Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47000 * 2 1 4 4 C 1.52997 * 109.46862 * 119.99175 * 2 1 3 5 5 C 1.52999 * 109.47037 * 182.62230 * 4 2 1 6 6 C 1.50700 * 109.47137 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99976 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00202 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99753 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00392 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46758 * 60.00297 * 10 8 6 12 12 H 1.48501 * 109.47336 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47336 * 300.00391 * 10 8 6 14 14 N 1.46898 * 109.47180 * 239.99389 * 2 1 3 15 15 C 1.46903 * 110.99750 * 79.15349 * 14 2 1 16 16 C 1.50700 * 109.46937 * 173.60115 * 15 14 2 17 17 C 1.38228 * 120.00026 * 281.56162 * 16 15 14 18 18 C 1.38244 * 119.99987 * 179.76444 * 17 16 15 19 19 C 1.38239 * 119.99797 * 0.50690 * 18 17 16 20 20 C 1.38236 * 119.99937 * 359.74889 * 19 18 17 21 21 C 1.38236 * 119.99976 * 359.97438 * 20 19 18 22 22 C 1.46892 * 111.00346 * 315.19430 * 14 2 1 23 23 C 1.53001 * 109.47410 * 201.58362 * 22 14 2 24 24 C 1.53008 * 109.47006 * 81.58081 * 22 14 2 25 25 C 1.53007 * 109.47095 * 321.58708 * 22 14 2 26 26 H 1.09006 * 109.47406 * 51.14458 * 1 2 3 27 27 H 1.09004 * 109.47282 * 171.14203 * 1 2 3 28 28 H 1.09003 * 109.47352 * 291.14358 * 1 2 3 29 29 H 1.08995 * 109.47429 * 302.62557 * 4 2 1 30 30 H 1.09000 * 109.46995 * 62.62504 * 4 2 1 31 31 H 1.08996 * 109.47801 * 300.00399 * 5 4 2 32 32 H 1.09000 * 109.47004 * 60.00280 * 5 4 2 33 33 H 0.97005 * 119.99965 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46725 * 293.59881 * 15 14 2 35 35 H 1.08994 * 109.47590 * 53.60185 * 15 14 2 36 36 H 1.07994 * 120.00454 * 359.97438 * 17 16 15 37 37 H 1.08003 * 120.00128 * 180.23001 * 18 17 16 38 38 H 1.07997 * 119.99841 * 179.72275 * 19 18 17 39 39 H 1.07998 * 119.99938 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.99809 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46667 * 291.96455 * 23 22 14 42 42 H 1.08994 * 109.46995 * 51.96887 * 23 22 14 43 43 H 1.09002 * 109.47050 * 171.96605 * 23 22 14 44 44 H 1.08999 * 109.47308 * 183.74882 * 24 22 14 45 45 H 1.08994 * 109.47241 * 303.75054 * 24 22 14 46 46 H 1.09000 * 109.46753 * 63.75061 * 24 22 14 47 47 H 1.09002 * 109.46876 * 300.82666 * 25 22 14 48 48 H 1.08998 * 109.46967 * 60.83210 * 25 22 14 49 49 H 1.08996 * 109.46918 * 180.83425 * 25 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5685 -0.6642 1.2828 6 6 4.0708 -1.3750 2.5131 7 1 3.3699 -1.8229 3.2019 8 6 5.4251 -1.4535 2.7592 9 7 6.2786 -0.9076 1.9206 10 14 6.0479 -2.3351 4.2838 11 1 5.6065 -3.7527 4.2507 12 1 7.5315 -2.2798 4.3163 13 1 5.5007 -1.6745 5.4959 14 7 2.0196 -0.6926 -1.1993 15 6 1.9518 0.1826 -2.3772 16 6 2.6044 -0.5024 -3.5502 17 6 3.9824 -0.5300 -3.6554 18 6 4.5812 -1.1626 -4.7289 19 6 3.8016 -1.7584 -5.7027 20 6 2.4234 -1.7261 -5.6003 21 6 1.8248 -1.0985 -4.5238 22 6 1.2778 -1.9399 -1.4268 23 6 2.1118 -2.8768 -2.3029 24 6 -0.0442 -1.6260 -2.1302 25 6 0.9930 -2.6160 -0.0841 26 1 -0.3634 0.6447 -0.8003 27 1 -0.3634 -1.0154 -0.1582 28 1 -0.3634 0.3707 0.9585 29 1 1.6387 -0.2351 2.1386 30 1 1.7155 -1.7614 1.2262 31 1 3.9698 -1.1502 0.3936 32 1 3.8929 0.3762 1.3059 33 1 7.2315 -0.9625 2.0940 34 1 0.9088 0.3933 -2.6137 35 1 2.4723 1.1167 -2.1664 36 1 4.5914 -0.0604 -2.8971 37 1 5.6579 -1.1875 -4.8091 38 1 4.2693 -2.2487 -6.5436 39 1 1.8143 -2.1912 -6.3612 40 1 0.7481 -1.0730 -4.4440 41 1 2.1941 -2.4587 -3.3061 42 1 3.1070 -2.9869 -1.8722 43 1 1.6283 -3.8524 -2.3544 44 1 -0.6243 -2.5423 -2.2393 45 1 -0.6093 -0.9067 -1.5375 46 1 0.1592 -1.2053 -3.1150 47 1 1.9343 -2.8263 0.4237 48 1 0.3864 -1.9545 0.5344 49 1 0.4556 -3.5489 -0.2538 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490756.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = 101.197839 kcal Electronic energy + Delta-G solvation = -25036.267402 eV Core-core repulsion = 21966.477377 eV Total energy + Delta-G solvation = -3069.790025 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83301 -38.68676 -34.17387 -32.87262 -32.50361 -30.78894 -30.18479 -29.24974 -27.41553 -26.46086 -24.92552 -24.53436 -22.40366 -21.35536 -21.14448 -19.82437 -18.40307 -16.74248 -16.06913 -15.84017 -15.38576 -15.02058 -14.55217 -14.53425 -14.17690 -13.76055 -13.51788 -13.33318 -12.98187 -12.63724 -12.47306 -12.36557 -12.06139 -11.73819 -11.62860 -11.57764 -11.39591 -11.27215 -11.04444 -10.93727 -10.83706 -10.58595 -10.52439 -10.44212 -10.31328 -10.06231 -9.66969 -9.16656 -8.83537 -8.68938 -8.61927 -8.30207 -8.12350 -7.65439 -5.84195 -3.84823 1.48730 1.58312 3.40315 3.44700 3.47043 3.87495 4.41980 4.57281 4.90406 4.94561 5.11733 5.20222 5.25679 5.28747 5.41285 5.51199 5.51719 5.53809 5.58762 5.63552 5.72850 5.78828 5.84500 5.88419 5.95937 6.07593 6.11332 6.14010 6.21460 6.23606 6.28043 6.31758 6.42211 6.52574 6.55744 6.60150 6.70080 6.71919 6.79180 6.85576 6.91741 7.07272 7.16219 7.44765 7.68406 7.74024 7.90697 8.15464 8.31466 8.63582 9.24803 9.77477 11.26722 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.005225 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.768941 B = 5357.513714 C = 6337.759309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.086 3.914 3 H 0.070 0.930 4 C -0.152 4.152 5 C 0.034 3.966 6 C -0.516 4.516 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.884 3.116 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.279 1.279 14 N -0.499 5.499 15 C 0.086 3.914 16 C -0.061 4.061 17 C -0.092 4.092 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.120 4.120 22 C 0.117 3.883 23 C -0.163 4.163 24 C -0.226 4.226 25 C -0.177 4.177 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.032 0.968 32 H 0.003 0.997 33 H 0.257 0.743 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 -0.153 -14.261 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.189 4.189 5 C -0.003 4.003 6 C -0.555 4.555 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.712 3.288 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.205 1.205 14 N -0.222 5.222 15 C -0.041 4.041 16 C -0.062 4.062 17 C -0.110 4.110 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.138 4.138 22 C 0.028 3.972 23 C -0.220 4.220 24 C -0.283 4.283 25 C -0.233 4.233 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.599 -0.239 -14.187 17.711 hybrid contribution -0.296 -0.275 0.774 0.873 sum -10.895 -0.514 -13.413 17.288 Atomic orbital electron populations 1.23464 0.99387 1.03209 1.01098 1.21797 0.90935 0.98029 0.91479 0.91193 1.22873 1.01068 1.02344 0.92575 1.18926 0.88274 0.96300 0.96793 1.21322 0.91437 1.34809 1.07931 0.93307 1.24976 0.97183 0.95868 0.96281 1.69970 1.01855 1.45288 1.36311 0.86797 0.77581 0.80335 0.84050 1.20431 1.21466 1.20491 1.62423 1.54534 1.03857 1.01423 1.21123 0.98216 0.95749 0.89035 1.19750 0.93909 0.97500 0.94997 1.21136 0.94329 0.98371 0.97200 1.21175 0.99843 0.98170 0.94609 1.21068 0.93922 1.00355 0.99180 1.21010 0.94916 1.00717 0.98269 1.21109 0.99695 0.98551 0.94448 1.20819 0.90747 0.90583 0.95091 1.22519 1.00496 0.97506 1.01480 1.23632 0.99308 1.02824 1.02563 1.23101 1.03484 0.99638 0.97054 0.93607 0.88707 0.92737 0.94114 0.88406 0.94942 0.97886 0.93300 0.94024 0.90205 0.85372 0.86276 0.86673 0.86635 0.85802 0.90026 0.91776 0.93973 0.92979 0.89635 0.91486 0.88908 0.89756 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.90 6.67 37.16 0.25 -2.65 16 2 C 0.09 1.44 2.27 -67.72 -0.15 1.28 16 3 H 0.07 1.23 7.80 -51.93 -0.41 0.83 16 4 C -0.15 -3.09 3.97 -26.73 -0.11 -3.20 16 5 C 0.03 0.89 4.84 -27.88 -0.13 0.75 16 6 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 7 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 10 Si 0.88 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.50 -8.09 3.76 -212.51 -0.80 -8.89 16 15 C 0.09 1.22 4.56 -4.97 -0.02 1.20 16 16 C -0.06 -0.84 3.18 -104.63 -0.33 -1.17 16 17 C -0.09 -1.34 9.69 -39.58 -0.38 -1.72 16 18 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 19 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 20 C -0.13 -1.47 9.70 -39.58 -0.38 -1.86 16 21 C -0.12 -1.44 6.43 -39.58 -0.25 -1.70 16 22 C 0.12 1.73 0.66 -131.60 -0.09 1.64 16 23 C -0.16 -2.51 7.91 37.16 0.29 -2.22 16 24 C -0.23 -2.75 6.74 37.16 0.25 -2.50 16 25 C -0.18 -2.75 6.22 37.16 0.23 -2.52 16 26 H 0.05 0.56 6.86 -51.93 -0.36 0.20 16 27 H 0.09 1.24 2.80 -51.93 -0.15 1.09 16 28 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.93 2.83 -67.06 -0.19 1.74 16 31 H 0.03 0.91 7.68 -51.93 -0.40 0.51 16 32 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.04 0.53 5.41 -51.93 -0.28 0.25 16 35 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 36 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.33 5.47 -52.49 -0.29 1.04 16 41 H 0.08 1.17 2.66 -51.93 -0.14 1.03 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.04 0.60 8.13 -51.93 -0.42 0.17 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.01 3.61 -51.93 -0.19 0.82 16 46 H 0.07 0.77 2.82 -51.93 -0.15 0.62 16 47 H 0.09 1.75 6.31 -51.93 -0.33 1.42 16 48 H 0.08 1.26 3.40 -51.93 -0.18 1.08 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -30.45 346.21 -9.55 -40.00 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.64 Total: 5.25 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: -2.04 Total: -32.02 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.06 Total: -35.55 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.45 -9.55 -40.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490756.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.197 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds