Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99619 * 2 1 4 4 C 1.38216 * 119.99710 * 180.02562 * 3 2 1 5 5 C 1.38267 * 120.00057 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99910 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00042 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46961 * 160.00380 * 7 6 5 9 9 N 1.46898 * 109.47026 * 39.99965 * 7 6 5 10 10 C 1.46893 * 111.00049 * 152.77799 * 9 7 6 11 11 H 1.09001 * 109.47277 * 35.29077 * 10 9 7 12 12 C 1.53011 * 109.47002 * 275.29569 * 10 9 7 13 13 C 1.52997 * 109.47345 * 155.29455 * 10 9 7 14 14 C 1.52998 * 109.47000 * 294.99462 * 13 10 9 15 15 C 1.50701 * 109.46648 * 179.97438 * 14 13 10 16 16 H 1.07995 * 120.00355 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99771 * 179.72834 * 15 14 13 18 18 N 1.31515 * 119.99725 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00224 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47149 * 119.99896 * 19 17 15 22 22 H 1.48502 * 109.47031 * 239.99828 * 19 17 15 23 23 C 1.53004 * 109.46730 * 279.99953 * 7 6 5 24 24 C 1.53002 * 109.47263 * 298.43962 * 23 7 6 25 25 C 1.53000 * 109.47255 * 58.44362 * 23 7 6 26 26 C 1.38214 * 120.00126 * 180.27836 * 2 1 3 27 27 H 1.08995 * 109.47490 * 89.99797 * 1 2 3 28 28 H 1.09003 * 109.46587 * 209.99906 * 1 2 3 29 29 H 1.09003 * 109.47160 * 329.99568 * 1 2 3 30 30 H 1.07995 * 120.00309 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00578 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.00046 * 179.97438 * 5 4 3 33 33 H 1.00904 * 110.99768 * 28.81860 * 9 7 6 34 34 H 1.09001 * 109.46703 * 299.99860 * 12 10 9 35 35 H 1.09004 * 109.46711 * 59.99720 * 12 10 9 36 36 H 1.08992 * 109.47376 * 179.97438 * 12 10 9 37 37 H 1.09003 * 109.47093 * 174.99749 * 13 10 9 38 38 H 1.09000 * 109.47292 * 55.00007 * 13 10 9 39 39 H 1.08998 * 109.46558 * 60.00418 * 14 13 10 40 40 H 1.08991 * 109.47446 * 299.99770 * 14 13 10 41 41 H 0.97004 * 120.00371 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46473 * 178.44299 * 23 7 6 43 43 H 1.08999 * 109.46697 * 58.07624 * 24 23 7 44 44 H 1.09001 * 109.46900 * 178.07552 * 24 23 7 45 45 H 1.09000 * 109.47045 * 298.07085 * 24 23 7 46 46 H 1.08995 * 109.46967 * 59.99705 * 25 23 7 47 47 H 1.09005 * 109.47018 * 179.97438 * 25 23 7 48 48 H 1.09003 * 109.47059 * 299.99890 * 25 23 7 49 49 H 1.08003 * 119.99635 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 3.5807 -1.1970 -0.0005 7 6 4.3342 -2.5021 -0.0011 8 1 3.6797 -3.2996 0.3504 9 7 5.4982 -2.3958 0.8887 10 6 5.8714 -3.7108 1.4266 11 1 5.6953 -4.4759 0.6705 12 6 5.0259 -4.0138 2.6653 13 6 7.3527 -3.7035 1.8094 14 6 8.2039 -3.5248 0.5507 15 6 9.6629 -3.5170 0.9280 16 1 9.9539 -3.6288 1.9620 17 6 10.6265 -3.3733 -0.0477 18 7 10.2722 -3.2425 -1.3074 19 14 12.4350 -3.3643 0.4198 20 1 12.5671 -3.5260 1.8900 21 1 13.1291 -4.4838 -0.2661 22 1 13.0466 -2.0756 0.0071 23 6 4.8056 -2.8181 -1.4220 24 6 3.5913 -2.9671 -2.3409 25 6 5.6930 -1.6799 -1.9300 26 6 2.1981 -1.1969 -0.0058 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 -0.0010 32 1 5.3518 0.0000 -0.0014 33 1 5.3256 -1.7364 1.6327 34 1 5.2020 -3.2486 3.4214 35 1 3.9706 -4.0189 2.3924 36 1 5.3025 -4.9897 3.0642 37 1 7.6084 -4.6479 2.2899 38 1 7.5458 -2.8814 2.4985 39 1 7.9482 -2.5804 0.0704 40 1 8.0108 -4.3469 -0.1382 41 1 10.9501 -3.1410 -1.9939 42 1 5.3742 -3.7480 -1.4177 43 1 3.0040 -2.0491 -2.3186 44 1 3.9280 -3.1584 -3.3598 45 1 2.9769 -3.8000 -1.9989 46 1 6.5580 -1.5738 -1.2754 47 1 6.0291 -1.9054 -2.9421 48 1 5.1243 -0.7500 -1.9343 49 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = -8.750990 kcal Electronic energy + Delta-G solvation = -23924.521067 eV Core-core repulsion = 20849.963302 eV Total energy + Delta-G solvation = -3074.557764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97403 -37.56662 -35.13748 -32.93718 -32.59076 -31.27282 -30.12919 -28.72774 -27.20642 -26.30360 -25.26670 -24.50237 -22.32225 -21.32764 -21.10962 -19.68971 -18.72705 -16.45065 -16.07577 -15.67311 -15.44318 -14.96583 -14.46054 -14.35903 -14.10536 -13.74438 -13.61475 -13.20164 -12.99296 -12.77040 -12.61179 -12.35485 -12.26950 -12.11536 -11.91544 -11.72355 -11.57532 -11.38014 -11.14635 -11.11401 -10.88278 -10.83001 -10.64088 -10.45252 -10.39245 -10.10192 -10.02498 -9.55310 -9.16148 -8.85501 -8.70260 -8.45745 -8.19608 -7.81713 -5.85676 -3.86162 1.42216 1.45555 3.37635 3.45183 3.49176 3.81192 4.46369 4.56544 4.75876 4.84065 4.96536 5.17140 5.24572 5.33678 5.36909 5.44171 5.44449 5.49829 5.55642 5.57607 5.61829 5.67472 5.71926 5.75705 5.80095 5.99238 6.08056 6.09905 6.17028 6.20867 6.29292 6.31371 6.35475 6.47264 6.56301 6.60430 6.62312 6.67487 6.77791 6.80556 6.94527 7.09823 7.12343 7.36214 7.58794 7.87307 7.89719 8.12324 8.28313 8.61554 9.22946 9.76147 11.24999 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.003843 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.183968 B = 7285.033041 C = 7549.566056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.072 4.072 7 C 0.133 3.867 8 H 0.045 0.955 9 N -0.662 5.662 10 C 0.084 3.916 11 H 0.072 0.928 12 C -0.180 4.180 13 C -0.098 4.098 14 C 0.031 3.969 15 C -0.517 4.517 16 H 0.050 0.950 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.884 3.116 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.286 1.286 23 C -0.077 4.077 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.116 4.116 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.336 0.664 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.006 0.994 41 H 0.256 0.744 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.046 0.954 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.675 5.459 1.836 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.119 4.119 6 C -0.072 4.072 7 C 0.023 3.977 8 H 0.062 0.938 9 N -0.292 5.292 10 C -0.025 4.025 11 H 0.090 0.910 12 C -0.239 4.239 13 C -0.136 4.136 14 C -0.006 4.006 15 C -0.555 4.555 16 H 0.068 0.932 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.713 3.287 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.212 1.212 23 C -0.096 4.096 24 C -0.205 4.205 25 C -0.199 4.199 26 C -0.134 4.134 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.136 5.446 1.158 19.929 hybrid contribution 0.346 -0.181 0.793 0.884 sum -18.790 5.265 1.951 19.611 Atomic orbital electron populations 1.20752 0.91635 1.02392 1.02029 1.19803 0.95683 0.93211 1.00826 1.20962 0.94378 0.97143 1.02013 1.21173 0.94124 0.98210 1.00418 1.21263 1.01151 0.91343 0.98153 1.19962 0.93144 0.95292 0.98847 1.20494 0.90046 0.92422 0.94733 0.93760 1.60613 1.35884 1.09878 1.22840 1.21770 0.96637 0.90164 0.93947 0.91015 1.22541 0.99488 1.02030 0.99848 1.21618 0.91527 0.99533 1.00889 1.19000 0.92382 0.97799 0.91415 1.21393 0.92164 1.48825 0.93153 0.93201 1.24980 0.98517 0.95787 0.95096 1.69985 1.32841 1.50701 0.99715 0.86667 0.86184 0.77430 0.78459 1.19947 1.21253 1.21180 1.21003 0.95904 1.00304 0.92394 1.21895 0.98091 1.01026 0.99527 1.21873 1.00444 0.96815 1.00735 1.20872 0.93591 0.97264 1.01696 0.91474 0.91841 0.91850 0.86706 0.86266 0.84491 0.84488 0.92852 0.93847 0.92374 0.93705 0.93557 0.94685 0.97566 0.93391 0.90656 0.92776 0.92814 0.93555 0.89942 0.93930 0.93463 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.10 -1.03 5.88 -104.62 -0.62 -1.64 16 3 C -0.13 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 5 C -0.10 -1.33 6.69 -39.58 -0.26 -1.59 16 6 C -0.07 -0.93 3.59 -104.62 -0.38 -1.31 16 7 C 0.13 1.85 1.90 -68.86 -0.13 1.72 16 8 H 0.04 0.61 6.96 -51.93 -0.36 0.25 16 9 N -0.66 -10.32 4.23 -100.96 -0.43 -10.75 16 10 C 0.08 1.40 2.40 -67.71 -0.16 1.23 16 11 H 0.07 1.25 7.27 -51.93 -0.38 0.87 16 12 C -0.18 -2.47 9.15 37.16 0.34 -2.13 16 13 C -0.10 -2.00 4.83 -26.73 -0.13 -2.13 16 14 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 15 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 19 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C -0.08 -1.16 2.84 -90.62 -0.26 -1.42 16 24 C -0.15 -1.90 8.88 37.16 0.33 -1.57 16 25 C -0.14 -2.35 7.90 37.16 0.29 -2.06 16 26 C -0.12 -1.36 8.30 -39.58 -0.33 -1.68 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.14 1.97 6.90 -52.49 -0.36 1.60 16 33 H 0.34 5.00 7.65 -39.29 -0.30 4.70 16 34 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.04 0.54 7.43 -51.93 -0.39 0.16 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.03 0.95 6.93 -51.93 -0.36 0.59 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 43 H 0.05 0.68 6.53 -51.93 -0.34 0.34 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.62 6.80 -51.93 -0.35 1.27 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.72 5.61 -51.93 -0.29 0.43 16 49 H 0.12 1.22 8.04 -52.48 -0.42 0.80 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -29.79 379.21 -10.24 -40.03 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.98 Total: 3.87 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -2.27 Total: -29.61 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.31 Total: -37.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.79 -10.24 -40.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.282 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds