Wall clock time and date at job start Tue Mar 31 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47171 * 2 1 4 4 C 1.38233 * 120.00242 * 269.72345 * 3 2 1 5 5 C 1.38228 * 120.00411 * 179.81093 * 4 3 2 6 6 C 1.38238 * 120.00045 * 0.39968 * 5 4 3 7 7 C 1.50696 * 120.00263 * 179.83652 * 6 5 4 8 8 H 1.09001 * 109.47529 * 160.02198 * 7 6 5 9 9 C 1.52999 * 109.46904 * 280.02238 * 7 6 5 10 10 C 1.53001 * 109.46977 * 185.13484 * 9 7 6 11 11 N 1.46900 * 109.47312 * 40.02050 * 7 6 5 12 12 C 1.46897 * 110.99991 * 84.64386 * 11 7 6 13 13 H 1.09002 * 109.47225 * 323.39794 * 12 11 7 14 14 C 1.52996 * 109.47259 * 83.40105 * 12 11 7 15 15 C 1.53007 * 109.47026 * 203.40463 * 12 11 7 16 16 C 1.52994 * 109.47155 * 64.99541 * 15 12 11 17 17 C 1.50697 * 109.46962 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00239 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99971 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47132 * 90.00015 * 21 19 17 23 23 H 1.48495 * 109.47429 * 210.00101 * 21 19 17 24 24 H 1.48504 * 109.46978 * 329.99999 * 21 19 17 25 25 C 1.38240 * 119.99781 * 359.85486 * 6 5 4 26 26 C 1.38233 * 120.00123 * 89.99907 * 3 2 1 27 27 H 1.08996 * 109.47215 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46894 * 300.00563 * 1 2 3 29 29 H 1.09000 * 109.47005 * 59.99771 * 1 2 3 30 30 H 1.09000 * 109.47005 * 120.00229 * 2 1 3 31 31 H 1.09003 * 109.47329 * 239.99744 * 2 1 3 32 32 H 1.08000 * 119.99726 * 0.02562 * 4 3 2 33 33 H 1.08007 * 120.00361 * 180.23452 * 5 4 3 34 34 H 1.09002 * 109.47159 * 305.13155 * 9 7 6 35 35 H 1.09001 * 109.47472 * 65.13104 * 9 7 6 36 36 H 1.08995 * 109.47102 * 304.57477 * 10 9 7 37 37 H 1.08993 * 109.47571 * 64.58426 * 10 9 7 38 38 H 1.09009 * 109.46873 * 184.58035 * 10 9 7 39 39 H 1.00895 * 110.99873 * 320.68628 * 11 7 6 40 40 H 1.09000 * 109.47221 * 184.59724 * 14 12 11 41 41 H 1.08992 * 109.47256 * 304.59891 * 14 12 11 42 42 H 1.09007 * 109.47207 * 64.60000 * 14 12 11 43 43 H 1.09004 * 109.47064 * 185.00004 * 15 12 11 44 44 H 1.09004 * 109.46496 * 304.99649 * 15 12 11 45 45 H 1.08995 * 109.47313 * 300.00308 * 16 15 12 46 46 H 1.09004 * 109.47331 * 60.00619 * 16 15 12 47 47 H 0.97000 * 120.00398 * 179.97438 * 20 19 17 48 48 H 1.07995 * 119.99981 * 179.97438 * 25 6 5 49 49 H 1.08002 * 120.00141 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7253 3.3751 -1.1972 6 6 2.9544 4.0273 0.0000 7 6 3.4562 5.4482 0.0000 8 1 3.2453 5.9081 0.9655 9 6 4.9656 5.4560 -0.2498 10 6 5.4961 6.8855 -0.1230 11 7 2.7804 6.2062 -1.0615 12 6 1.4854 6.7216 -0.5975 13 1 1.0191 5.9908 0.0632 14 6 1.7006 8.0320 0.1624 15 6 0.5758 6.9738 -1.8017 16 6 0.2595 5.6441 -2.4892 17 6 -0.6369 5.8925 -3.6749 18 1 -0.9494 6.8982 -3.9143 19 6 -1.0582 4.8358 -4.4540 20 7 -0.6773 3.6112 -4.1627 21 14 -2.1688 5.1437 -5.9241 22 1 -1.3374 5.3797 -7.1317 23 1 -3.0375 3.9598 -6.1448 24 1 -3.0144 6.3365 -5.6644 25 6 2.7235 3.3758 1.1972 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 2.0921 1.5601 -2.1324 33 1 2.9059 3.8840 -2.1325 34 1 5.4587 4.8190 0.4846 35 1 5.1700 5.0801 -1.2523 36 1 4.9462 7.5385 -0.8004 37 1 5.3653 7.2321 0.9021 38 1 6.5553 6.9041 -0.3803 39 1 2.6694 5.6445 -1.8923 40 1 0.7514 8.3720 0.5764 41 1 2.4127 7.8700 0.9715 42 1 2.0911 8.7875 -0.5195 43 1 -0.3511 7.4388 -1.4658 44 1 1.0801 7.6359 -2.5056 45 1 1.1863 5.1792 -2.8250 46 1 -0.2449 4.9821 -1.7854 47 1 -0.9740 2.8677 -4.7106 48 1 2.9029 3.8851 2.1324 49 1 2.0823 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:09 Heat of formation + Delta-G solvation = -27.811993 kcal Electronic energy + Delta-G solvation = -23975.912177 eV Core-core repulsion = 20900.527865 eV Total energy + Delta-G solvation = -3075.384312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85050 -38.72175 -36.28404 -34.87267 -34.19665 -31.90006 -31.76406 -30.87301 -29.55244 -27.10503 -26.26252 -24.10270 -23.76971 -23.23263 -22.07089 -21.08151 -20.81977 -18.53727 -17.61148 -17.04785 -16.55181 -16.19562 -15.97969 -15.72074 -15.22301 -14.80890 -14.59575 -14.54803 -14.40460 -14.24121 -14.09274 -13.81631 -13.54568 -13.40649 -13.12769 -12.99228 -12.85392 -12.71064 -12.51875 -12.39978 -12.25728 -12.19241 -11.99965 -11.77688 -11.72413 -11.57481 -11.54995 -11.48171 -11.26193 -10.89644 -10.52613 -9.77261 -9.41914 -9.24034 -8.17331 -6.27850 0.45587 0.55093 1.37551 1.38019 1.48799 2.40061 2.86320 3.14285 3.31854 3.75275 3.90311 3.98616 4.13041 4.13749 4.19102 4.31826 4.38704 4.43622 4.49004 4.49395 4.58451 4.60405 4.70015 4.73454 4.79059 4.84679 4.99766 5.01193 5.03102 5.05830 5.07684 5.11273 5.18031 5.21885 5.25275 5.27345 5.35683 5.39083 5.47141 5.54425 5.57288 5.63679 5.65922 5.75951 5.78148 5.86603 6.16961 6.27429 6.32617 6.47151 6.87406 7.40194 8.92381 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.006404 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.307767 B = 4371.061803 C = 6537.852670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.094 4.094 4 C -0.125 4.125 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.130 3.870 8 H 0.092 0.908 9 C -0.099 4.099 10 C -0.137 4.137 11 N -0.673 5.673 12 C 0.091 3.909 13 H 0.020 0.980 14 C -0.126 4.126 15 C -0.105 4.105 16 C 0.040 3.960 17 C -0.545 4.545 18 H 0.054 0.946 19 C 0.007 3.993 20 N -0.920 5.920 21 Si 0.956 3.044 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.266 1.266 25 C -0.118 4.118 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.337 0.663 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.000 1.000 46 H -0.025 1.025 47 H 0.260 0.740 48 H 0.143 0.857 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.551 -1.696 13.016 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.094 4.094 4 C -0.143 4.143 5 C -0.133 4.133 6 C -0.123 4.123 7 C 0.019 3.981 8 H 0.110 0.890 9 C -0.137 4.137 10 C -0.194 4.194 11 N -0.306 5.306 12 C -0.019 4.019 13 H 0.038 0.962 14 C -0.184 4.184 15 C -0.143 4.143 16 C 0.003 3.997 17 C -0.583 4.583 18 H 0.072 0.928 19 C -0.192 4.192 20 N -0.560 5.560 21 Si 0.781 3.219 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.191 1.191 25 C -0.136 4.136 26 C -0.139 4.139 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.019 0.981 46 H -0.006 1.006 47 H 0.069 0.931 48 H 0.161 0.839 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.865 -1.254 13.078 16.430 hybrid contribution -1.453 -1.019 -1.443 2.287 sum 8.412 -2.274 11.636 14.537 Atomic orbital electron populations 1.21720 0.95092 1.02250 1.01120 1.20545 0.95803 0.91606 1.03592 1.20134 0.98937 0.97490 0.92824 1.21060 0.99835 0.95378 0.98046 1.20860 0.99903 0.94899 0.97633 1.20830 1.00164 0.98123 0.93175 1.20718 0.94798 0.86624 0.95917 0.89020 1.21431 0.92571 0.98485 1.01254 1.21613 1.00138 0.95756 1.01914 1.60936 1.21623 1.41107 1.06952 1.21464 0.88679 0.96494 0.95281 0.96178 1.21710 1.01334 0.95748 0.99583 1.21671 0.97918 0.98340 0.96341 1.18875 0.94642 0.92602 0.93626 1.21666 1.30551 0.93404 1.12727 0.92766 1.25854 0.97811 0.94959 1.00557 1.70103 1.46270 0.99310 1.40285 0.85585 0.78878 0.77791 0.79620 1.19867 1.20858 1.19090 1.21265 0.99608 0.95117 0.97643 1.21265 0.99796 0.95059 0.97830 0.90488 0.92615 0.95290 0.88735 0.91241 0.87838 0.88391 0.90974 0.93446 0.92580 0.92382 0.92545 0.84154 0.92323 0.91790 0.92262 0.92949 0.92690 0.98146 1.00631 0.93102 0.83885 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.89 71.98 0.71 -3.07 16 2 C -0.08 -1.94 6.07 29.85 0.18 -1.76 16 3 C -0.09 -2.87 5.13 -19.87 -0.10 -2.97 16 4 C -0.12 -4.62 9.70 22.27 0.22 -4.40 16 5 C -0.11 -4.28 9.05 22.27 0.20 -4.08 16 6 C -0.12 -3.84 4.58 -19.87 -0.09 -3.93 16 7 C 0.13 3.66 2.03 44.17 0.09 3.75 16 8 H 0.09 2.36 6.84 -2.39 -0.02 2.35 16 9 C -0.10 -2.43 5.59 30.59 0.17 -2.26 16 10 C -0.14 -2.95 9.85 71.98 0.71 -2.24 16 11 N -0.67 -22.52 5.42 -473.31 -2.56 -25.08 16 12 C 0.09 3.18 2.47 44.92 0.11 3.29 16 13 H 0.02 0.77 7.64 -2.39 -0.02 0.76 16 14 C -0.13 -3.47 9.40 71.98 0.68 -2.79 16 15 C -0.10 -4.46 4.76 30.59 0.15 -4.32 16 16 C 0.04 2.11 4.80 29.84 0.14 2.25 16 17 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 18 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 19 C 0.01 0.39 5.46 84.65 0.46 0.86 16 20 N -0.92 -55.80 13.29 21.45 0.28 -55.52 16 21 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C -0.12 -3.23 9.67 22.27 0.22 -3.02 16 26 C -0.12 -3.26 9.70 22.27 0.22 -3.05 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 31 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 32 H 0.10 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.10 4.03 6.09 -2.91 -0.02 4.01 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.39 7.63 -2.39 -0.02 1.38 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.34 13.24 4.16 -89.70 -0.37 12.86 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.53 7.25 -2.39 -0.02 1.51 16 42 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.00 0.02 5.93 -2.39 -0.01 0.01 16 46 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 47 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.14 3.04 8.04 -2.91 -0.02 3.02 16 49 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -64.29 386.45 4.55 -59.74 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.51 Total: 32.88 kcal Atomic # 6 Polarization: -63.41 SS G_CDS: 4.29 Total: -59.12 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -2.28 Total: -80.60 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.29 4.55 -59.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.931 kcal (2) G-P(sol) polarization free energy of solvation -64.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds