Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 H 1.09002 * 109.46997 * 305.57050 * 3 2 1 5 5 N 1.46895 * 109.46853 * 65.56788 * 3 2 1 6 6 C 1.46904 * 111.00143 * 207.85629 * 5 3 2 7 7 H 1.08998 * 109.46560 * 319.71704 * 6 5 3 8 8 C 1.52991 * 109.47258 * 79.71681 * 6 5 3 9 9 C 1.53002 * 109.46889 * 199.71859 * 6 5 3 10 10 C 1.53003 * 109.47184 * 64.99845 * 9 6 5 11 11 C 1.50695 * 109.47047 * 179.97438 * 10 9 6 12 12 H 1.08004 * 120.00125 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00100 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00029 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46987 * 90.00477 * 15 13 11 17 17 H 1.48500 * 109.47087 * 210.00039 * 15 13 11 18 18 H 1.48489 * 109.47181 * 330.00048 * 15 13 11 19 19 C 1.50698 * 109.47033 * 185.56605 * 3 2 1 20 20 C 1.38255 * 119.99990 * 264.97969 * 19 3 2 21 21 C 1.38212 * 119.99985 * 180.02562 * 20 19 3 22 22 C 1.38260 * 119.99993 * 359.97438 * 21 20 19 23 23 C 1.50695 * 120.00008 * 179.97438 * 22 21 20 24 24 C 1.38214 * 119.99811 * 359.81488 * 22 21 20 25 25 C 1.38213 * 119.99774 * 85.00554 * 19 3 2 26 26 C 1.50697 * 120.00348 * 359.97438 * 25 19 3 27 27 H 1.08992 * 109.46877 * 174.12891 * 1 2 3 28 28 H 1.09003 * 109.46589 * 294.12556 * 1 2 3 29 29 H 1.08995 * 109.47370 * 54.12203 * 1 2 3 30 30 H 1.09006 * 109.46373 * 240.00520 * 2 1 3 31 31 H 1.08999 * 109.47240 * 120.00457 * 2 1 3 32 32 H 1.00903 * 111.00236 * 331.80808 * 5 3 2 33 33 H 1.09004 * 109.47457 * 174.61696 * 8 6 5 34 34 H 1.09003 * 109.47556 * 294.62204 * 8 6 5 35 35 H 1.08996 * 109.47430 * 54.62148 * 8 6 5 36 36 H 1.09005 * 109.46741 * 184.99514 * 9 6 5 37 37 H 1.08988 * 109.47418 * 304.99582 * 9 6 5 38 38 H 1.08995 * 109.46946 * 299.99561 * 10 9 6 39 39 H 1.09005 * 109.46910 * 59.99678 * 10 9 6 40 40 H 0.96997 * 120.00316 * 179.97438 * 14 13 11 41 41 H 1.07999 * 119.99898 * 359.97438 * 20 19 3 42 42 H 1.08002 * 120.00336 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.47204 * 89.99993 * 23 22 21 44 44 H 1.09004 * 109.47321 * 210.00107 * 23 22 21 45 45 H 1.09002 * 109.47371 * 329.99992 * 23 22 21 46 46 H 1.08004 * 120.00273 * 180.23013 * 24 22 21 47 47 H 1.08996 * 109.47012 * 90.00000 * 26 25 19 48 48 H 1.09003 * 109.47022 * 330.00079 * 26 25 19 49 49 H 1.08993 * 109.47655 * 210.00389 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5976 1.9843 -0.8359 5 7 1.6632 2.0950 1.2609 6 6 1.5168 3.5455 1.0799 7 1 2.3082 3.9117 0.4260 8 6 0.1552 3.8460 0.4503 9 6 1.6152 4.2416 2.4389 10 6 3.0201 4.0449 3.0121 11 6 3.1171 4.7310 4.3503 12 1 2.2623 5.2553 4.7516 13 6 4.2974 4.6904 5.0618 14 7 4.3822 5.2896 6.2295 15 14 5.7759 3.7843 4.3674 16 1 6.5902 4.7191 3.5499 17 1 6.6009 3.2550 5.4830 18 1 5.3121 2.6585 3.5174 19 6 3.5408 1.4447 -0.1378 20 6 4.3384 1.5118 0.9895 21 6 5.7147 1.5143 0.8631 22 6 6.2939 1.4492 -0.3907 23 6 7.7945 1.4525 -0.5286 24 6 5.4965 1.3777 -1.5174 25 6 4.1197 1.3801 -1.3912 26 6 3.2503 1.3069 -2.6199 27 1 -0.3633 -1.0222 -0.1051 28 1 -0.3632 0.4201 0.9380 29 1 -0.3634 0.6022 -0.8326 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.8196 1.6909 1.6392 33 1 0.0065 4.9248 0.4038 34 1 0.1209 3.4307 -0.5569 35 1 -0.6321 3.3966 1.0555 36 1 1.4184 5.3067 2.3166 37 1 0.8812 3.8125 3.1208 38 1 3.2168 2.9799 3.1344 39 1 3.7541 4.4741 2.3300 40 1 5.2124 5.2607 6.7303 41 1 3.8859 1.5631 1.9688 42 1 6.3378 1.5672 1.7436 43 1 8.1638 0.4273 -0.5050 44 1 8.0714 1.9168 -1.4751 45 1 8.2338 2.0159 0.2947 46 1 5.9489 1.3230 -2.4966 47 1 3.0337 2.3153 -2.9723 48 1 2.3173 0.7993 -2.3751 49 1 3.7710 0.7531 -3.4010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = -25.002233 kcal Electronic energy + Delta-G solvation = -24321.392150 eV Core-core repulsion = 21246.129679 eV Total energy + Delta-G solvation = -3075.262471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91434 -38.76067 -36.25381 -34.81432 -33.85391 -32.77561 -32.18417 -30.14874 -28.41382 -27.76618 -27.10120 -25.33877 -23.14793 -22.77510 -21.97400 -21.35998 -20.59081 -18.84107 -17.32186 -17.08385 -16.36226 -16.15323 -15.82379 -15.54892 -15.03590 -14.86330 -14.82945 -14.58424 -14.16625 -14.06283 -13.97478 -13.86128 -13.82856 -13.52248 -13.22418 -13.10598 -12.91196 -12.84027 -12.74850 -12.60695 -12.44995 -12.08432 -11.85783 -11.78897 -11.75000 -11.54835 -11.47904 -11.46684 -11.28687 -11.02042 -10.72165 -9.53328 -9.24151 -9.09611 -8.27894 -6.28858 0.49282 0.61473 1.32557 1.33780 1.49668 2.36863 2.88113 3.08668 3.28253 3.87332 3.97708 4.02487 4.07792 4.18666 4.21755 4.25630 4.34611 4.42630 4.44727 4.51187 4.57635 4.69279 4.73595 4.76268 4.79531 4.86422 4.88968 4.93407 5.00690 5.01615 5.03316 5.06105 5.09062 5.16839 5.25078 5.27853 5.34700 5.40043 5.41779 5.49785 5.60870 5.67933 5.71520 5.77539 5.84747 5.85578 6.25056 6.34052 6.37181 6.69553 6.80327 7.35376 8.88904 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.006937 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.277561 B = 4035.628771 C = 5854.159019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.134 3.866 4 H 0.066 0.934 5 N -0.686 5.686 6 C 0.096 3.904 7 H 0.058 0.942 8 C -0.170 4.170 9 C -0.086 4.086 10 C 0.009 3.991 11 C -0.525 4.525 12 H 0.029 0.971 13 C 0.005 3.995 14 N -0.955 5.955 15 Si 0.940 3.060 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.233 1.233 19 C -0.091 4.091 20 C -0.096 4.096 21 C -0.161 4.161 22 C -0.097 4.097 23 C -0.111 4.111 24 C -0.132 4.132 25 C -0.087 4.087 26 C -0.112 4.112 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.348 0.652 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.033 0.967 39 H -0.006 1.006 40 H 0.263 0.737 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.142 0.858 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -13.006 -22.135 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.024 3.976 4 H 0.084 0.916 5 N -0.319 5.319 6 C -0.014 4.014 7 H 0.077 0.923 8 C -0.229 4.229 9 C -0.124 4.124 10 C -0.028 4.028 11 C -0.563 4.563 12 H 0.047 0.953 13 C -0.191 4.191 14 N -0.597 5.597 15 Si 0.764 3.236 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.156 1.156 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.179 4.179 22 C -0.097 4.097 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.087 4.087 26 C -0.169 4.169 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.160 0.840 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.516 -12.943 -21.770 25.451 hybrid contribution 0.174 0.388 0.564 0.707 sum -2.341 -12.555 -21.206 24.755 Atomic orbital electron populations 1.21810 0.94268 1.02700 1.02017 1.21668 0.96691 0.94413 1.02739 1.20411 0.90382 0.95370 0.91398 0.91617 1.60375 1.41179 1.02968 1.27373 1.21450 0.96488 0.87876 0.95571 0.92338 1.22407 0.97035 1.02459 1.01036 1.21351 0.97437 0.98177 0.95481 1.19328 0.94385 0.96572 0.92537 1.21679 0.97712 1.32671 1.04255 0.95266 1.25932 1.02031 0.96204 0.94945 1.70078 1.27930 1.46574 1.15123 0.85825 0.78882 0.80653 0.78216 1.20311 1.21492 1.15608 1.19919 0.95988 1.01094 0.92212 1.21219 0.93098 0.97274 0.99796 1.21224 0.95537 1.03761 0.97364 1.20164 0.97315 0.99451 0.92808 1.20809 0.90001 1.02928 1.03049 1.21076 0.92908 1.02624 0.98393 1.20046 0.94461 0.99291 0.94948 1.20872 0.99128 1.02816 0.94038 0.91349 0.92831 0.91895 0.90284 0.92409 0.83094 0.92216 0.91507 0.91878 0.93736 0.93370 0.94872 0.98717 0.92829 0.86640 0.88049 0.90095 0.90025 0.92429 0.84007 0.90879 0.90514 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.65 71.98 0.69 -1.57 16 2 C -0.12 -2.25 5.22 30.60 0.16 -2.09 16 3 C 0.13 3.16 1.35 44.17 0.06 3.22 16 4 H 0.07 1.40 5.63 -2.39 -0.01 1.39 16 5 N -0.69 -19.38 4.24 -473.32 -2.01 -21.38 16 6 C 0.10 2.94 2.42 44.91 0.11 3.05 16 7 H 0.06 1.96 7.80 -2.39 -0.02 1.95 16 8 C -0.17 -3.94 9.13 71.98 0.66 -3.28 16 9 C -0.09 -3.46 4.83 30.60 0.15 -3.32 16 10 C 0.01 0.45 3.93 29.85 0.12 0.57 16 11 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 12 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 13 C 0.00 0.29 5.47 84.65 0.46 0.75 16 14 N -0.96 -62.79 13.96 21.45 0.30 -62.49 16 15 Si 0.94 47.49 27.47 68.60 1.88 49.38 16 16 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 17 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 18 H -0.23 -10.95 6.14 99.48 0.61 -10.33 16 19 C -0.09 -2.59 4.84 -19.87 -0.10 -2.69 16 20 C -0.10 -3.34 9.32 22.27 0.21 -3.13 16 21 C -0.16 -5.45 9.70 22.27 0.22 -5.23 16 22 C -0.10 -2.70 5.88 -19.87 -0.12 -2.81 16 23 C -0.11 -2.38 10.01 71.23 0.71 -1.67 16 24 C -0.13 -3.18 9.36 22.27 0.21 -2.97 16 25 C -0.09 -2.09 5.88 -19.87 -0.12 -2.21 16 26 C -0.11 -1.82 9.22 71.24 0.66 -1.17 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.86 6.66 -2.39 -0.02 0.84 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.34 7.04 -2.38 -0.02 1.32 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.35 8.82 6.35 -89.69 -0.57 8.25 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.28 7.18 -2.39 -0.02 1.26 16 35 H 0.06 1.35 8.06 -2.39 -0.02 1.33 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.03 1.64 5.13 -2.39 -0.01 1.63 16 39 H -0.01 -0.28 7.57 -2.38 -0.02 -0.30 16 40 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.12 4.61 5.47 -2.91 -0.02 4.59 16 42 H 0.10 3.56 7.76 -2.91 -0.02 3.54 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 45 H 0.06 1.30 8.09 -2.39 -0.02 1.29 16 46 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.11 5.50 -2.39 -0.01 1.09 16 49 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 Total: -1.00 -71.34 375.81 4.75 -66.59 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.24 Total: 24.05 kcal Atomic # 6 Polarization: -60.47 SS G_CDS: 4.33 Total: -56.14 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.71 Total: -83.87 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.88 Total: 49.38 kcal Total: -71.34 4.75 -66.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.588 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds