Wall clock time and date at job start Tue Mar 31 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47171 * 2 1 4 4 C 1.38233 * 120.00242 * 269.72345 * 3 2 1 5 5 C 1.38228 * 120.00411 * 179.81093 * 4 3 2 6 6 C 1.38238 * 120.00045 * 0.39968 * 5 4 3 7 7 C 1.50696 * 120.00263 * 179.83652 * 6 5 4 8 8 H 1.09001 * 109.47529 * 160.02198 * 7 6 5 9 9 C 1.52999 * 109.46904 * 280.02238 * 7 6 5 10 10 C 1.53001 * 109.46977 * 185.13484 * 9 7 6 11 11 N 1.46900 * 109.47312 * 40.02050 * 7 6 5 12 12 C 1.46897 * 110.99991 * 84.64386 * 11 7 6 13 13 H 1.09002 * 109.47225 * 323.39794 * 12 11 7 14 14 C 1.52996 * 109.47259 * 83.40105 * 12 11 7 15 15 C 1.53007 * 109.47026 * 203.40463 * 12 11 7 16 16 C 1.52994 * 109.47155 * 64.99541 * 15 12 11 17 17 C 1.50697 * 109.46962 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00239 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99971 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47132 * 90.00015 * 21 19 17 23 23 H 1.48495 * 109.47429 * 210.00101 * 21 19 17 24 24 H 1.48504 * 109.46978 * 329.99999 * 21 19 17 25 25 C 1.38240 * 119.99781 * 359.85486 * 6 5 4 26 26 C 1.38233 * 120.00123 * 89.99907 * 3 2 1 27 27 H 1.08996 * 109.47215 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46894 * 300.00563 * 1 2 3 29 29 H 1.09000 * 109.47005 * 59.99771 * 1 2 3 30 30 H 1.09000 * 109.47005 * 120.00229 * 2 1 3 31 31 H 1.09003 * 109.47329 * 239.99744 * 2 1 3 32 32 H 1.08000 * 119.99726 * 0.02562 * 4 3 2 33 33 H 1.08007 * 120.00361 * 180.23452 * 5 4 3 34 34 H 1.09002 * 109.47159 * 305.13155 * 9 7 6 35 35 H 1.09001 * 109.47472 * 65.13104 * 9 7 6 36 36 H 1.08995 * 109.47102 * 304.57477 * 10 9 7 37 37 H 1.08993 * 109.47571 * 64.58426 * 10 9 7 38 38 H 1.09009 * 109.46873 * 184.58035 * 10 9 7 39 39 H 1.00895 * 110.99873 * 320.68628 * 11 7 6 40 40 H 1.09000 * 109.47221 * 184.59724 * 14 12 11 41 41 H 1.08992 * 109.47256 * 304.59891 * 14 12 11 42 42 H 1.09007 * 109.47207 * 64.60000 * 14 12 11 43 43 H 1.09004 * 109.47064 * 185.00004 * 15 12 11 44 44 H 1.09004 * 109.46496 * 304.99649 * 15 12 11 45 45 H 1.08995 * 109.47313 * 300.00308 * 16 15 12 46 46 H 1.09004 * 109.47331 * 60.00619 * 16 15 12 47 47 H 0.97000 * 120.00398 * 179.97438 * 20 19 17 48 48 H 1.07995 * 119.99981 * 179.97438 * 25 6 5 49 49 H 1.08002 * 120.00141 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7253 3.3751 -1.1972 6 6 2.9544 4.0273 0.0000 7 6 3.4562 5.4482 0.0000 8 1 3.2453 5.9081 0.9655 9 6 4.9656 5.4560 -0.2498 10 6 5.4961 6.8855 -0.1230 11 7 2.7804 6.2062 -1.0615 12 6 1.4854 6.7216 -0.5975 13 1 1.0191 5.9908 0.0632 14 6 1.7006 8.0320 0.1624 15 6 0.5758 6.9738 -1.8017 16 6 0.2595 5.6441 -2.4892 17 6 -0.6369 5.8925 -3.6749 18 1 -0.9494 6.8982 -3.9143 19 6 -1.0582 4.8358 -4.4540 20 7 -0.6773 3.6112 -4.1627 21 14 -2.1688 5.1437 -5.9241 22 1 -1.3374 5.3797 -7.1317 23 1 -3.0375 3.9598 -6.1448 24 1 -3.0144 6.3365 -5.6644 25 6 2.7235 3.3758 1.1972 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 2.0921 1.5601 -2.1324 33 1 2.9059 3.8840 -2.1325 34 1 5.4587 4.8190 0.4846 35 1 5.1700 5.0801 -1.2523 36 1 4.9462 7.5385 -0.8004 37 1 5.3653 7.2321 0.9021 38 1 6.5553 6.9041 -0.3803 39 1 2.6694 5.6445 -1.8923 40 1 0.7514 8.3720 0.5764 41 1 2.4127 7.8700 0.9715 42 1 2.0911 8.7875 -0.5195 43 1 -0.3511 7.4388 -1.4658 44 1 1.0801 7.6359 -2.5056 45 1 1.1863 5.1792 -2.8250 46 1 -0.2449 4.9821 -1.7854 47 1 -0.9740 2.8677 -4.7106 48 1 2.9029 3.8851 2.1324 49 1 2.0823 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:10 Heat of formation + Delta-G solvation = -14.975898 kcal Electronic energy + Delta-G solvation = -23975.355562 eV Core-core repulsion = 20900.527865 eV Total energy + Delta-G solvation = -3074.827697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.61931 -37.39936 -34.81027 -33.30512 -32.67828 -30.64447 -30.28358 -29.39271 -28.30419 -25.49196 -24.77847 -23.01347 -22.50101 -21.45120 -20.93852 -19.70030 -19.43072 -16.64694 -16.07143 -15.74390 -15.00643 -14.74085 -14.52576 -14.40429 -14.00175 -13.63439 -13.42072 -13.18484 -12.93087 -12.87684 -12.49468 -12.45283 -12.31911 -12.02552 -11.75540 -11.57015 -11.35692 -11.22588 -11.10611 -11.03785 -10.93517 -10.76649 -10.64312 -10.53064 -10.44887 -10.34553 -10.13023 -9.72472 -9.23359 -8.98499 -8.51222 -8.32540 -8.18511 -7.91137 -5.97905 -3.99402 1.67885 1.80361 3.32215 3.38655 3.42205 4.09939 4.47386 4.62575 4.90586 5.01788 5.13565 5.32173 5.32555 5.38176 5.41431 5.44076 5.55816 5.60708 5.64803 5.74516 5.78131 5.81065 5.86239 5.93798 5.98242 6.04438 6.13090 6.14821 6.18017 6.23630 6.35103 6.39441 6.41958 6.44777 6.46832 6.54983 6.59296 6.61505 6.79445 6.94646 6.97177 6.99965 7.14018 7.38584 7.59898 7.67023 7.85643 7.95294 8.02667 8.45830 9.06691 9.64132 11.12481 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.006404 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.307767 B = 4371.061803 C = 6537.852670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.088 4.088 4 C -0.097 4.097 5 C -0.094 4.094 6 C -0.115 4.115 7 C 0.127 3.873 8 H 0.078 0.922 9 C -0.104 4.104 10 C -0.143 4.143 11 N -0.676 5.676 12 C 0.083 3.917 13 H 0.037 0.963 14 C -0.135 4.135 15 C -0.115 4.115 16 C 0.026 3.974 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.117 4.117 26 C -0.123 4.123 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.352 0.648 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.015 0.985 46 H 0.011 0.989 47 H 0.258 0.742 48 H 0.113 0.887 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.169 -2.227 11.091 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.117 4.117 7 C 0.016 3.984 8 H 0.096 0.904 9 C -0.142 4.142 10 C -0.200 4.200 11 N -0.310 5.310 12 C -0.027 4.027 13 H 0.055 0.945 14 C -0.193 4.193 15 C -0.153 4.153 16 C -0.011 4.011 17 C -0.557 4.557 18 H 0.071 0.929 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.136 4.136 26 C -0.141 4.141 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.176 0.824 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.131 0.869 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.474 -1.802 11.143 14.736 hybrid contribution -1.336 -0.802 -0.847 1.774 sum 8.138 -2.605 10.296 13.379 Atomic orbital electron populations 1.21754 0.94685 1.01236 1.02850 1.20492 0.96326 0.92878 1.02095 1.19836 0.99518 0.96237 0.93263 1.21014 0.98053 0.94951 0.97507 1.20939 0.98216 0.94498 0.97567 1.20685 1.00120 0.97485 0.93379 1.20606 0.94006 0.87575 0.96200 0.90364 1.21460 0.93797 0.97322 1.01643 1.21668 0.99683 0.97142 1.01503 1.60832 1.22388 1.40986 1.06841 1.21569 0.88944 0.95146 0.96999 0.94474 1.21799 1.00211 0.97859 0.99460 1.21827 0.97039 1.01182 0.95238 1.19087 0.96216 0.91035 0.94806 1.21243 1.29738 0.93202 1.11551 0.92862 1.24983 0.96376 0.95241 0.97614 1.69963 1.45379 0.98487 1.39167 0.86665 0.80803 0.77657 0.83292 1.20730 1.21342 1.19987 1.20884 1.00733 0.94849 0.97147 1.20869 1.01098 0.95030 0.97104 0.92862 0.92835 0.91705 0.91719 0.91292 0.86020 0.85976 0.92465 0.91950 0.90994 0.93734 0.93802 0.82441 0.93273 0.93722 0.92485 0.92950 0.92603 0.96682 0.97045 0.93222 0.86855 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.89 37.16 0.37 -1.59 16 2 C -0.08 -1.03 6.07 -27.88 -0.17 -1.20 16 3 C -0.09 -1.35 5.13 -104.63 -0.54 -1.88 16 4 C -0.10 -1.67 9.70 -39.59 -0.38 -2.05 16 5 C -0.09 -1.64 9.05 -39.59 -0.36 -1.99 16 6 C -0.12 -1.81 4.58 -104.62 -0.48 -2.29 16 7 C 0.13 1.84 2.03 -68.87 -0.14 1.70 16 8 H 0.08 1.11 6.84 -51.93 -0.36 0.75 16 9 C -0.10 -1.33 5.59 -26.73 -0.15 -1.48 16 10 C -0.14 -1.68 9.85 37.16 0.37 -1.31 16 11 N -0.68 -11.14 5.42 -100.95 -0.55 -11.69 16 12 C 0.08 1.46 2.47 -67.71 -0.17 1.29 16 13 H 0.04 0.71 7.64 -51.93 -0.40 0.31 16 14 C -0.14 -2.00 9.40 37.16 0.35 -1.65 16 15 C -0.11 -2.39 4.76 -26.73 -0.13 -2.52 16 16 C 0.03 0.65 4.80 -27.89 -0.13 0.51 16 17 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.12 -1.71 9.67 -39.58 -0.38 -2.09 16 26 C -0.12 -1.76 9.70 -39.58 -0.38 -2.14 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.12 2.24 6.09 -52.48 -0.32 1.92 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.35 6.51 4.16 -39.29 -0.16 6.35 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.60 7.25 -51.93 -0.38 0.23 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.02 0.39 5.93 -51.93 -0.31 0.08 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.11 1.41 8.04 -52.49 -0.42 0.99 16 49 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -28.71 386.45 -10.78 -39.49 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -9.04 Total: 7.04 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -2.74 Total: -32.06 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.19 Total: -36.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.71 -10.78 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.515 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds