Wall clock time and date at job start Tue Mar 31 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 H 1.09001 * 109.47336 * 55.38653 * 3 2 1 5 5 N 1.46910 * 109.47105 * 295.38660 * 3 2 1 6 6 C 1.46894 * 111.00224 * 152.78243 * 5 3 2 7 7 H 1.09003 * 109.47276 * 35.73295 * 6 5 3 8 8 C 1.53002 * 109.47194 * 275.73634 * 6 5 3 9 9 C 1.52998 * 109.47407 * 155.73807 * 6 5 3 10 10 C 1.53006 * 109.46560 * 295.00124 * 9 6 5 11 11 C 1.50695 * 109.46818 * 179.97438 * 10 9 6 12 12 H 1.08001 * 120.00161 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99931 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00117 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00111 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47056 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47439 * 120.00078 * 15 13 11 18 18 H 1.48507 * 109.47007 * 240.00189 * 15 13 11 19 19 C 1.50697 * 109.47177 * 175.39226 * 3 2 1 20 20 C 1.38233 * 120.00449 * 79.72345 * 19 3 2 21 21 C 1.38237 * 120.00060 * 179.78936 * 20 19 3 22 22 C 1.50698 * 119.99963 * 180.27406 * 21 20 19 23 23 C 1.38235 * 119.99941 * 0.43927 * 21 20 19 24 24 C 1.38239 * 120.00174 * 359.81227 * 23 21 20 25 25 C 1.50694 * 119.99887 * 179.97438 * 24 23 21 26 26 C 1.38235 * 119.99868 * 359.97438 * 24 23 21 27 27 H 1.09001 * 109.46787 * 178.22898 * 1 2 3 28 28 H 1.08998 * 109.47223 * 58.22767 * 1 2 3 29 29 H 1.09006 * 109.47571 * 298.22589 * 1 2 3 30 30 H 1.09001 * 109.46942 * 119.99078 * 2 1 3 31 31 H 1.08990 * 109.47162 * 239.99965 * 2 1 3 32 32 H 1.00904 * 110.99388 * 28.82901 * 5 3 2 33 33 H 1.09001 * 109.47328 * 64.87829 * 8 6 5 34 34 H 1.08997 * 109.47086 * 184.87582 * 8 6 5 35 35 H 1.08998 * 109.47134 * 304.87656 * 8 6 5 36 36 H 1.08997 * 109.47111 * 54.99263 * 9 6 5 37 37 H 1.09000 * 109.47403 * 175.00669 * 9 6 5 38 38 H 1.09007 * 109.47170 * 299.99664 * 10 9 6 39 39 H 1.08995 * 109.47560 * 59.99684 * 10 9 6 40 40 H 0.97003 * 120.00126 * 179.97438 * 14 13 11 41 41 H 1.08001 * 119.99488 * 359.97438 * 20 19 3 42 42 H 1.09001 * 109.46857 * 270.16574 * 22 21 20 43 43 H 1.09003 * 109.47367 * 30.16500 * 22 21 20 44 44 H 1.08996 * 109.47427 * 150.16824 * 22 21 20 45 45 H 1.08001 * 119.99685 * 179.83207 * 23 21 20 46 46 H 1.08996 * 109.47413 * 269.97536 * 25 24 23 47 47 H 1.08996 * 109.46947 * 29.98335 * 25 24 23 48 48 H 1.09006 * 109.46513 * 149.97542 * 25 24 23 49 49 H 1.07993 * 120.00183 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9797 0.8458 5 7 1.6432 2.1021 -1.2513 6 6 1.5143 3.5533 -1.0636 7 1 2.2735 3.8977 -0.3613 8 6 0.1245 3.8745 -0.5103 9 6 1.7042 4.2602 -2.4071 10 6 3.1359 4.0414 -2.9006 11 6 3.3228 4.7372 -4.2241 12 1 2.5027 5.2814 -4.6687 13 6 4.5412 4.6800 -4.8671 14 7 5.5403 4.0186 -4.3250 15 14 4.7731 5.5430 -6.5075 16 1 3.5062 6.2118 -6.8984 17 1 5.8514 6.5567 -6.3854 18 1 5.1460 4.5460 -7.5430 19 6 3.5425 1.4441 0.1141 20 6 4.3208 1.1999 -1.0019 21 6 5.6993 1.2057 -0.8980 22 6 6.5478 0.9455 -2.1159 23 6 6.2993 1.4468 0.3238 24 6 5.5210 1.6859 1.4409 25 6 6.1751 1.9482 2.7729 26 6 4.1426 1.6845 1.3362 27 1 -0.3633 -1.0272 -0.0318 28 1 -0.3633 0.5411 -0.8736 29 1 -0.3634 0.4860 0.9055 30 1 1.8933 -0.5137 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 0.7882 1.7069 -1.6130 33 1 0.0210 3.4428 0.4852 34 1 -0.0026 4.9555 -0.4525 35 1 -0.6350 3.4541 -1.1694 36 1 1.0028 3.8521 -3.1348 37 1 1.5212 5.3278 -2.2850 38 1 3.8374 4.4496 -2.1729 39 1 3.3191 2.9739 -3.0226 40 1 6.3973 3.9780 -4.7775 41 1 3.8519 1.0074 -1.9555 42 1 6.7385 -0.1241 -2.2040 43 1 6.0239 1.2956 -3.0053 44 1 7.4947 1.4766 -2.0193 45 1 7.3762 1.4486 0.4055 46 1 6.3179 1.0047 3.2997 47 1 7.1419 2.4262 2.6150 48 1 5.5386 2.6036 3.3675 49 1 3.5345 1.8709 2.2089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:57 Heat of formation + Delta-G solvation = -27.523744 kcal Electronic energy + Delta-G solvation = -24147.526313 eV Core-core repulsion = 21072.154501 eV Total energy + Delta-G solvation = -3075.371812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70656 -38.76340 -36.10421 -34.64557 -34.23699 -32.57464 -31.75931 -29.85616 -28.14888 -27.39861 -26.97010 -26.29800 -23.20662 -22.87734 -21.51219 -21.27887 -20.58491 -18.30715 -17.12787 -17.09044 -16.52679 -16.22046 -15.91359 -15.58174 -14.89344 -14.75570 -14.64200 -14.36096 -14.05815 -13.93864 -13.91564 -13.67500 -13.64808 -13.37352 -13.27872 -13.08219 -12.87641 -12.86529 -12.65160 -12.58984 -12.35036 -12.30592 -12.05938 -11.81731 -11.70056 -11.53390 -11.47569 -11.43294 -11.14356 -10.87546 -10.41767 -9.34802 -9.24760 -9.07484 -8.05876 -6.15797 0.59520 0.66848 1.39215 1.39826 1.51936 2.45777 2.93804 3.24299 3.32523 3.86550 4.04927 4.05163 4.09570 4.20137 4.26207 4.36157 4.40184 4.44472 4.49335 4.59994 4.64272 4.65393 4.78077 4.80020 4.85985 4.88936 4.89769 4.95607 4.98334 5.07347 5.09830 5.10956 5.14537 5.17685 5.28117 5.32496 5.44312 5.45131 5.47732 5.53571 5.65390 5.77513 5.81396 5.92928 5.98633 6.12637 6.31347 6.39847 6.41961 6.74272 7.02230 7.50349 9.03121 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.005969 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.562703 B = 4689.418596 C = 6215.955480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.134 3.866 4 H 0.058 0.942 5 N -0.681 5.681 6 C 0.097 3.903 7 H 0.049 0.951 8 C -0.168 4.168 9 C -0.091 4.091 10 C 0.051 3.949 11 C -0.545 4.545 12 H 0.049 0.951 13 C 0.007 3.993 14 N -0.914 5.914 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.279 1.279 19 C -0.074 4.074 20 C -0.094 4.094 21 C -0.096 4.096 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.096 4.096 25 C -0.105 4.105 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.345 0.655 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.042 0.958 38 H -0.035 1.035 39 H 0.012 0.988 40 H 0.257 0.743 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 -8.551 14.254 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.025 3.975 4 H 0.076 0.924 5 N -0.315 5.315 6 C -0.013 4.013 7 H 0.067 0.933 8 C -0.227 4.227 9 C -0.129 4.129 10 C 0.014 3.986 11 C -0.583 4.583 12 H 0.067 0.933 13 C -0.192 4.192 14 N -0.554 5.554 15 Si 0.777 3.223 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.205 1.205 19 C -0.074 4.074 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.159 4.159 23 C -0.159 4.159 24 C -0.097 4.097 25 C -0.161 4.161 26 C -0.156 4.156 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.061 0.939 38 H -0.017 1.017 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.196 -8.561 13.976 17.194 hybrid contribution -0.119 0.745 -0.915 1.186 sum -5.315 -7.816 13.061 16.123 Atomic orbital electron populations 1.21799 0.94139 1.02664 1.02021 1.21629 0.96828 0.94234 1.02596 1.20400 0.90206 0.95471 0.91439 0.92406 1.60356 1.39684 1.02971 1.28454 1.21431 0.95977 0.87865 0.96034 0.93310 1.22395 0.96671 1.02416 1.01168 1.21479 0.98112 0.97621 0.95662 1.18704 0.91278 0.95892 0.92709 1.21781 0.96987 1.32696 1.06849 0.93321 1.25809 0.96011 0.96334 1.01020 1.70135 1.02574 1.42884 1.39770 0.85613 0.78057 0.78424 0.80178 1.19145 1.20755 1.20531 1.20022 0.96003 0.98518 0.92906 1.20766 0.92686 0.99592 0.98250 1.20140 0.94617 0.99222 0.95625 1.20643 0.98709 1.01424 0.95169 1.21034 0.99925 1.02835 0.92085 1.20129 0.93727 0.99349 0.96448 1.20758 1.00487 1.02564 0.92306 1.21036 0.94428 1.02957 0.97227 0.91279 0.92727 0.91951 0.90634 0.92347 0.83265 0.91752 0.92112 0.91693 0.93414 0.93938 1.01652 0.96957 0.93368 0.88050 0.90287 0.93571 0.92045 0.85590 0.89900 0.91446 0.90809 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.77 71.98 0.70 -1.89 16 2 C -0.11 -2.58 5.49 30.59 0.17 -2.42 16 3 C 0.13 3.73 2.05 44.17 0.09 3.82 16 4 H 0.06 1.47 6.96 -2.39 -0.02 1.46 16 5 N -0.68 -21.79 4.77 -473.31 -2.26 -24.04 16 6 C 0.10 3.31 2.40 44.92 0.11 3.42 16 7 H 0.05 1.88 7.72 -2.39 -0.02 1.86 16 8 C -0.17 -4.24 9.16 71.98 0.66 -3.58 16 9 C -0.09 -3.89 4.83 30.60 0.15 -3.74 16 10 C 0.05 2.82 4.86 29.85 0.15 2.96 16 11 C -0.54 -32.33 9.11 25.60 0.23 -32.10 16 12 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 13 C 0.01 0.40 5.46 84.66 0.46 0.86 16 14 N -0.91 -56.22 13.29 21.45 0.28 -55.93 16 15 Si 0.95 45.91 29.54 68.60 2.03 47.94 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 C -0.07 -2.45 4.72 -19.86 -0.09 -2.54 16 20 C -0.09 -3.72 8.87 22.27 0.20 -3.53 16 21 C -0.10 -3.69 5.88 -19.87 -0.12 -3.81 16 22 C -0.10 -3.87 10.01 71.24 0.71 -3.16 16 23 C -0.14 -4.69 9.36 22.27 0.21 -4.48 16 24 C -0.10 -2.83 5.88 -19.87 -0.12 -2.95 16 25 C -0.10 -2.18 10.01 71.23 0.71 -1.47 16 26 C -0.14 -4.10 9.33 22.27 0.21 -3.89 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.98 6.37 -2.39 -0.02 0.97 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.35 9.73 6.11 -89.69 -0.55 9.18 16 33 H 0.06 1.39 7.47 -2.39 -0.02 1.37 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H -0.03 -2.17 8.14 -2.38 -0.02 -2.19 16 39 H 0.01 0.71 7.27 -2.39 -0.02 0.69 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.10 4.49 7.36 -2.91 -0.02 4.47 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 44 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 45 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 48 H 0.07 1.36 8.09 -2.38 -0.02 1.34 16 49 H 0.13 3.21 8.04 -2.91 -0.02 3.19 16 Total: -1.00 -67.92 389.30 4.82 -63.10 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.34 Total: 27.44 kcal Atomic # 6 Polarization: -62.93 SS G_CDS: 4.43 Total: -58.50 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.97 Total: -79.98 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.92 4.82 -63.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.576 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds