Wall clock time and date at job start Tue Mar 31 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 C 1.50691 * 109.47607 * 120.00376 * 2 1 3 5 5 C 1.38231 * 120.00474 * 119.99687 * 4 2 1 6 6 C 1.38232 * 120.00524 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99865 * 359.96054 * 6 5 4 8 8 C 1.50705 * 120.00263 * 179.97438 * 7 6 5 9 9 H 1.09009 * 109.46870 * 340.00182 * 8 7 6 10 10 C 1.53001 * 109.46914 * 99.99799 * 8 7 6 11 11 N 1.46897 * 109.47469 * 220.00378 * 8 7 6 12 12 C 1.46892 * 111.00275 * 86.88842 * 11 8 7 13 13 H 1.09004 * 109.47298 * 321.97291 * 12 11 8 14 14 C 1.53006 * 109.47165 * 81.97445 * 12 11 8 15 15 C 1.53001 * 109.47332 * 201.97520 * 12 11 8 16 16 C 1.52997 * 109.47123 * 64.99759 * 15 12 11 17 17 C 1.50700 * 109.46952 * 180.02562 * 16 15 12 18 18 H 1.07999 * 119.99905 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00115 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00290 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99863 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47418 * 90.00435 * 21 19 17 23 23 H 1.48507 * 109.47146 * 210.00638 * 21 19 17 24 24 H 1.48508 * 109.47214 * 330.00229 * 21 19 17 25 25 C 1.38234 * 119.99819 * 0.27561 * 7 6 5 26 26 C 1.38232 * 120.00029 * 359.51003 * 25 7 6 27 27 H 1.09001 * 109.47120 * 299.99427 * 1 2 3 28 28 H 1.08996 * 109.47362 * 59.99884 * 1 2 3 29 29 H 1.09006 * 109.46642 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47120 * 240.00573 * 2 1 3 31 31 H 1.08996 * 109.47143 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47061 * 300.00512 * 3 2 1 33 33 H 1.09001 * 109.46674 * 60.00300 * 3 2 1 34 34 H 1.08003 * 119.99727 * 359.97438 * 5 4 2 35 35 H 1.08003 * 120.00042 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46906 * 64.94160 * 10 8 7 37 37 H 1.09001 * 109.47013 * 184.94088 * 10 8 7 38 38 H 1.08999 * 109.47134 * 304.93796 * 10 8 7 39 39 H 1.00893 * 110.99972 * 210.84920 * 11 8 7 40 40 H 1.08991 * 109.47233 * 174.94733 * 14 12 11 41 41 H 1.09004 * 109.46525 * 294.94587 * 14 12 11 42 42 H 1.09001 * 109.46541 * 54.94267 * 14 12 11 43 43 H 1.08998 * 109.47372 * 185.00540 * 15 12 11 44 44 H 1.09003 * 109.46728 * 304.99829 * 15 12 11 45 45 H 1.08991 * 109.47625 * 300.00231 * 16 15 12 46 46 H 1.09000 * 109.47183 * 60.00914 * 16 15 12 47 47 H 0.97001 * 119.99924 * 179.97438 * 20 19 17 48 48 H 1.08004 * 119.99830 * 179.73072 * 25 7 6 49 49 H 1.08003 * 119.99895 * 180.25583 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.8271 -1.8343 1.1035 6 6 3.2884 -2.4857 2.2320 7 6 2.9557 -2.0127 3.4876 8 6 3.4581 -2.7231 4.7181 9 1 3.7464 -3.7415 4.4573 10 6 4.6710 -1.9773 5.2780 11 7 2.3950 -2.7594 5.7311 12 6 1.5257 -3.9280 5.5403 13 1 1.3801 -4.1024 4.4742 14 6 2.1785 -5.1582 6.1740 15 6 0.1716 -3.6703 6.2044 16 6 -0.5363 -2.5181 5.4888 17 6 -1.8697 -2.2638 6.1434 18 1 -2.1809 -2.8638 6.9858 19 6 -2.6925 -1.2653 5.6668 20 7 -3.8564 -1.0438 6.2376 21 14 -2.1539 -0.2272 4.2102 22 1 -2.6136 -0.8653 2.9505 23 1 -2.7472 1.1295 4.3229 24 1 -0.6727 -0.1204 4.1990 25 6 2.1570 -0.8916 3.6145 26 6 1.6993 -0.2377 2.4859 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0876 -2.2035 0.1225 35 1 3.9090 -3.3641 2.1328 36 1 4.3637 -0.9889 5.6198 37 1 5.0877 -2.5378 6.1148 38 1 5.4257 -1.8738 4.4983 39 1 2.7824 -2.7451 6.6625 40 1 1.4950 -6.0048 6.1118 41 1 3.0998 -5.3951 5.6417 42 1 2.4060 -4.9507 7.2196 43 1 -0.4415 -4.5692 6.1405 44 1 0.3245 -3.4086 7.2515 45 1 0.0767 -1.6191 5.5528 46 1 -0.6893 -2.7798 4.4418 47 1 -4.4350 -0.3410 5.9025 48 1 1.8934 -0.5246 4.5955 49 1 1.0787 0.6406 2.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:53 Heat of formation + Delta-G solvation = -26.070768 kcal Electronic energy + Delta-G solvation = -24071.948781 eV Core-core repulsion = 20996.639974 eV Total energy + Delta-G solvation = -3075.308806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72386 -38.81927 -36.55397 -35.31132 -34.06846 -31.90856 -31.66054 -29.91978 -28.77409 -28.03544 -27.07783 -24.73476 -23.69844 -22.93243 -21.73945 -21.34168 -20.62811 -18.83399 -17.44361 -16.99300 -16.34105 -16.05493 -15.90783 -15.76769 -15.22918 -14.75728 -14.65145 -14.58491 -14.43052 -14.14057 -14.00720 -13.94946 -13.79066 -13.39799 -13.28317 -13.17619 -12.94175 -12.88841 -12.54345 -12.32647 -12.20267 -12.09225 -11.99274 -11.93883 -11.65329 -11.51298 -11.46442 -11.44324 -11.30267 -11.05854 -10.73472 -9.68534 -9.31835 -9.13859 -8.28325 -6.29227 0.52373 0.63886 1.31973 1.32771 1.49888 2.36603 2.92096 3.08239 3.31339 3.76796 3.88582 3.97691 4.07179 4.20214 4.26396 4.28598 4.31512 4.40515 4.46063 4.46349 4.54432 4.67101 4.73516 4.74082 4.75532 4.82169 4.92446 4.93849 4.96301 4.99763 5.04615 5.07745 5.10677 5.24612 5.26428 5.30445 5.31674 5.32911 5.35612 5.42399 5.61184 5.65492 5.70852 5.78676 5.83455 5.84997 6.23235 6.33621 6.35640 6.69676 6.79860 7.35075 8.88393 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.007693 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.699424 B = 3638.593261 C = 5919.242683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.089 4.089 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.085 4.085 8 C 0.127 3.873 9 H 0.063 0.937 10 C -0.141 4.141 11 N -0.685 5.685 12 C 0.096 3.904 13 H 0.060 0.940 14 C -0.170 4.170 15 C -0.086 4.086 16 C 0.011 3.989 17 C -0.525 4.525 18 H 0.029 0.971 19 C 0.005 3.995 20 N -0.955 5.955 21 Si 0.939 3.061 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.234 1.234 25 C -0.094 4.094 26 C -0.140 4.140 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.348 0.652 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.031 0.969 46 H -0.007 1.007 47 H 0.263 0.737 48 H 0.108 0.892 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.063 -1.478 -11.770 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.089 4.089 5 C -0.144 4.144 6 C -0.139 4.139 7 C -0.086 4.086 8 C 0.017 3.983 9 H 0.081 0.919 10 C -0.199 4.199 11 N -0.317 5.317 12 C -0.014 4.014 13 H 0.078 0.922 14 C -0.229 4.229 15 C -0.124 4.124 16 C -0.027 4.027 17 C -0.563 4.563 18 H 0.047 0.953 19 C -0.191 4.191 20 N -0.597 5.597 21 Si 0.764 3.236 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.157 1.157 25 C -0.112 4.112 26 C -0.158 4.158 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.168 0.832 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.011 0.989 47 H 0.072 0.928 48 H 0.126 0.874 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.524 -0.945 -12.101 23.844 hybrid contribution -0.479 -0.063 0.274 0.556 sum 20.045 -1.009 -11.827 23.295 Atomic orbital electron populations 1.21912 0.95336 1.01537 1.01902 1.20156 0.95076 0.96698 0.95202 1.21826 1.01286 0.94556 1.02058 1.20053 0.97936 0.96430 0.94458 1.21218 0.98438 0.95398 0.99384 1.21227 1.00653 1.00372 0.91597 1.20033 0.97929 0.95589 0.95032 1.20408 0.90468 0.97586 0.89805 0.91944 1.21893 0.95947 1.00589 1.01472 1.60374 1.21644 1.42960 1.06751 1.21459 0.92368 0.88666 0.98935 0.92197 1.22401 1.01005 0.98241 1.01236 1.21344 0.94557 0.97564 0.98909 1.19274 0.93083 0.96388 0.93915 1.21681 1.02940 1.16397 1.15286 0.95261 1.25926 0.94706 0.98620 0.99843 1.70079 1.11755 1.33943 1.43889 0.85819 0.80991 0.77536 0.79299 1.20228 1.21500 1.15730 1.20984 0.96479 0.95719 0.98028 1.21084 1.00898 1.00639 0.93168 0.94487 0.90388 0.93550 0.88704 0.92077 0.90902 0.93723 0.84052 0.84240 0.92766 0.90818 0.91075 0.83162 0.92247 0.91509 0.91877 0.93823 0.93415 0.95039 0.98882 0.92838 0.87390 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.01 71.98 0.65 -3.04 16 2 C -0.05 -1.16 3.09 -11.54 -0.04 -1.20 16 3 C -0.14 -2.71 9.01 71.98 0.65 -2.06 16 4 C -0.09 -2.38 4.78 -19.87 -0.09 -2.48 16 5 C -0.13 -2.99 9.67 22.27 0.22 -2.78 16 6 C -0.12 -2.87 9.67 22.27 0.22 -2.65 16 7 C -0.09 -2.35 4.70 -19.86 -0.09 -2.44 16 8 C 0.13 2.94 2.63 44.17 0.12 3.06 16 9 H 0.06 1.29 6.80 -2.38 -0.02 1.28 16 10 C -0.14 -2.62 9.13 71.98 0.66 -1.96 16 11 N -0.68 -19.06 4.74 -473.30 -2.24 -21.30 16 12 C 0.10 2.90 2.41 44.92 0.11 3.01 16 13 H 0.06 1.98 7.74 -2.39 -0.02 1.96 16 14 C -0.17 -3.91 9.15 71.98 0.66 -3.25 16 15 C -0.09 -3.44 4.83 30.59 0.15 -3.29 16 16 C 0.01 0.54 3.93 29.85 0.12 0.65 16 17 C -0.52 -31.96 9.66 25.60 0.25 -31.71 16 18 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 19 C 0.00 0.30 5.47 84.65 0.46 0.77 16 20 N -0.95 -62.86 13.96 21.45 0.30 -62.56 16 21 Si 0.94 47.71 27.47 68.60 1.88 49.59 16 22 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.23 -11.13 6.54 99.48 0.65 -10.48 16 25 C -0.09 -3.10 9.33 22.27 0.21 -2.90 16 26 C -0.14 -4.50 8.71 22.27 0.19 -4.31 16 27 H 0.04 1.05 7.39 -2.39 -0.02 1.03 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.09 1.68 7.88 -2.39 -0.02 1.67 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.04 0.97 7.39 -2.39 -0.02 0.96 16 34 H 0.14 2.51 7.95 -2.91 -0.02 2.49 16 35 H 0.14 2.53 8.04 -2.91 -0.02 2.51 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.35 8.53 8.07 -89.70 -0.72 7.81 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.27 7.31 -2.38 -0.02 1.25 16 42 H 0.06 1.35 8.06 -2.39 -0.02 1.33 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.03 1.57 6.54 -2.39 -0.02 1.55 16 46 H -0.01 -0.37 7.57 -2.39 -0.02 -0.39 16 47 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 48 H 0.11 4.00 7.43 -2.91 -0.02 3.97 16 49 H 0.10 3.42 7.10 -2.91 -0.02 3.40 16 Total: -1.00 -71.04 385.07 4.47 -66.58 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.11 Total: 24.27 kcal Atomic # 6 Polarization: -61.00 SS G_CDS: 4.42 Total: -56.58 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.94 Total: -83.86 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.88 Total: 49.59 kcal Total: -71.04 4.47 -66.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.506 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds