Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47445 * 2 1 4 4 C 1.38240 * 120.00341 * 269.73065 * 3 2 1 5 5 C 1.38230 * 119.99842 * 179.74482 * 4 3 2 6 6 C 1.38235 * 120.00503 * 0.52396 * 5 4 3 7 7 C 1.50698 * 120.00329 * 179.77022 * 6 5 4 8 8 H 1.08997 * 109.47308 * 159.97666 * 7 6 5 9 9 C 1.52992 * 109.47075 * 279.97895 * 7 6 5 10 10 C 1.53003 * 109.47613 * 294.38044 * 9 7 6 11 11 N 1.46904 * 109.47167 * 39.97977 * 7 6 5 12 12 C 1.46897 * 110.99819 * 152.87062 * 11 7 6 13 13 H 1.09000 * 109.47382 * 34.04234 * 12 11 7 14 14 C 1.53004 * 109.46976 * 274.03883 * 12 11 7 15 15 C 1.52995 * 109.46897 * 154.04436 * 12 11 7 16 16 C 1.53006 * 109.47142 * 294.99820 * 15 12 11 17 17 C 1.50701 * 109.46981 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00399 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99715 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99949 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99715 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47110 * 90.00371 * 21 19 17 23 23 H 1.48507 * 109.46841 * 210.00320 * 21 19 17 24 24 H 1.48503 * 109.47331 * 329.99863 * 21 19 17 25 25 C 1.38234 * 119.99509 * 359.74853 * 6 5 4 26 26 C 1.38230 * 120.00489 * 359.97438 * 25 6 5 27 27 H 1.09006 * 109.46917 * 299.99654 * 1 2 3 28 28 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47171 * 59.99501 * 1 2 3 30 30 H 1.09001 * 109.47171 * 120.00499 * 2 1 3 31 31 H 1.08996 * 109.46907 * 240.00255 * 2 1 3 32 32 H 1.07998 * 119.99518 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.00041 * 180.29739 * 5 4 3 34 34 H 1.08999 * 109.47368 * 54.38006 * 9 7 6 35 35 H 1.09008 * 109.47517 * 174.38083 * 9 7 6 36 36 H 1.08998 * 109.47533 * 185.62966 * 10 9 7 37 37 H 1.08997 * 109.46949 * 305.63254 * 10 9 7 38 38 H 1.09003 * 109.46899 * 65.62534 * 10 9 7 39 39 H 1.00902 * 110.99464 * 276.82845 * 11 7 6 40 40 H 1.09003 * 109.46515 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47352 * 300.00370 * 14 12 11 42 42 H 1.09003 * 109.46734 * 60.00660 * 14 12 11 43 43 H 1.08997 * 109.47738 * 54.99601 * 15 12 11 44 44 H 1.09004 * 109.47421 * 174.99925 * 15 12 11 45 45 H 1.09002 * 109.46712 * 299.99985 * 16 15 12 46 46 H 1.08996 * 109.47200 * 59.99813 * 16 15 12 47 47 H 0.96999 * 120.00120 * 180.02562 * 20 19 17 48 48 H 1.08001 * 120.00064 * 179.97438 * 25 6 5 49 49 H 1.08000 * 120.00638 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7239 3.3756 -1.1970 6 6 2.9544 4.0272 0.0001 7 6 3.4562 5.4482 0.0001 8 1 3.2456 5.9079 0.9657 9 6 4.9655 5.4560 -0.2501 10 6 5.6810 4.7882 0.9259 11 7 2.7800 6.2064 -1.0610 12 6 2.7157 7.6356 -0.7275 13 1 3.6105 7.9202 -0.1741 14 6 1.4780 7.9037 0.1311 15 6 2.6301 8.4564 -2.0158 16 6 3.9227 8.2853 -2.8164 17 6 3.8387 9.0944 -4.0850 18 1 2.9519 9.6724 -4.2992 19 6 4.8936 9.0958 -4.9729 20 7 4.8201 9.8014 -6.0803 21 14 6.4272 8.0954 -4.6028 22 1 6.2764 6.7307 -5.1685 23 1 7.6086 8.7565 -5.2131 24 1 6.6157 8.0039 -3.1327 25 6 2.7240 3.3755 1.1972 26 6 2.2627 2.0724 1.1972 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1324 33 1 2.9036 3.8849 -2.1323 34 1 5.1847 4.9086 -1.1669 35 1 5.3121 6.4847 -0.3495 36 1 6.7592 4.8822 0.7961 37 1 5.3833 5.2735 1.8553 38 1 5.4103 3.7330 0.9642 39 1 3.2315 6.0628 -1.9518 40 1 1.4301 8.9643 0.3781 41 1 0.5832 7.6191 -0.4223 42 1 1.5390 7.3189 1.0490 43 1 1.7854 8.1107 -2.6116 44 1 2.4931 9.5089 -1.7677 45 1 4.7675 8.6312 -2.2206 46 1 4.0598 7.2329 -3.0646 47 1 5.5620 9.8021 -6.7051 48 1 2.9044 3.8844 2.1325 49 1 2.0831 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -13.373366 kcal Electronic energy + Delta-G solvation = -23359.914804 eV Core-core repulsion = 20285.156598 eV Total energy + Delta-G solvation = -3074.758206 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.81035 -37.76235 -35.17087 -33.42912 -32.71328 -30.99805 -30.60326 -29.66416 -28.78616 -25.65449 -24.79050 -23.44617 -22.74561 -21.49904 -21.05891 -20.00591 -19.63224 -16.92753 -16.31550 -15.84554 -15.40671 -15.03938 -14.86648 -14.37333 -14.14278 -13.77297 -13.70689 -13.55654 -13.24479 -13.08195 -12.94752 -12.54114 -12.47048 -12.32865 -12.04928 -11.83117 -11.72259 -11.43566 -11.40102 -11.28472 -11.19036 -11.01348 -10.95451 -10.79550 -10.57327 -10.43796 -9.96903 -9.78235 -9.45337 -9.19247 -8.82588 -8.55921 -8.44898 -8.05880 -6.05756 -4.03522 1.40936 1.49859 3.27436 3.35499 3.37364 3.79683 4.41194 4.42869 4.65940 4.75176 4.90989 4.99046 5.04842 5.13298 5.18325 5.20818 5.27820 5.38684 5.41698 5.42962 5.47992 5.55075 5.62865 5.68285 5.70734 5.77132 5.84346 5.87399 5.96896 6.01107 6.08611 6.10492 6.14286 6.17694 6.25936 6.29137 6.38781 6.44067 6.51985 6.65259 6.74194 6.75669 6.84902 7.08645 7.26294 7.30634 7.52316 7.74221 7.78969 8.53203 9.00117 9.56738 11.07860 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.003775 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.216931 B = 7414.925820 C = 7625.775425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.119 4.119 5 C -0.094 4.094 6 C -0.058 4.058 7 C 0.125 3.875 8 H 0.081 0.919 9 C -0.153 4.153 10 C -0.146 4.146 11 N -0.679 5.679 12 C 0.080 3.920 13 H 0.039 0.961 14 C -0.135 4.135 15 C -0.107 4.107 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.267 1.267 25 C -0.115 4.115 26 C -0.121 4.121 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.349 0.651 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.012 0.988 46 H 0.008 0.992 47 H 0.263 0.737 48 H 0.116 0.884 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -17.234 16.372 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.137 4.137 5 C -0.112 4.112 6 C -0.058 4.058 7 C 0.015 3.985 8 H 0.100 0.900 9 C -0.192 4.192 10 C -0.204 4.204 11 N -0.312 5.312 12 C -0.029 4.029 13 H 0.057 0.943 14 C -0.193 4.193 15 C -0.144 4.144 16 C -0.050 4.050 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.192 1.192 25 C -0.133 4.133 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.171 0.829 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.030 0.970 46 H 0.026 0.974 47 H 0.072 0.928 48 H 0.134 0.866 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.785 -17.291 16.425 24.323 hybrid contribution 1.833 -0.153 -0.165 1.847 sum -2.952 -17.443 16.260 24.029 Atomic orbital electron populations 1.21745 0.94884 1.01400 1.02336 1.20504 0.96097 0.92980 1.02438 1.19809 1.00070 0.96113 0.93309 1.21000 1.00346 0.95026 0.97295 1.20966 0.98153 0.93933 0.98150 1.19776 0.97982 0.95108 0.92981 1.20547 0.90819 0.90713 0.96455 0.90040 1.22275 0.95801 1.01694 0.99390 1.21714 0.99947 1.00805 0.97912 1.60702 1.56745 1.08691 1.05074 1.21654 0.96676 0.87228 0.97322 0.94261 1.21784 0.98604 1.00063 0.98885 1.21667 1.00342 0.98552 0.93880 1.19596 0.93344 0.96116 0.95988 1.21134 1.03486 1.28415 1.02584 0.91001 1.25042 0.98383 0.95202 0.94855 1.69912 1.32297 1.41326 1.10683 0.86808 0.83131 0.80572 0.78939 1.20253 1.21413 1.19152 1.20922 1.00208 0.94842 0.97354 1.20880 1.00901 0.94963 0.97188 0.92633 0.92666 0.92450 0.91418 0.91290 0.86493 0.85962 0.91581 0.91295 0.92973 0.92915 0.92508 0.82878 0.92929 0.92250 0.93787 0.91876 0.92092 0.97007 0.97394 0.92758 0.86618 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.70 6.06 -27.89 -0.17 -0.87 16 3 C -0.09 -1.00 5.13 -104.62 -0.54 -1.54 16 4 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 5 C -0.09 -1.24 9.32 -39.59 -0.37 -1.61 16 6 C -0.06 -0.74 4.26 -104.63 -0.45 -1.19 16 7 C 0.12 1.67 2.06 -68.87 -0.14 1.53 16 8 H 0.08 1.06 7.05 -51.93 -0.37 0.69 16 9 C -0.15 -2.05 5.34 -26.73 -0.14 -2.19 16 10 C -0.15 -1.64 9.50 37.16 0.35 -1.29 16 11 N -0.68 -10.47 5.48 -100.96 -0.55 -11.02 16 12 C 0.08 1.29 2.43 -67.71 -0.16 1.13 16 13 H 0.04 0.64 7.26 -51.93 -0.38 0.26 16 14 C -0.14 -1.91 9.41 37.16 0.35 -1.56 16 15 C -0.11 -2.07 4.74 -26.73 -0.13 -2.20 16 16 C -0.01 -0.30 3.87 -27.88 -0.11 -0.41 16 17 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 21 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 25 C -0.11 -1.32 8.94 -39.59 -0.35 -1.67 16 26 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.67 7.32 -52.48 -0.38 1.29 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.02 7.56 -51.92 -0.39 0.63 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.63 7.13 -51.93 -0.37 0.26 16 39 H 0.35 5.86 5.64 -39.29 -0.22 5.64 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.57 7.53 -51.93 -0.39 0.18 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 46 H 0.01 0.18 5.86 -51.93 -0.30 -0.12 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.12 1.15 8.04 -52.49 -0.42 0.73 16 49 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -29.97 383.74 -10.45 -40.43 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -9.10 Total: 4.32 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -2.69 Total: -29.33 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.22 Total: -38.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.97 -10.45 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.055 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds