Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47525 * 2 1 4 4 C 1.50697 * 109.47222 * 120.00702 * 2 1 3 5 5 C 1.38230 * 120.00365 * 119.99400 * 4 2 1 6 6 C 1.38235 * 120.00326 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46811 * 340.00330 * 8 7 6 10 10 C 1.52997 * 109.46856 * 100.00429 * 8 7 6 11 11 N 1.46894 * 109.47120 * 220.00289 * 8 7 6 12 12 C 1.46900 * 110.99842 * 155.00065 * 11 8 7 13 13 H 1.08998 * 109.47279 * 34.99801 * 12 11 8 14 14 C 1.52997 * 109.47364 * 274.99677 * 12 11 8 15 15 C 1.53008 * 109.47104 * 154.99839 * 12 11 8 16 16 C 1.52996 * 109.47289 * 294.99802 * 15 12 11 17 17 C 1.50694 * 109.47464 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99780 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00287 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00201 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00190 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46777 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46793 * 120.00008 * 21 19 17 24 24 H 1.48493 * 109.47386 * 240.00136 * 21 19 17 25 25 C 1.38239 * 120.00062 * 0.02871 * 7 6 5 26 26 C 1.38234 * 119.99750 * 300.02134 * 4 2 1 27 27 H 1.09001 * 109.46653 * 299.99764 * 1 2 3 28 28 H 1.09002 * 109.46851 * 59.99255 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46653 * 240.00236 * 2 1 3 31 31 H 1.09001 * 109.46510 * 60.00142 * 3 2 1 32 32 H 1.08996 * 109.47279 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47212 * 300.00539 * 3 2 1 34 34 H 1.08000 * 120.00356 * 0.02562 * 5 4 2 35 35 H 1.08000 * 120.00616 * 179.70664 * 6 5 4 36 36 H 1.09010 * 109.46869 * 299.99963 * 10 8 7 37 37 H 1.08992 * 109.47564 * 60.00079 * 10 8 7 38 38 H 1.09001 * 109.47115 * 180.02562 * 10 8 7 39 39 H 1.00904 * 111.00189 * 278.95172 * 11 8 7 40 40 H 1.08998 * 109.47024 * 300.00280 * 14 12 11 41 41 H 1.09005 * 109.46479 * 59.99664 * 14 12 11 42 42 H 1.08994 * 109.47502 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.46874 * 54.99884 * 15 12 11 44 44 H 1.08999 * 109.46623 * 175.00193 * 15 12 11 45 45 H 1.09000 * 109.47583 * 300.00554 * 16 15 12 46 46 H 1.09009 * 109.46838 * 59.99852 * 16 15 12 47 47 H 0.96993 * 120.00099 * 180.02562 * 20 19 17 48 48 H 1.08005 * 120.00103 * 179.97438 * 25 7 6 49 49 H 1.08000 * 120.00029 * 359.97337 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8270 -1.8345 1.1034 6 6 3.2874 -2.4866 2.2320 7 6 2.9535 -2.0143 3.4876 8 6 3.4549 -2.7255 4.7181 9 1 3.7434 -3.7437 4.4570 10 6 4.6671 -1.9799 5.2796 11 7 2.3908 -2.7624 5.7301 12 6 2.5791 -3.8912 6.6511 13 1 3.6446 -4.0535 6.8137 14 6 1.9576 -5.1518 6.0467 15 6 1.9012 -3.5783 7.9866 16 6 2.6046 -2.3928 8.6503 17 6 1.9365 -2.0842 9.9653 18 1 1.0946 -2.6750 10.2950 19 6 2.4006 -1.0485 10.7481 20 7 3.4261 -0.3294 10.3470 21 14 1.5728 -0.6665 12.3786 22 1 0.4514 -1.6149 12.5986 23 1 2.5603 -0.8043 13.4792 24 1 1.0492 0.7228 12.3545 25 6 2.1588 -0.8904 3.6145 26 6 1.6981 -0.2386 2.4859 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 3.0882 -2.2033 0.1225 35 1 3.9043 -3.3675 2.1330 36 1 5.4567 -1.9525 4.5286 37 1 4.3786 -0.9618 5.5407 38 1 5.0300 -2.4945 6.1693 39 1 2.3402 -1.8894 6.2336 40 1 0.8921 -4.9895 5.8840 41 1 2.4406 -5.3746 5.0952 42 1 2.0977 -5.9895 6.7298 43 1 0.8544 -3.3290 7.8130 44 1 1.9639 -4.4495 8.6387 45 1 3.6514 -2.6420 8.8238 46 1 2.5419 -1.5216 7.9981 47 1 3.7528 0.3990 10.8978 48 1 1.8976 -0.5216 4.5955 49 1 1.0772 0.6395 2.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = -28.715928 kcal Electronic energy + Delta-G solvation = -23019.529670 eV Core-core repulsion = 19944.106161 eV Total energy + Delta-G solvation = -3075.423509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73002 -38.93362 -36.63001 -35.28034 -33.97609 -31.74687 -31.38097 -29.95937 -28.88015 -27.94981 -27.03047 -24.81048 -23.76181 -23.30704 -21.86268 -20.96261 -20.65183 -18.54804 -17.51230 -16.97869 -16.54541 -16.29344 -15.93651 -15.57669 -15.03061 -14.70412 -14.52522 -14.48746 -14.36518 -14.27211 -14.10003 -13.95090 -13.66554 -13.26512 -13.16175 -13.06341 -12.94631 -12.85349 -12.61786 -12.52047 -12.32946 -12.14348 -12.06305 -11.93156 -11.84131 -11.59940 -11.42917 -11.41397 -11.26600 -10.93398 -10.55404 -9.71848 -9.40453 -9.20927 -8.20719 -6.30941 0.52144 0.60847 1.38048 1.38748 1.51736 2.39897 2.89102 3.12284 3.32214 3.78327 3.87621 3.98639 4.04338 4.19616 4.21982 4.33434 4.35202 4.37442 4.40058 4.47100 4.58906 4.64690 4.67365 4.76689 4.80599 4.83236 4.85615 5.00902 5.01718 5.02241 5.06798 5.08932 5.12678 5.16263 5.23341 5.26134 5.29980 5.39490 5.41448 5.44998 5.53486 5.64685 5.69912 5.82009 5.83634 5.84572 6.20158 6.25452 6.31837 6.44377 6.85612 7.38062 8.90522 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.003282 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.980991 B = 8530.307971 C = 9289.496693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.075 4.075 8 C 0.126 3.874 9 H 0.092 0.908 10 C -0.169 4.169 11 N -0.680 5.680 12 C 0.088 3.912 13 H 0.032 0.968 14 C -0.127 4.127 15 C -0.102 4.102 16 C 0.031 3.969 17 C -0.542 4.542 18 H 0.056 0.944 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.961 3.039 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.113 4.113 26 C -0.123 4.123 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.338 0.662 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.057 0.943 45 H -0.016 1.016 46 H -0.002 1.002 47 H 0.262 0.738 48 H 0.103 0.897 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -2.409 -22.413 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.140 4.140 6 C -0.138 4.138 7 C -0.076 4.076 8 C 0.016 3.984 9 H 0.110 0.890 10 C -0.228 4.228 11 N -0.312 5.312 12 C -0.022 4.022 13 H 0.050 0.950 14 C -0.185 4.185 15 C -0.140 4.140 16 C -0.006 4.006 17 C -0.580 4.580 18 H 0.075 0.925 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.786 3.214 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.132 4.132 26 C -0.141 4.141 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.158 0.842 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.003 0.997 46 H 0.016 0.984 47 H 0.071 0.929 48 H 0.121 0.879 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.831 -2.621 -22.750 22.973 hybrid contribution 0.627 0.894 1.984 2.265 sum -1.203 -1.727 -20.766 20.872 Atomic orbital electron populations 1.21849 0.94087 1.01833 1.02248 1.20147 0.96139 0.96113 0.94741 1.21847 1.00938 0.94970 1.02262 1.20077 0.97764 0.96028 0.94806 1.21249 0.98147 0.95569 0.99029 1.21166 1.00618 1.00568 0.91445 1.19800 0.97867 0.95557 0.94326 1.20470 0.89059 0.98760 0.90138 0.88988 1.22394 0.99261 1.00169 1.01006 1.60811 1.46220 1.06977 1.17238 1.21531 0.97361 0.92024 0.91277 0.94978 1.21712 1.00994 0.95398 1.00364 1.21646 0.99256 0.98435 0.94658 1.18965 0.94091 0.93250 0.94323 1.21715 1.15560 1.15212 1.05470 0.92538 1.25926 0.95662 0.96018 1.02023 1.70092 1.26451 1.20926 1.39538 0.85456 0.78640 0.78163 0.79138 1.18750 1.20438 1.20396 1.20962 0.97888 0.95896 0.98415 1.21053 1.00669 1.00278 0.92137 0.93148 0.90996 0.93022 0.89360 0.93147 0.92979 0.90996 0.84036 0.84657 0.90600 0.93899 0.93582 0.84203 0.92693 0.92229 0.91861 0.92916 0.92476 0.99721 0.98417 0.92896 0.87866 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.01 71.98 0.65 -1.51 16 2 C -0.05 -0.84 3.09 -11.54 -0.04 -0.88 16 3 C -0.14 -2.13 9.01 71.98 0.65 -1.48 16 4 C -0.09 -1.84 4.78 -19.87 -0.09 -1.94 16 5 C -0.12 -2.49 9.67 22.27 0.22 -2.28 16 6 C -0.12 -2.73 9.67 22.27 0.22 -2.52 16 7 C -0.07 -2.06 4.96 -19.86 -0.10 -2.16 16 8 C 0.13 3.66 2.60 44.17 0.11 3.77 16 9 H 0.09 2.44 6.97 -2.39 -0.02 2.42 16 10 C -0.17 -5.18 9.12 71.98 0.66 -4.53 16 11 N -0.68 -23.16 5.51 -473.31 -2.61 -25.76 16 12 C 0.09 3.02 2.46 44.92 0.11 3.13 16 13 H 0.03 1.15 7.11 -2.39 -0.02 1.14 16 14 C -0.13 -3.56 9.40 71.98 0.68 -2.89 16 15 C -0.10 -4.26 4.74 30.60 0.15 -4.11 16 16 C 0.03 1.62 4.80 29.84 0.14 1.76 16 17 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 19 C 0.00 0.09 5.46 84.65 0.46 0.55 16 20 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 21 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 C -0.11 -3.30 9.32 22.27 0.21 -3.10 16 26 C -0.12 -3.09 8.71 22.27 0.19 -2.90 16 27 H 0.05 0.84 7.39 -2.39 -0.02 0.82 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.17 7.88 -2.39 -0.02 1.15 16 31 H 0.05 0.82 7.39 -2.39 -0.02 0.81 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.14 2.11 7.95 -2.91 -0.02 2.08 16 35 H 0.14 2.51 8.04 -2.91 -0.02 2.48 16 36 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 38 H 0.05 1.53 7.43 -2.39 -0.02 1.52 16 39 H 0.34 13.24 5.56 -89.69 -0.50 12.74 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.49 7.43 -2.38 -0.02 1.47 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H 0.00 -0.13 6.43 -2.38 -0.02 -0.15 16 47 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 48 H 0.10 3.33 7.25 -2.91 -0.02 3.31 16 49 H 0.12 2.80 7.10 -2.91 -0.02 2.78 16 Total: -1.00 -63.38 385.08 4.53 -58.85 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.39 Total: 28.36 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 4.44 Total: -51.94 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.32 Total: -82.06 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.38 4.53 -58.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.130 kcal (2) G-P(sol) polarization free energy of solvation -63.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds