Wall clock time and date at job start Tue Mar 31 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47445 * 2 1 4 4 C 1.38240 * 120.00341 * 269.73065 * 3 2 1 5 5 C 1.38230 * 119.99842 * 179.74482 * 4 3 2 6 6 C 1.38235 * 120.00503 * 0.52396 * 5 4 3 7 7 C 1.50698 * 120.00329 * 179.77022 * 6 5 4 8 8 H 1.08997 * 109.47308 * 159.97666 * 7 6 5 9 9 C 1.52992 * 109.47075 * 279.97895 * 7 6 5 10 10 C 1.53003 * 109.47613 * 294.38044 * 9 7 6 11 11 N 1.46904 * 109.47167 * 39.97977 * 7 6 5 12 12 C 1.46897 * 110.99819 * 152.87062 * 11 7 6 13 13 H 1.09000 * 109.47382 * 34.04234 * 12 11 7 14 14 C 1.53004 * 109.46976 * 274.03883 * 12 11 7 15 15 C 1.52995 * 109.46897 * 154.04436 * 12 11 7 16 16 C 1.53006 * 109.47142 * 294.99820 * 15 12 11 17 17 C 1.50701 * 109.46981 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00399 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99715 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99949 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99715 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47110 * 90.00371 * 21 19 17 23 23 H 1.48507 * 109.46841 * 210.00320 * 21 19 17 24 24 H 1.48503 * 109.47331 * 329.99863 * 21 19 17 25 25 C 1.38234 * 119.99509 * 359.74853 * 6 5 4 26 26 C 1.38230 * 120.00489 * 359.97438 * 25 6 5 27 27 H 1.09006 * 109.46917 * 299.99654 * 1 2 3 28 28 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47171 * 59.99501 * 1 2 3 30 30 H 1.09001 * 109.47171 * 120.00499 * 2 1 3 31 31 H 1.08996 * 109.46907 * 240.00255 * 2 1 3 32 32 H 1.07998 * 119.99518 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.00041 * 180.29739 * 5 4 3 34 34 H 1.08999 * 109.47368 * 54.38006 * 9 7 6 35 35 H 1.09008 * 109.47517 * 174.38083 * 9 7 6 36 36 H 1.08998 * 109.47533 * 185.62966 * 10 9 7 37 37 H 1.08997 * 109.46949 * 305.63254 * 10 9 7 38 38 H 1.09003 * 109.46899 * 65.62534 * 10 9 7 39 39 H 1.00902 * 110.99464 * 276.82845 * 11 7 6 40 40 H 1.09003 * 109.46515 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47352 * 300.00370 * 14 12 11 42 42 H 1.09003 * 109.46734 * 60.00660 * 14 12 11 43 43 H 1.08997 * 109.47738 * 54.99601 * 15 12 11 44 44 H 1.09004 * 109.47421 * 174.99925 * 15 12 11 45 45 H 1.09002 * 109.46712 * 299.99985 * 16 15 12 46 46 H 1.08996 * 109.47200 * 59.99813 * 16 15 12 47 47 H 0.96999 * 120.00120 * 180.02562 * 20 19 17 48 48 H 1.08001 * 120.00064 * 179.97438 * 25 6 5 49 49 H 1.08000 * 120.00638 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7239 3.3756 -1.1970 6 6 2.9544 4.0272 0.0001 7 6 3.4562 5.4482 0.0001 8 1 3.2456 5.9079 0.9657 9 6 4.9655 5.4560 -0.2501 10 6 5.6810 4.7882 0.9259 11 7 2.7800 6.2064 -1.0610 12 6 2.7157 7.6356 -0.7275 13 1 3.6105 7.9202 -0.1741 14 6 1.4780 7.9037 0.1311 15 6 2.6301 8.4564 -2.0158 16 6 3.9227 8.2853 -2.8164 17 6 3.8387 9.0944 -4.0850 18 1 2.9519 9.6724 -4.2992 19 6 4.8936 9.0958 -4.9729 20 7 4.8201 9.8014 -6.0803 21 14 6.4272 8.0954 -4.6028 22 1 6.2764 6.7307 -5.1685 23 1 7.6086 8.7565 -5.2131 24 1 6.6157 8.0039 -3.1327 25 6 2.7240 3.3755 1.1972 26 6 2.2627 2.0724 1.1972 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1324 33 1 2.9036 3.8849 -2.1323 34 1 5.1847 4.9086 -1.1669 35 1 5.3121 6.4847 -0.3495 36 1 6.7592 4.8822 0.7961 37 1 5.3833 5.2735 1.8553 38 1 5.4103 3.7330 0.9642 39 1 3.2315 6.0628 -1.9518 40 1 1.4301 8.9643 0.3781 41 1 0.5832 7.6191 -0.4223 42 1 1.5390 7.3189 1.0490 43 1 1.7854 8.1107 -2.6116 44 1 2.4931 9.5089 -1.7677 45 1 4.7675 8.6312 -2.2206 46 1 4.0598 7.2329 -3.0646 47 1 5.5620 9.8021 -6.7051 48 1 2.9044 3.8844 2.1325 49 1 2.0831 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:06 Heat of formation + Delta-G solvation = -28.026728 kcal Electronic energy + Delta-G solvation = -23360.550221 eV Core-core repulsion = 20285.156598 eV Total energy + Delta-G solvation = -3075.393623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74158 -38.91005 -36.39830 -34.92100 -34.06810 -32.34287 -31.74215 -30.85866 -29.75715 -27.24305 -25.98548 -24.28831 -23.63132 -22.93491 -22.27400 -21.12746 -20.89386 -18.97246 -17.42315 -16.94305 -16.45697 -16.30082 -16.02883 -15.81469 -15.22330 -15.01162 -14.65805 -14.56701 -14.46417 -14.34373 -14.08243 -13.93432 -13.68712 -13.36374 -13.22804 -13.03857 -12.88684 -12.73733 -12.65555 -12.34175 -12.25196 -12.11128 -12.00991 -11.86326 -11.81403 -11.59345 -11.53370 -11.43726 -11.35040 -11.10417 -10.78253 -9.70962 -9.39414 -9.19212 -8.31558 -6.35205 0.52959 0.61410 1.31816 1.33392 1.44631 2.32553 2.89321 3.03589 3.28763 3.81420 3.90760 4.00848 4.04612 4.11696 4.19048 4.26710 4.28602 4.37503 4.39412 4.53465 4.55607 4.57651 4.68214 4.71900 4.76297 4.79951 4.87266 4.88812 5.00993 5.02439 5.06893 5.10713 5.11572 5.12963 5.16202 5.24897 5.29253 5.35013 5.40871 5.42265 5.50778 5.53565 5.64550 5.65489 5.81348 5.82543 6.21012 6.27437 6.29867 6.44471 6.73174 7.29059 8.85554 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.003775 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.216931 B = 7414.925820 C = 7625.775425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.130 4.130 5 C -0.113 4.113 6 C -0.070 4.070 7 C 0.130 3.870 8 H 0.091 0.909 9 C -0.151 4.151 10 C -0.139 4.139 11 N -0.684 5.684 12 C 0.089 3.911 13 H 0.043 0.957 14 C -0.129 4.129 15 C -0.099 4.099 16 C -0.005 4.005 17 C -0.531 4.531 18 H 0.030 0.970 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.247 1.247 25 C -0.116 4.116 26 C -0.123 4.123 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.339 0.661 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.014 0.986 46 H 0.017 0.983 47 H 0.266 0.734 48 H 0.134 0.866 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 -19.559 19.200 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.148 4.148 5 C -0.132 4.132 6 C -0.070 4.070 7 C 0.020 3.980 8 H 0.109 0.891 9 C -0.190 4.190 10 C -0.197 4.197 11 N -0.316 5.316 12 C -0.020 4.020 13 H 0.061 0.939 14 C -0.187 4.187 15 C -0.137 4.137 16 C -0.042 4.042 17 C -0.569 4.569 18 H 0.048 0.952 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.772 3.228 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.171 1.171 25 C -0.135 4.135 26 C -0.141 4.141 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.151 0.849 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.210 -19.621 19.277 27.827 hybrid contribution 1.552 0.586 -1.085 1.982 sum -2.658 -19.035 18.192 26.464 Atomic orbital electron populations 1.21730 0.94488 1.02260 1.01713 1.20554 0.96330 0.91583 1.03429 1.20120 0.99161 0.97220 0.92940 1.21163 1.00570 0.94756 0.98350 1.20980 0.99514 0.94750 0.97923 1.19748 0.98997 0.94821 0.93455 1.20553 0.90591 0.90938 0.95872 0.89127 1.22238 0.96134 1.00761 0.99916 1.21660 0.99856 1.00775 0.97410 1.60754 1.57239 1.08311 1.05262 1.21537 0.97952 0.87119 0.95440 0.93927 1.21719 0.96988 1.01014 0.98940 1.21533 0.97883 0.99086 0.95167 1.19493 0.95285 0.95464 0.94005 1.21503 1.02091 1.28430 1.04840 0.95153 1.26017 1.02239 0.96481 0.94490 1.70069 1.33726 1.43363 1.12081 0.85680 0.78279 0.78957 0.79869 1.19080 1.21046 1.17095 1.21139 0.99678 0.95253 0.97409 1.21202 0.99974 0.94782 0.98119 0.92767 0.91106 0.93554 0.89924 0.90844 0.85844 0.87471 0.92850 0.92775 0.92647 0.91588 0.92271 0.84073 0.91988 0.92973 0.92087 0.93158 0.92572 0.96793 0.96477 0.92530 0.84852 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.08 -1.17 6.06 29.84 0.18 -0.99 16 3 C -0.09 -1.84 5.13 -19.86 -0.10 -1.94 16 4 C -0.13 -2.98 9.70 22.27 0.22 -2.76 16 5 C -0.11 -2.95 9.32 22.27 0.21 -2.74 16 6 C -0.07 -1.69 4.26 -19.87 -0.08 -1.77 16 7 C 0.13 3.27 2.06 44.17 0.09 3.36 16 8 H 0.09 2.10 7.05 -2.39 -0.02 2.09 16 9 C -0.15 -3.84 5.34 30.59 0.16 -3.68 16 10 C -0.14 -2.80 9.50 71.98 0.68 -2.11 16 11 N -0.68 -20.57 5.48 -473.33 -2.59 -23.16 16 12 C 0.09 2.76 2.43 44.92 0.11 2.87 16 13 H 0.04 1.31 7.26 -2.39 -0.02 1.29 16 14 C -0.13 -3.38 9.41 71.98 0.68 -2.71 16 15 C -0.10 -3.87 4.74 30.59 0.14 -3.73 16 16 C 0.00 -0.23 3.87 29.85 0.12 -0.12 16 17 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 18 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 19 C 0.00 0.26 5.47 84.66 0.46 0.72 16 20 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 21 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 25 C -0.12 -2.36 8.94 22.27 0.20 -2.16 16 26 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 31 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.11 3.02 7.32 -2.91 -0.02 3.00 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.52 7.56 -2.38 -0.02 1.50 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.16 7.13 -2.39 -0.02 1.15 16 39 H 0.34 11.36 5.64 -89.69 -0.51 10.86 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.41 7.53 -2.39 -0.02 1.39 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 46 H 0.02 0.77 5.86 -2.39 -0.01 0.76 16 47 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.13 2.18 8.04 -2.91 -0.02 2.16 16 49 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -65.85 383.74 4.15 -61.70 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.32 Total: 26.99 kcal Atomic # 6 Polarization: -56.10 SS G_CDS: 4.24 Total: -51.86 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.30 Total: -83.44 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Total: -65.85 4.15 -61.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.669 kcal (2) G-P(sol) polarization free energy of solvation -65.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds