Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 H 1.09001 * 109.47336 * 55.38653 * 3 2 1 5 5 N 1.46910 * 109.47105 * 295.38660 * 3 2 1 6 6 C 1.46894 * 111.00224 * 152.78243 * 5 3 2 7 7 H 1.09003 * 109.47276 * 35.73295 * 6 5 3 8 8 C 1.53002 * 109.47194 * 275.73634 * 6 5 3 9 9 C 1.52998 * 109.47407 * 155.73807 * 6 5 3 10 10 C 1.53006 * 109.46560 * 295.00124 * 9 6 5 11 11 C 1.50695 * 109.46818 * 179.97438 * 10 9 6 12 12 H 1.08001 * 120.00161 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99931 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00117 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00111 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47056 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47439 * 120.00078 * 15 13 11 18 18 H 1.48507 * 109.47007 * 240.00189 * 15 13 11 19 19 C 1.50697 * 109.47177 * 175.39226 * 3 2 1 20 20 C 1.38233 * 120.00449 * 79.72345 * 19 3 2 21 21 C 1.38237 * 120.00060 * 179.78936 * 20 19 3 22 22 C 1.50698 * 119.99963 * 180.27406 * 21 20 19 23 23 C 1.38235 * 119.99941 * 0.43927 * 21 20 19 24 24 C 1.38239 * 120.00174 * 359.81227 * 23 21 20 25 25 C 1.50694 * 119.99887 * 179.97438 * 24 23 21 26 26 C 1.38235 * 119.99868 * 359.97438 * 24 23 21 27 27 H 1.09001 * 109.46787 * 178.22898 * 1 2 3 28 28 H 1.08998 * 109.47223 * 58.22767 * 1 2 3 29 29 H 1.09006 * 109.47571 * 298.22589 * 1 2 3 30 30 H 1.09001 * 109.46942 * 119.99078 * 2 1 3 31 31 H 1.08990 * 109.47162 * 239.99965 * 2 1 3 32 32 H 1.00904 * 110.99388 * 28.82901 * 5 3 2 33 33 H 1.09001 * 109.47328 * 64.87829 * 8 6 5 34 34 H 1.08997 * 109.47086 * 184.87582 * 8 6 5 35 35 H 1.08998 * 109.47134 * 304.87656 * 8 6 5 36 36 H 1.08997 * 109.47111 * 54.99263 * 9 6 5 37 37 H 1.09000 * 109.47403 * 175.00669 * 9 6 5 38 38 H 1.09007 * 109.47170 * 299.99664 * 10 9 6 39 39 H 1.08995 * 109.47560 * 59.99684 * 10 9 6 40 40 H 0.97003 * 120.00126 * 179.97438 * 14 13 11 41 41 H 1.08001 * 119.99488 * 359.97438 * 20 19 3 42 42 H 1.09001 * 109.46857 * 270.16574 * 22 21 20 43 43 H 1.09003 * 109.47367 * 30.16500 * 22 21 20 44 44 H 1.08996 * 109.47427 * 150.16824 * 22 21 20 45 45 H 1.08001 * 119.99685 * 179.83207 * 23 21 20 46 46 H 1.08996 * 109.47413 * 269.97536 * 25 24 23 47 47 H 1.08996 * 109.46947 * 29.98335 * 25 24 23 48 48 H 1.09006 * 109.46513 * 149.97542 * 25 24 23 49 49 H 1.07993 * 120.00183 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9797 0.8458 5 7 1.6432 2.1021 -1.2513 6 6 1.5143 3.5533 -1.0636 7 1 2.2735 3.8977 -0.3613 8 6 0.1245 3.8745 -0.5103 9 6 1.7042 4.2602 -2.4071 10 6 3.1359 4.0414 -2.9006 11 6 3.3228 4.7372 -4.2241 12 1 2.5027 5.2814 -4.6687 13 6 4.5412 4.6800 -4.8671 14 7 5.5403 4.0186 -4.3250 15 14 4.7731 5.5430 -6.5075 16 1 3.5062 6.2118 -6.8984 17 1 5.8514 6.5567 -6.3854 18 1 5.1460 4.5460 -7.5430 19 6 3.5425 1.4441 0.1141 20 6 4.3208 1.1999 -1.0019 21 6 5.6993 1.2057 -0.8980 22 6 6.5478 0.9455 -2.1159 23 6 6.2993 1.4468 0.3238 24 6 5.5210 1.6859 1.4409 25 6 6.1751 1.9482 2.7729 26 6 4.1426 1.6845 1.3362 27 1 -0.3633 -1.0272 -0.0318 28 1 -0.3633 0.5411 -0.8736 29 1 -0.3634 0.4860 0.9055 30 1 1.8933 -0.5137 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 0.7882 1.7069 -1.6130 33 1 0.0210 3.4428 0.4852 34 1 -0.0026 4.9555 -0.4525 35 1 -0.6350 3.4541 -1.1694 36 1 1.0028 3.8521 -3.1348 37 1 1.5212 5.3278 -2.2850 38 1 3.8374 4.4496 -2.1729 39 1 3.3191 2.9739 -3.0226 40 1 6.3973 3.9780 -4.7775 41 1 3.8519 1.0074 -1.9555 42 1 6.7385 -0.1241 -2.2040 43 1 6.0239 1.2956 -3.0053 44 1 7.4947 1.4766 -2.0193 45 1 7.3762 1.4486 0.4055 46 1 6.3179 1.0047 3.2997 47 1 7.1419 2.4262 2.6150 48 1 5.5386 2.6036 3.3675 49 1 3.5345 1.8709 2.2089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -13.336140 kcal Electronic energy + Delta-G solvation = -24146.911093 eV Core-core repulsion = 21072.154501 eV Total energy + Delta-G solvation = -3074.756591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45309 -37.46702 -34.60208 -32.99719 -32.67503 -31.45187 -29.99483 -28.55052 -26.91976 -26.14038 -25.39278 -24.81430 -21.82266 -21.37685 -20.20796 -19.69005 -19.37787 -16.10559 -15.84200 -15.79932 -15.05881 -14.69799 -14.42404 -14.27043 -13.72604 -13.57935 -13.20386 -12.94766 -12.81367 -12.69161 -12.50757 -12.33940 -12.27421 -12.14647 -11.94280 -11.75230 -11.42848 -11.31594 -11.25201 -11.09480 -10.90809 -10.80622 -10.65772 -10.46102 -10.37992 -10.26784 -10.02964 -9.55239 -9.14105 -8.81311 -8.17391 -8.06704 -7.94060 -7.81610 -5.82524 -3.82750 1.89119 1.96486 3.38292 3.45962 3.49944 4.22865 4.53224 4.58192 4.97592 5.12783 5.16031 5.21062 5.31101 5.42895 5.46395 5.52376 5.58567 5.62283 5.64554 5.71626 5.73782 5.76073 5.83770 5.94191 5.95771 6.03886 6.10264 6.14692 6.17720 6.21337 6.26201 6.32303 6.34425 6.47605 6.53325 6.70624 6.77466 6.90161 6.95780 7.01844 7.16887 7.29229 7.40344 7.60690 7.65234 7.91360 7.93312 8.16657 8.31270 8.64685 9.25671 9.78857 11.27398 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.005969 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.562703 B = 4689.418596 C = 6215.955480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.130 3.870 4 H 0.046 0.954 5 N -0.665 5.665 6 C 0.086 3.914 7 H 0.071 0.929 8 C -0.179 4.179 9 C -0.099 4.099 10 C 0.034 3.966 11 C -0.517 4.517 12 H 0.048 0.952 13 C 0.059 3.941 14 N -0.887 5.887 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.069 4.069 20 C -0.069 4.069 21 C -0.071 4.071 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.097 4.097 25 C -0.107 4.107 26 C -0.132 4.132 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.336 0.664 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.005 0.995 39 H 0.034 0.966 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -8.565 12.656 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.020 3.980 4 H 0.063 0.937 5 N -0.297 5.297 6 C -0.023 4.023 7 H 0.089 0.911 8 C -0.239 4.239 9 C -0.137 4.137 10 C -0.003 4.003 11 C -0.556 4.556 12 H 0.067 0.933 13 C -0.142 4.142 14 N -0.527 5.527 15 Si 0.710 3.290 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.070 4.070 20 C -0.088 4.088 21 C -0.071 4.071 22 C -0.169 4.169 23 C -0.145 4.145 24 C -0.097 4.097 25 C -0.164 4.164 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.157 0.843 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.149 0.851 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.129 0.871 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.911 -8.570 12.376 15.553 hybrid contribution -0.576 0.768 -0.423 1.049 sum -4.487 -7.802 11.952 14.962 Atomic orbital electron populations 1.21838 0.96063 1.01642 1.01633 1.21696 0.95267 0.96153 1.02875 1.20367 0.91583 0.94019 0.92065 0.93659 1.60535 1.38821 1.03496 1.26826 1.21726 0.94208 0.87427 0.98987 0.91100 1.22545 0.99262 1.01977 1.00070 1.21629 1.01733 0.97030 0.93278 1.18966 0.88890 0.98026 0.94386 1.21386 0.96590 1.32018 1.05568 0.93344 1.24946 0.96306 0.95704 0.97210 1.69987 1.02195 1.42229 1.38283 0.86714 0.77879 0.79521 0.84874 1.20047 1.21323 1.21243 1.19712 0.94702 0.99466 0.93107 1.20910 0.92154 0.97169 0.98531 1.19953 0.94453 0.97983 0.94693 1.20767 0.99309 1.00045 0.96772 1.20814 0.98891 1.02515 0.92292 1.19657 0.93555 1.01276 0.95247 1.20701 1.00344 1.01152 0.94218 1.20689 0.93870 1.03612 0.96881 0.92597 0.92449 0.93065 0.91597 0.90802 0.84342 0.93826 0.92365 0.92947 0.93662 0.93803 0.97642 0.94730 0.93538 0.85117 0.92608 0.89528 0.92240 0.87083 0.91944 0.91986 0.92137 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.77 37.16 0.36 -1.17 16 2 C -0.12 -1.44 5.49 -26.73 -0.15 -1.59 16 3 C 0.13 1.84 2.05 -68.86 -0.14 1.70 16 4 H 0.05 0.63 6.96 -51.93 -0.36 0.27 16 5 N -0.66 -10.55 4.77 -100.95 -0.48 -11.03 16 6 C 0.09 1.48 2.40 -67.72 -0.16 1.32 16 7 H 0.07 1.35 7.72 -51.93 -0.40 0.95 16 8 C -0.18 -2.48 9.16 37.16 0.34 -2.14 16 9 C -0.10 -2.07 4.83 -26.73 -0.13 -2.20 16 10 C 0.03 0.90 4.86 -27.88 -0.14 0.76 16 11 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 12 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 15 Si 0.88 22.01 29.54 -169.99 -5.02 16.99 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C -0.07 -1.13 4.72 -104.62 -0.49 -1.63 16 20 C -0.07 -1.28 8.87 -39.58 -0.35 -1.63 16 21 C -0.07 -1.29 5.88 -104.62 -0.62 -1.90 16 22 C -0.11 -1.97 10.01 36.00 0.36 -1.61 16 23 C -0.13 -2.09 9.36 -39.58 -0.37 -2.47 16 24 C -0.10 -1.48 5.88 -104.63 -0.62 -2.10 16 25 C -0.11 -1.26 10.01 36.00 0.36 -0.90 16 26 C -0.13 -2.03 9.33 -39.58 -0.37 -2.40 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.58 6.37 -51.93 -0.33 0.25 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.34 4.83 6.11 -39.29 -0.24 4.59 16 33 H 0.04 0.54 7.47 -51.93 -0.39 0.16 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 39 H 0.03 0.95 7.27 -51.93 -0.38 0.57 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 41 H 0.13 2.61 7.36 -52.49 -0.39 2.22 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 44 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 48 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 49 H 0.11 1.44 8.04 -52.49 -0.42 1.02 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -29.94 389.30 -10.61 -40.55 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -9.20 Total: 4.67 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: -2.52 Total: -31.54 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.26 Total: -36.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.94 -10.61 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.217 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds