Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46986 * 2 1 4 4 C 1.52996 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99895 * 269.72772 * 5 4 3 7 7 C 1.38240 * 120.00062 * 180.32314 * 6 5 4 8 8 C 1.38235 * 119.99708 * 359.94741 * 7 6 5 9 9 C 1.50704 * 119.99518 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.46851 * 270.01692 * 9 8 7 11 11 C 1.46898 * 110.99962 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47354 * 35.00305 * 11 10 9 13 13 C 1.53001 * 109.47122 * 275.00324 * 11 10 9 14 14 C 1.53008 * 109.47304 * 155.00403 * 11 10 9 15 15 C 1.53002 * 109.46802 * 295.00439 * 14 11 10 16 16 C 1.50700 * 109.46935 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00223 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99886 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47220 * 90.00197 * 20 18 16 22 22 H 1.48506 * 109.46925 * 209.99976 * 20 18 16 23 23 H 1.48497 * 109.47176 * 330.00081 * 20 18 16 24 24 C 1.38234 * 120.00204 * 0.02562 * 8 7 6 25 25 C 1.38230 * 119.99885 * 0.02562 * 24 8 7 26 26 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47252 * 300.00017 * 1 2 3 28 28 H 1.08996 * 109.47190 * 60.00120 * 1 2 3 29 29 H 1.08994 * 109.47503 * 239.99963 * 2 1 3 30 30 H 1.09001 * 109.47176 * 119.99414 * 2 1 3 31 31 H 1.08994 * 109.47029 * 59.99673 * 3 2 1 32 32 H 1.09001 * 109.46684 * 299.99715 * 3 2 1 33 33 H 1.09003 * 109.47252 * 59.99983 * 4 3 2 34 34 H 1.09001 * 109.47630 * 300.00037 * 4 3 2 35 35 H 1.08001 * 120.00279 * 0.27436 * 6 5 4 36 36 H 1.07997 * 119.99868 * 179.97438 * 7 6 5 37 37 H 1.08990 * 109.47409 * 30.01905 * 9 8 7 38 38 H 1.08997 * 109.46925 * 150.02474 * 9 8 7 39 39 H 1.00897 * 111.00309 * 303.96327 * 10 9 8 40 40 H 1.09000 * 109.47240 * 299.99573 * 13 11 10 41 41 H 1.09001 * 109.47274 * 59.99716 * 13 11 10 42 42 H 1.09000 * 109.47250 * 180.02562 * 13 11 10 43 43 H 1.09003 * 109.46820 * 54.99548 * 14 11 10 44 44 H 1.08996 * 109.47105 * 174.99998 * 14 11 10 45 45 H 1.09010 * 109.46546 * 299.99500 * 15 14 11 46 46 H 1.08997 * 109.47618 * 59.99338 * 15 14 11 47 47 H 0.96998 * 119.99828 * 179.97438 * 19 18 16 48 48 H 1.07992 * 119.99701 * 179.97438 * 24 8 7 49 49 H 1.08000 * 120.00356 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3085 3.5124 -1.1974 7 6 4.7757 4.8135 -1.1980 8 6 5.0056 5.4658 -0.0011 9 6 5.5143 6.8844 -0.0018 10 7 6.9833 6.8777 0.0020 11 6 7.5160 8.2467 0.0020 12 1 6.8618 8.8911 0.5891 13 6 7.5874 8.7662 -1.4353 14 6 8.9178 8.2485 0.6152 15 6 8.8301 7.8482 2.0893 16 6 10.2108 7.8494 2.6932 17 1 11.0654 8.1093 2.0861 18 6 10.3830 7.5187 4.0205 19 7 9.3422 7.2027 4.7599 20 14 12.0946 7.5195 4.7689 21 1 12.3922 8.8649 5.3226 22 1 12.1595 6.5110 5.8570 23 1 13.0927 7.1832 3.7220 24 6 4.7688 4.8170 1.1963 25 6 4.3026 3.5157 1.1968 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9289 0.8908 35 1 4.1289 3.0028 -2.1325 36 1 4.9607 5.3204 -2.1335 37 1 5.1556 7.3986 -0.8934 38 1 5.1511 7.4010 0.8865 39 1 7.3405 6.3509 0.7849 40 1 8.2417 8.1218 -2.0225 41 1 6.5888 8.7649 -1.8722 42 1 7.9831 9.7818 -1.4353 43 1 9.5483 7.5368 0.0824 44 1 9.3482 9.2467 0.5347 45 1 8.1994 8.5600 2.6222 46 1 8.3995 6.8501 2.1698 47 1 9.4634 6.9698 5.6936 48 1 4.9487 5.3265 2.1313 49 1 4.1180 3.0085 2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = -37.697601 kcal Electronic energy + Delta-G solvation = -22143.427225 eV Core-core repulsion = 19067.614241 eV Total energy + Delta-G solvation = -3075.812984 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50926 -38.59072 -36.74377 -35.34862 -34.09040 -32.29249 -31.79223 -30.86973 -29.23457 -27.14876 -26.05753 -23.94115 -23.59620 -23.14616 -21.96923 -21.37208 -21.05094 -18.56662 -17.26819 -16.90820 -16.58772 -16.53756 -16.21302 -15.96480 -15.54148 -14.92767 -14.75146 -14.44916 -14.33745 -14.27568 -14.04659 -13.84987 -13.53900 -13.40410 -13.22507 -13.05002 -12.84972 -12.84273 -12.68011 -12.35361 -12.23697 -12.14107 -11.96349 -11.83127 -11.76359 -11.58445 -11.46867 -11.37300 -11.29392 -10.96862 -10.56399 -9.79040 -9.50881 -9.27049 -8.21690 -6.32359 0.41772 0.53926 1.38157 1.39371 1.50664 2.39394 2.78986 3.11255 3.45044 3.78126 3.89568 3.96716 4.06006 4.12637 4.15578 4.22837 4.32672 4.35981 4.38750 4.48174 4.57017 4.59094 4.67462 4.77465 4.79607 4.81170 4.85127 4.99034 4.99581 4.99907 5.03570 5.07326 5.15484 5.20094 5.21503 5.23649 5.32533 5.40401 5.44079 5.51405 5.51843 5.55240 5.68116 5.75459 5.76209 5.82521 6.13607 6.21743 6.24423 6.38550 6.84018 7.36724 8.89729 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.002814 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.405230 B = 9946.190163 C =11312.685027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.077 4.077 5 C -0.086 4.086 6 C -0.123 4.123 7 C -0.101 4.101 8 C -0.095 4.095 9 C 0.101 3.899 10 N -0.682 5.682 11 C 0.085 3.915 12 H 0.028 0.972 13 C -0.127 4.127 14 C -0.102 4.102 15 C 0.028 3.972 16 C -0.542 4.542 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.264 1.264 24 C -0.128 4.128 25 C -0.128 4.128 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.023 0.977 39 H 0.336 0.664 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.059 0.941 45 H -0.017 1.017 46 H -0.004 1.004 47 H 0.263 0.737 48 H 0.106 0.894 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 -10.590 -13.250 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.114 4.114 5 C -0.087 4.087 6 C -0.140 4.140 7 C -0.120 4.120 8 C -0.096 4.096 9 C -0.028 4.028 10 N -0.314 5.314 11 C -0.025 4.025 12 H 0.047 0.953 13 C -0.184 4.184 14 C -0.140 4.140 15 C -0.010 4.010 16 C -0.580 4.580 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.147 4.147 25 C -0.146 4.146 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.041 0.959 39 H 0.155 0.845 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.002 0.998 46 H 0.014 0.986 47 H 0.072 0.928 48 H 0.124 0.876 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.973 -10.692 -13.770 23.645 hybrid contribution 0.669 0.495 2.049 2.212 sum -15.304 -10.197 -11.721 21.807 Atomic orbital electron populations 1.21784 0.95635 1.01944 1.01772 1.21541 0.96093 0.96080 1.02408 1.21551 0.93733 0.97350 1.02007 1.20635 0.96035 0.91210 1.03497 1.20140 0.98622 0.97130 0.92767 1.21285 0.99757 0.94647 0.98341 1.21177 0.98168 0.95139 0.97491 1.19848 0.99845 0.96123 0.93737 1.20916 0.87994 0.92963 1.00913 1.60781 1.06504 1.14137 1.50004 1.21590 0.94942 0.88775 0.97186 0.95347 1.21704 1.02053 1.00383 0.94303 1.21653 0.95698 1.00804 0.95830 1.18997 0.95414 0.94410 0.92140 1.21687 0.94519 1.45985 0.95852 0.92321 1.25970 1.01139 0.94776 0.97919 1.70092 1.31756 1.47562 1.07778 0.85469 0.79551 0.78064 0.78107 1.19770 1.20733 1.18801 1.21173 1.00027 0.95897 0.97592 1.21154 1.00360 0.94412 0.98634 0.92145 0.93085 0.92646 0.91344 0.91927 0.92723 0.91889 0.89912 0.90912 0.83899 0.84760 0.88997 0.95874 0.84456 0.92334 0.91989 0.91806 0.92731 0.92223 0.99826 0.98573 0.92847 0.87594 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.51 5.93 30.60 0.18 -1.33 16 3 C -0.11 -1.61 5.20 30.60 0.16 -1.45 16 4 C -0.08 -1.27 5.35 29.85 0.16 -1.11 16 5 C -0.09 -1.93 5.13 -19.87 -0.10 -2.03 16 6 C -0.12 -2.67 9.70 22.27 0.22 -2.46 16 7 C -0.10 -2.51 9.70 22.27 0.22 -2.30 16 8 C -0.10 -2.76 5.39 -19.86 -0.11 -2.87 16 9 C 0.10 3.04 5.61 85.56 0.48 3.52 16 10 N -0.68 -23.87 6.30 -495.59 -3.12 -26.99 16 11 C 0.08 2.97 2.65 44.92 0.12 3.09 16 12 H 0.03 1.05 7.80 -2.39 -0.02 1.03 16 13 C -0.13 -3.50 9.41 71.98 0.68 -2.82 16 14 C -0.10 -4.30 4.75 30.60 0.15 -4.15 16 15 C 0.03 1.47 4.80 29.85 0.14 1.61 16 16 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 19 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 20 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 C -0.13 -3.87 9.70 22.27 0.22 -3.65 16 25 C -0.13 -3.33 9.70 22.27 0.22 -3.11 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 34 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 37 H 0.09 2.40 7.38 -2.39 -0.02 2.38 16 38 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16 39 H 0.34 13.73 6.46 -89.70 -0.58 13.15 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.49 7.45 -2.39 -0.02 1.48 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 45 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 46 H 0.00 -0.22 6.43 -2.39 -0.02 -0.24 16 47 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.11 3.41 8.06 -2.91 -0.02 3.39 16 49 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -64.32 393.62 3.61 -60.70 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.29 Total: 27.14 kcal Atomic # 6 Polarization: -54.97 SS G_CDS: 4.13 Total: -50.85 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.84 Total: -83.99 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.32 3.61 -60.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.006 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds