -2.9749 -6.1406 43 1 5.9095 -3.0717 -7.9171 44 1 5.8403 -1.4874 -7.1093 45 1 2.5164 -4.1684 -6.8485 46 1 3.9682 -4.6376 -7.7648 47 1 4.0296 -4.5403 -5.9883 48 1 1.4599 -2.3263 -6.1733 49 1 0.6349 -1.1105 -4.1974 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -25.570474 kcal Electronic energy + Delta-G solvation = -22900.577796 eV Core-core repulsion = 19825.290684 eV Total energy + Delta-G solvation = -3075.287112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84613 -38.76870 -37.24809 -35.25031 -33.57724 -31.97170 -31.67196 -29.75556 -28.22910 -28.07898 -27.14089 -25.82519 -23.23283 -22.88491 -22.45721 -21.39641 -20.03288 -18.83626 -17.52540 -16.63224 -16.44237 -16.29703 -16.02953 -15.57606 -15.13825 -14.99145 -14.81000 -14.52234 -14.40057 -14.28950 -14.20797 -13.89213 -13.52913 -13.35299 -13.11451 -13.05779 -12.87457 -12.77812 -12.68562 -12.53337 -12.28919 -12.18736 -12.02805 -11.80795 -11.67263 -11.49494 -11.44679 -11.35851 -11.32098 -11.08931 -10.72480 -9.76251 -9.46596 -9.10572 -8.27066 -6.28710 0.45223 0.56231 1.33960 1.37126 1.51706 2.38570 2.81696 3.09274 3.49013 3.69053 3.82683 3.97092 4.06134 4.10196 4.13481 4.19169 4.32958 4.40832 4.43022 4.49263 4.60537 4.68992 4.72616 4.74292 4.79966 4.86378 4.90715 4.93090 5.00999 5.02397 5.04070 5.04215 5.07636 5.18800 5.22132 5.24945 5.27939 5.37940 5.38328 5.45967 5.59678 5.61410 5.70454 5.78262 5.78568 5.79255 6.15213 6.26181 6.34439 6.59765 6.80026 7.35602 8.90191 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.003778 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.284125 B = 7409.299395 C = 8743.744030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.071 0.929 4 C -0.085 4.085 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.001 3.999 9 N -0.956 5.956 10 Si 0.951 3.049 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.249 1.249 14 N -0.688 5.688 15 C 0.104 3.896 16 C -0.094 4.094 17 C -0.116 4.116 18 C -0.133 4.133 19 C -0.076 4.076 20 C -0.030 4.030 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.004 0.996 33 H 0.264 0.736 34 H 0.343 0.657 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.138 0.862 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 2.288 -27.871 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.035 4.035 6 C -0.567 4.567 7 H 0.047 0.953 8 C -0.194 4.194 9 N -0.597 5.597 10 Si 0.774 3.226 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.173 1.173 14 N -0.319 5.319 15 C -0.024 4.024 16 C -0.094 4.094 17 C -0.134 4.134 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.030 4.030 21 C -0.191 4.191 22 C -0.202 4.202 23 C -0.195 4.195 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.156 0.844 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.900 2.339 -27.610 28.813 hybrid contribution 0.015 0.202 0.398 0.447 sum -7.885 2.541 -27.211 28.444 Atomic orbital electron populations 1.22389 0.95511 1.02380 1.02605 1.21557 0.93433 0.97290 0.89704 0.91038 1.21341 0.95860 0.99205 0.95873 1.19354 0.94687 0.94826 0.94649 1.21666 0.92567 1.33888 1.08564 0.95337 1.26006 1.00688 0.95895 0.96849 1.70086 1.15112 1.45879 1.28654 0.85643 0.77590 0.78683 0.80651 1.19224 1.21113 1.17273 1.60473 1.58502 1.09765 1.03198 1.20847 0.99734 0.94206 0.87616 1.19865 0.93679 0.99607 0.96245 1.21163 0.95524 0.99551 0.97200 1.21326 1.00428 0.98365 0.94959 1.20054 0.93529 0.97591 0.96472 1.19546 0.95910 0.95047 0.92476 1.21858 1.00981 1.00469 0.95815 1.21972 0.94091 1.02046 1.02131 1.21886 1.01693 0.93964 1.01918 1.21135 0.95244 0.99648 0.97730 1.21197 0.99837 0.97500 0.94757 0.91764 0.91508 0.92297 0.93236 0.93867 0.95650 0.97719 0.92691 0.83849 0.92933 0.91408 0.87258 0.85250 0.93053 0.91135 0.92022 0.93074 0.91132 0.92375 0.92020 0.91039 0.93719 0.84435 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 9.16 71.98 0.66 -3.28 16 2 C 0.09 2.72 2.59 44.91 0.12 2.84 16 3 H 0.07 2.18 7.80 -2.39 -0.02 2.17 16 4 C -0.08 -3.41 4.83 30.59 0.15 -3.26 16 5 C 0.00 0.11 3.93 29.85 0.12 0.23 16 6 C -0.53 -32.21 9.66 25.60 0.25 -31.96 16 7 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 8 C 0.00 0.09 5.47 84.65 0.46 0.55 16 9 N -0.96 -62.59 13.96 21.45 0.30 -62.29 16 10 Si 0.95 47.19 27.47 68.60 1.88 49.07 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 13 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 14 N -0.69 -20.36 5.69 -495.57 -2.82 -23.18 16 15 C 0.10 2.60 5.61 85.56 0.48 3.08 16 16 C -0.09 -2.33 5.39 -19.87 -0.11 -2.44 16 17 C -0.12 -3.12 9.70 22.27 0.22 -2.91 16 18 C -0.13 -3.16 8.98 22.27 0.20 -2.96 16 19 C -0.08 -1.56 4.76 -19.87 -0.09 -1.65 16 20 C -0.03 -0.47 0.85 -52.93 -0.05 -0.51 16 21 C -0.13 -1.70 8.29 71.98 0.60 -1.10 16 22 C -0.15 -2.19 7.13 71.98 0.51 -1.68 16 23 C -0.14 -2.01 8.29 71.98 0.60 -1.41 16 24 C -0.12 -2.31 8.71 22.27 0.19 -2.12 16 25 C -0.11 -2.39 9.70 22.27 0.22 -2.17 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.28 7.45 -2.39 -0.02 1.27 16 28 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.03 1.29 6.81 -2.39 -0.02 1.27 16 32 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 33 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 34 H 0.34 9.40 8.46 -89.69 -0.76 8.64 16 35 H 0.05 1.09 7.38 -2.39 -0.02 1.07 16 36 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 37 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.13 2.79 5.90 -2.91 -0.02 2.77 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.72 7.39 -2.39 -0.02 0.70 16 42 H 0.05 0.87 7.52 -2.39 -0.02 0.85 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.87 7.51 -2.39 -0.02 0.86 16 45 H 0.06 0.83 7.39 -2.39 -0.02 0.81 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 48 H 0.14 2.02 7.10 -2.91 -0.02 2.00 16 49 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -70.10 382.88 3.95 -66.15 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.07 Total: 21.01 kcal Atomic # 6 Polarization: -55.27 SS G_CDS: 4.52 Total: -50.76 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.52 Total: -85.47 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.88 Total: 49.07 kcal Total: -70.10 3.95 -66.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.575 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds