Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 H 1.09002 * 109.46997 * 305.57050 * 3 2 1 5 5 N 1.46895 * 109.46853 * 65.56788 * 3 2 1 6 6 C 1.46904 * 111.00143 * 207.85629 * 5 3 2 7 7 H 1.08998 * 109.46560 * 319.71704 * 6 5 3 8 8 C 1.52991 * 109.47258 * 79.71681 * 6 5 3 9 9 C 1.53002 * 109.46889 * 199.71859 * 6 5 3 10 10 C 1.53003 * 109.47184 * 64.99845 * 9 6 5 11 11 C 1.50695 * 109.47047 * 179.97438 * 10 9 6 12 12 H 1.08004 * 120.00125 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00100 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00029 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46987 * 90.00477 * 15 13 11 17 17 H 1.48500 * 109.47087 * 210.00039 * 15 13 11 18 18 H 1.48489 * 109.47181 * 330.00048 * 15 13 11 19 19 C 1.50698 * 109.47033 * 185.56605 * 3 2 1 20 20 C 1.38255 * 119.99990 * 264.97969 * 19 3 2 21 21 C 1.38212 * 119.99985 * 180.02562 * 20 19 3 22 22 C 1.38260 * 119.99993 * 359.97438 * 21 20 19 23 23 C 1.50695 * 120.00008 * 179.97438 * 22 21 20 24 24 C 1.38214 * 119.99811 * 359.81488 * 22 21 20 25 25 C 1.38213 * 119.99774 * 85.00554 * 19 3 2 26 26 C 1.50697 * 120.00348 * 359.97438 * 25 19 3 27 27 H 1.08992 * 109.46877 * 174.12891 * 1 2 3 28 28 H 1.09003 * 109.46589 * 294.12556 * 1 2 3 29 29 H 1.08995 * 109.47370 * 54.12203 * 1 2 3 30 30 H 1.09006 * 109.46373 * 240.00520 * 2 1 3 31 31 H 1.08999 * 109.47240 * 120.00457 * 2 1 3 32 32 H 1.00903 * 111.00236 * 331.80808 * 5 3 2 33 33 H 1.09004 * 109.47457 * 174.61696 * 8 6 5 34 34 H 1.09003 * 109.47556 * 294.62204 * 8 6 5 35 35 H 1.08996 * 109.47430 * 54.62148 * 8 6 5 36 36 H 1.09005 * 109.46741 * 184.99514 * 9 6 5 37 37 H 1.08988 * 109.47418 * 304.99582 * 9 6 5 38 38 H 1.08995 * 109.46946 * 299.99561 * 10 9 6 39 39 H 1.09005 * 109.46910 * 59.99678 * 10 9 6 40 40 H 0.96997 * 120.00316 * 179.97438 * 14 13 11 41 41 H 1.07999 * 119.99898 * 359.97438 * 20 19 3 42 42 H 1.08002 * 120.00336 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.47204 * 89.99993 * 23 22 21 44 44 H 1.09004 * 109.47321 * 210.00107 * 23 22 21 45 45 H 1.09002 * 109.47371 * 329.99992 * 23 22 21 46 46 H 1.08004 * 120.00273 * 180.23013 * 24 22 21 47 47 H 1.08996 * 109.47012 * 90.00000 * 26 25 19 48 48 H 1.09003 * 109.47022 * 330.00079 * 26 25 19 49 49 H 1.08993 * 109.47655 * 210.00389 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5976 1.9843 -0.8359 5 7 1.6632 2.0950 1.2609 6 6 1.5168 3.5455 1.0799 7 1 2.3082 3.9117 0.4260 8 6 0.1552 3.8460 0.4503 9 6 1.6152 4.2416 2.4389 10 6 3.0201 4.0449 3.0121 11 6 3.1171 4.7310 4.3503 12 1 2.2623 5.2553 4.7516 13 6 4.2974 4.6904 5.0618 14 7 4.3822 5.2896 6.2295 15 14 5.7759 3.7843 4.3674 16 1 6.5902 4.7191 3.5499 17 1 6.6009 3.2550 5.4830 18 1 5.3121 2.6585 3.5174 19 6 3.5408 1.4447 -0.1378 20 6 4.3384 1.5118 0.9895 21 6 5.7147 1.5143 0.8631 22 6 6.2939 1.4492 -0.3907 23 6 7.7945 1.4525 -0.5286 24 6 5.4965 1.3777 -1.5174 25 6 4.1197 1.3801 -1.3912 26 6 3.2503 1.3069 -2.6199 27 1 -0.3633 -1.0222 -0.1051 28 1 -0.3632 0.4201 0.9380 29 1 -0.3634 0.6022 -0.8326 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.8196 1.6909 1.6392 33 1 0.0065 4.9248 0.4038 34 1 0.1209 3.4307 -0.5569 35 1 -0.6321 3.3966 1.0555 36 1 1.4184 5.3067 2.3166 37 1 0.8812 3.8125 3.1208 38 1 3.2168 2.9799 3.1344 39 1 3.7541 4.4741 2.3300 40 1 5.2124 5.2607 6.7303 41 1 3.8859 1.5631 1.9688 42 1 6.3378 1.5672 1.7436 43 1 8.1638 0.4273 -0.5050 44 1 8.0714 1.9168 -1.4751 45 1 8.2338 2.0159 0.2947 46 1 5.9489 1.3230 -2.4966 47 1 3.0337 2.3153 -2.9723 48 1 2.3173 0.7993 -2.3751 49 1 3.7710 0.7531 -3.4010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = -8.492580 kcal Electronic energy + Delta-G solvation = -24320.676238 eV Core-core repulsion = 21246.129679 eV Total energy + Delta-G solvation = -3074.546559 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84050 -37.59648 -34.90825 -33.07977 -32.57221 -31.73378 -30.46393 -28.98357 -27.44367 -26.80383 -25.27486 -24.36188 -21.97194 -21.25619 -20.88302 -19.82076 -19.51135 -16.60125 -16.26628 -15.92502 -15.05753 -14.71209 -14.44128 -14.15497 -14.02773 -13.82602 -13.52585 -13.17624 -13.07997 -12.94190 -12.82944 -12.56746 -12.52425 -12.37020 -12.25151 -11.92405 -11.80975 -11.63376 -11.50628 -11.26462 -11.02219 -10.90659 -10.72449 -10.66432 -10.50612 -10.29676 -9.77598 -9.58509 -9.42642 -8.96050 -8.41961 -8.38996 -8.15294 -7.98377 -5.92063 -3.87961 1.59121 1.74399 3.40737 3.46970 3.53239 3.99051 4.38226 4.57563 4.84658 4.91821 4.97126 5.04520 5.13226 5.23388 5.31702 5.34892 5.42339 5.43789 5.44555 5.48506 5.57287 5.60369 5.64926 5.66448 5.74387 5.78070 5.82340 5.87395 5.93391 6.00244 6.08057 6.17641 6.21868 6.23674 6.35570 6.38628 6.46729 6.58242 6.74259 6.77786 6.95434 7.00379 7.14546 7.36291 7.45254 7.57075 7.75007 7.80008 7.97216 8.68426 9.14286 9.72206 11.21665 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.006937 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.277561 B = 4035.628771 C = 5854.159019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C 0.128 3.872 4 H 0.053 0.947 5 N -0.670 5.670 6 C 0.083 3.917 7 H 0.072 0.928 8 C -0.180 4.180 9 C -0.091 4.091 10 C -0.003 4.003 11 C -0.515 4.515 12 H 0.067 0.933 13 C 0.064 3.936 14 N -0.910 5.910 15 Si 0.874 3.126 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.253 1.253 19 C -0.082 4.082 20 C -0.071 4.071 21 C -0.131 4.131 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.131 4.131 25 C -0.087 4.087 26 C -0.114 4.114 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.340 0.660 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.032 0.968 39 H 0.002 0.998 40 H 0.260 0.740 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -11.351 -18.382 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.018 3.982 4 H 0.071 0.929 5 N -0.302 5.302 6 C -0.027 4.027 7 H 0.090 0.910 8 C -0.239 4.239 9 C -0.129 4.129 10 C -0.041 4.041 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.136 4.136 14 N -0.550 5.550 15 Si 0.701 3.299 16 H -0.207 1.207 17 H -0.219 1.219 18 H -0.177 1.177 19 C -0.083 4.083 20 C -0.089 4.089 21 C -0.149 4.149 22 C -0.091 4.091 23 C -0.169 4.169 24 C -0.149 4.149 25 C -0.088 4.088 26 C -0.171 4.171 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.162 0.838 42 H 0.134 0.866 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.131 0.869 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.247 -11.280 -18.005 21.365 hybrid contribution 0.124 -0.161 -0.643 0.674 sum -2.123 -11.441 -18.648 21.981 Atomic orbital electron populations 1.21841 0.95854 1.01698 1.01831 1.21724 0.95418 0.96056 1.02961 1.20379 0.91499 0.94186 0.92139 0.92917 1.60524 1.40475 1.03573 1.25676 1.21766 0.94894 0.87427 0.98596 0.90972 1.22529 0.99139 1.02195 1.00044 1.21453 1.00476 0.97908 0.93036 1.19485 0.91763 0.97512 0.95306 1.21277 0.98917 1.33006 1.02159 0.91509 1.25022 0.98688 0.95227 0.94686 1.69933 1.26838 1.44751 1.13508 0.86870 0.82959 0.81369 0.78686 1.20727 1.21938 1.17685 1.19676 0.95044 1.01292 0.92245 1.21368 0.92510 0.94934 1.00108 1.21179 0.95603 1.01573 0.96550 1.19853 0.95620 1.00225 0.93382 1.20763 0.91929 1.01877 1.02345 1.20686 0.92759 1.03832 0.97582 1.19637 0.93818 1.00990 0.94340 1.20811 0.99132 1.01916 0.95216 0.92531 0.92362 0.92957 0.91440 0.90796 0.83929 0.92185 0.93703 0.92805 0.92991 0.92953 0.94994 0.97932 0.93051 0.83769 0.86619 0.91572 0.91938 0.91675 0.86854 0.91614 0.91507 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.65 37.16 0.36 -1.04 16 2 C -0.12 -1.34 5.22 -26.73 -0.14 -1.47 16 3 C 0.13 1.64 1.35 -68.87 -0.09 1.55 16 4 H 0.05 0.66 5.63 -51.93 -0.29 0.36 16 5 N -0.67 -9.82 4.24 -100.96 -0.43 -10.25 16 6 C 0.08 1.31 2.42 -67.71 -0.16 1.15 16 7 H 0.07 1.25 7.80 -51.93 -0.41 0.85 16 8 C -0.18 -2.31 9.13 37.15 0.34 -1.97 16 9 C -0.09 -1.80 4.83 -26.73 -0.13 -1.92 16 10 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 11 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 12 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 13 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.91 -28.91 13.96 55.43 0.77 -28.14 16 15 Si 0.87 22.27 27.47 -169.99 -4.67 17.60 16 16 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.25 -5.99 6.14 56.52 0.35 -5.64 16 19 C -0.08 -1.22 4.84 -104.63 -0.51 -1.73 16 20 C -0.07 -1.24 9.32 -39.58 -0.37 -1.61 16 21 C -0.13 -2.22 9.70 -39.58 -0.38 -2.60 16 22 C -0.09 -1.33 5.88 -104.63 -0.62 -1.94 16 23 C -0.11 -1.32 10.01 36.00 0.36 -0.96 16 24 C -0.13 -1.76 9.36 -39.58 -0.37 -2.13 16 25 C -0.09 -1.18 5.88 -104.63 -0.62 -1.79 16 26 C -0.11 -1.17 9.22 36.00 0.33 -0.84 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.54 6.66 -51.93 -0.35 0.19 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.68 7.04 -51.93 -0.37 0.32 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.34 4.54 6.35 -39.29 -0.25 4.29 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.52 7.18 -51.93 -0.37 0.14 16 35 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.04 8.14 -51.94 -0.42 0.62 16 38 H 0.03 0.77 5.13 -51.93 -0.27 0.51 16 39 H 0.00 0.06 7.57 -51.93 -0.39 -0.33 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.14 2.79 5.47 -52.49 -0.29 2.50 16 42 H 0.12 1.98 7.76 -52.49 -0.41 1.57 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 45 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 46 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.63 5.50 -51.93 -0.29 0.35 16 49 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 LS Contribution 375.81 15.07 5.66 5.66 Total: -1.00 -31.49 375.81 -9.96 -41.44 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.76 Total: 4.74 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -2.54 Total: -31.05 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.35 Total: -38.39 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.49 -9.96 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.952 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds