Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47525 * 2 1 4 4 C 1.50697 * 109.47222 * 120.00702 * 2 1 3 5 5 C 1.38230 * 120.00365 * 119.99400 * 4 2 1 6 6 C 1.38235 * 120.00326 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46811 * 340.00330 * 8 7 6 10 10 C 1.52997 * 109.46856 * 100.00429 * 8 7 6 11 11 N 1.46894 * 109.47120 * 220.00289 * 8 7 6 12 12 C 1.46900 * 110.99842 * 155.00065 * 11 8 7 13 13 H 1.08998 * 109.47279 * 34.99801 * 12 11 8 14 14 C 1.52997 * 109.47364 * 274.99677 * 12 11 8 15 15 C 1.53008 * 109.47104 * 154.99839 * 12 11 8 16 16 C 1.52996 * 109.47289 * 294.99802 * 15 12 11 17 17 C 1.50694 * 109.47464 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99780 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00287 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00201 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00190 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46777 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46793 * 120.00008 * 21 19 17 24 24 H 1.48493 * 109.47386 * 240.00136 * 21 19 17 25 25 C 1.38239 * 120.00062 * 0.02871 * 7 6 5 26 26 C 1.38234 * 119.99750 * 300.02134 * 4 2 1 27 27 H 1.09001 * 109.46653 * 299.99764 * 1 2 3 28 28 H 1.09002 * 109.46851 * 59.99255 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46653 * 240.00236 * 2 1 3 31 31 H 1.09001 * 109.46510 * 60.00142 * 3 2 1 32 32 H 1.08996 * 109.47279 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47212 * 300.00539 * 3 2 1 34 34 H 1.08000 * 120.00356 * 0.02562 * 5 4 2 35 35 H 1.08000 * 120.00616 * 179.70664 * 6 5 4 36 36 H 1.09010 * 109.46869 * 299.99963 * 10 8 7 37 37 H 1.08992 * 109.47564 * 60.00079 * 10 8 7 38 38 H 1.09001 * 109.47115 * 180.02562 * 10 8 7 39 39 H 1.00904 * 111.00189 * 278.95172 * 11 8 7 40 40 H 1.08998 * 109.47024 * 300.00280 * 14 12 11 41 41 H 1.09005 * 109.46479 * 59.99664 * 14 12 11 42 42 H 1.08994 * 109.47502 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.46874 * 54.99884 * 15 12 11 44 44 H 1.08999 * 109.46623 * 175.00193 * 15 12 11 45 45 H 1.09000 * 109.47583 * 300.00554 * 16 15 12 46 46 H 1.09009 * 109.46838 * 59.99852 * 16 15 12 47 47 H 0.96993 * 120.00099 * 180.02562 * 20 19 17 48 48 H 1.08005 * 120.00103 * 179.97438 * 25 7 6 49 49 H 1.08000 * 120.00029 * 359.97337 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8270 -1.8345 1.1034 6 6 3.2874 -2.4866 2.2320 7 6 2.9535 -2.0143 3.4876 8 6 3.4549 -2.7255 4.7181 9 1 3.7434 -3.7437 4.4570 10 6 4.6671 -1.9799 5.2796 11 7 2.3908 -2.7624 5.7301 12 6 2.5791 -3.8912 6.6511 13 1 3.6446 -4.0535 6.8137 14 6 1.9576 -5.1518 6.0467 15 6 1.9012 -3.5783 7.9866 16 6 2.6046 -2.3928 8.6503 17 6 1.9365 -2.0842 9.9653 18 1 1.0946 -2.6750 10.2950 19 6 2.4006 -1.0485 10.7481 20 7 3.4261 -0.3294 10.3470 21 14 1.5728 -0.6665 12.3786 22 1 0.4514 -1.6149 12.5986 23 1 2.5603 -0.8043 13.4792 24 1 1.0492 0.7228 12.3545 25 6 2.1588 -0.8904 3.6145 26 6 1.6981 -0.2386 2.4859 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 3.0882 -2.2033 0.1225 35 1 3.9043 -3.3675 2.1330 36 1 5.4567 -1.9525 4.5286 37 1 4.3786 -0.9618 5.5407 38 1 5.0300 -2.4945 6.1693 39 1 2.3402 -1.8894 6.2336 40 1 0.8921 -4.9895 5.8840 41 1 2.4406 -5.3746 5.0952 42 1 2.0977 -5.9895 6.7298 43 1 0.8544 -3.3290 7.8130 44 1 1.9639 -4.4495 8.6387 45 1 3.6514 -2.6420 8.8238 46 1 2.5419 -1.5216 7.9981 47 1 3.7528 0.3990 10.8978 48 1 1.8976 -0.5216 4.5955 49 1 1.0772 0.6395 2.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = -15.449570 kcal Electronic energy + Delta-G solvation = -23018.954398 eV Core-core repulsion = 19944.106161 eV Total energy + Delta-G solvation = -3074.848237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73960 -37.67311 -35.56450 -33.58011 -32.40021 -30.77844 -29.63950 -28.87261 -27.64733 -27.29692 -25.11248 -23.76032 -22.77596 -21.58041 -20.72867 -19.74389 -19.48985 -16.67518 -16.21824 -15.76374 -15.18810 -14.93697 -14.50567 -14.38316 -14.01466 -13.77969 -13.62881 -13.28831 -12.97263 -12.90213 -12.80084 -12.49326 -12.47271 -12.38344 -11.94330 -11.70261 -11.58890 -11.36432 -11.27924 -11.21857 -11.12373 -10.94538 -10.88662 -10.65319 -10.52518 -10.43034 -10.19587 -9.75920 -9.26796 -9.02159 -8.74288 -8.37715 -8.35669 -7.92577 -6.01424 -4.03216 1.49542 1.58489 3.30309 3.38059 3.42409 3.88696 4.45436 4.56069 4.59097 4.71003 5.03982 5.06270 5.12980 5.14689 5.31366 5.34053 5.38655 5.45563 5.50639 5.56947 5.58471 5.65626 5.67149 5.76355 5.80647 5.81337 5.85422 5.97076 6.07059 6.07474 6.09925 6.18195 6.21706 6.26275 6.38450 6.44271 6.53323 6.54584 6.62853 6.73932 6.86148 6.93254 7.09221 7.17052 7.55701 7.62234 7.80386 7.91894 7.99303 8.42243 9.03697 9.61107 11.09682 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.003282 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.980991 B = 8530.307971 C = 9289.496693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.088 4.088 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.060 4.060 8 C 0.121 3.879 9 H 0.079 0.921 10 C -0.176 4.176 11 N -0.679 5.679 12 C 0.083 3.917 13 H 0.039 0.961 14 C -0.136 4.136 15 C -0.115 4.115 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.093 4.093 26 C -0.115 4.115 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.352 0.648 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.259 0.741 48 H 0.123 0.877 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 -1.618 -20.729 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.088 4.088 5 C -0.139 4.139 6 C -0.136 4.136 7 C -0.060 4.060 8 C 0.011 3.989 9 H 0.098 0.902 10 C -0.235 4.235 11 N -0.313 5.313 12 C -0.027 4.027 13 H 0.057 0.943 14 C -0.194 4.194 15 C -0.153 4.153 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.111 4.111 26 C -0.133 4.133 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.175 0.825 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.141 0.859 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.263 -1.812 -21.053 21.169 hybrid contribution 0.433 0.609 1.516 1.690 sum -0.830 -1.203 -19.537 19.592 Atomic orbital electron populations 1.21857 0.94496 1.01989 1.01781 1.20085 0.95849 0.95911 0.95454 1.21856 1.01182 0.95287 1.01799 1.19753 0.98506 0.96075 0.94464 1.20897 0.98960 0.96002 0.98087 1.20926 1.00704 0.99995 0.92001 1.19843 0.96920 0.95290 0.93984 1.20451 0.89974 0.98087 0.90425 0.90250 1.22470 0.98337 1.01547 1.01152 1.60721 1.45134 1.07990 1.17441 1.21597 0.97940 0.90587 0.92533 0.94335 1.21798 1.01374 0.96713 0.99493 1.21829 0.99897 1.00490 0.93038 1.19118 0.95434 0.91961 0.95022 1.21279 1.15284 1.14906 1.04161 0.92662 1.25019 0.95071 0.96221 0.98128 1.69965 1.25099 1.20407 1.37994 0.86562 0.79495 0.78177 0.83932 1.19739 1.21088 1.21020 1.20988 0.96559 0.94929 0.98638 1.20933 1.00452 1.00017 0.91925 0.92336 0.92685 0.92565 0.90882 0.92355 0.92615 0.92660 0.86731 0.86603 0.92636 0.91941 0.91864 0.82519 0.92413 0.93872 0.93102 0.92500 0.92785 0.96989 0.96697 0.93120 0.85864 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.01 37.16 0.33 -0.89 16 2 C -0.05 -0.50 3.09 -91.77 -0.28 -0.78 16 3 C -0.14 -1.21 9.01 37.16 0.33 -0.87 16 4 C -0.09 -1.00 4.78 -104.63 -0.50 -1.50 16 5 C -0.12 -1.39 9.67 -39.59 -0.38 -1.77 16 6 C -0.12 -1.46 9.67 -39.58 -0.38 -1.84 16 7 C -0.06 -0.83 4.96 -104.62 -0.52 -1.35 16 8 C 0.12 1.76 2.60 -68.87 -0.18 1.58 16 9 H 0.08 1.10 6.97 -51.93 -0.36 0.74 16 10 C -0.18 -2.60 9.12 37.16 0.34 -2.27 16 11 N -0.68 -11.25 5.51 -100.95 -0.56 -11.81 16 12 C 0.08 1.42 2.46 -67.71 -0.17 1.26 16 13 H 0.04 0.68 7.11 -51.93 -0.37 0.31 16 14 C -0.14 -2.02 9.40 37.16 0.35 -1.67 16 15 C -0.11 -2.34 4.74 -26.73 -0.13 -2.47 16 16 C 0.02 0.55 4.80 -27.89 -0.13 0.41 16 17 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.09 -1.31 9.32 -39.58 -0.37 -1.68 16 26 C -0.12 -1.44 8.71 -39.58 -0.34 -1.79 16 27 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.60 7.88 -51.93 -0.41 0.20 16 31 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.11 1.07 7.95 -52.49 -0.42 0.65 16 35 H 0.12 1.24 8.04 -52.49 -0.42 0.82 16 36 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.06 1.01 7.43 -51.93 -0.39 0.62 16 39 H 0.35 6.48 5.56 -39.29 -0.22 6.26 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.01 0.39 6.43 -51.92 -0.33 0.05 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.12 1.82 7.25 -52.48 -0.38 1.44 16 49 H 0.12 1.31 7.10 -52.49 -0.37 0.93 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -29.15 385.08 -10.49 -39.65 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -9.01 Total: 4.54 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.44 Total: -28.98 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.18 Total: -37.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.15 -10.49 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.198 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds