Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99619 * 2 1 4 4 C 1.38216 * 119.99710 * 180.02562 * 3 2 1 5 5 C 1.38267 * 120.00057 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99910 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00042 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46961 * 160.00380 * 7 6 5 9 9 N 1.46898 * 109.47026 * 39.99965 * 7 6 5 10 10 C 1.46893 * 111.00049 * 152.77799 * 9 7 6 11 11 H 1.09001 * 109.47277 * 35.29077 * 10 9 7 12 12 C 1.53011 * 109.47002 * 275.29569 * 10 9 7 13 13 C 1.52997 * 109.47345 * 155.29455 * 10 9 7 14 14 C 1.52998 * 109.47000 * 294.99462 * 13 10 9 15 15 C 1.50701 * 109.46648 * 179.97438 * 14 13 10 16 16 H 1.07995 * 120.00355 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99771 * 179.72834 * 15 14 13 18 18 N 1.31515 * 119.99725 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00224 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47149 * 119.99896 * 19 17 15 22 22 H 1.48502 * 109.47031 * 239.99828 * 19 17 15 23 23 C 1.53004 * 109.46730 * 279.99953 * 7 6 5 24 24 C 1.53002 * 109.47263 * 298.43962 * 23 7 6 25 25 C 1.53000 * 109.47255 * 58.44362 * 23 7 6 26 26 C 1.38214 * 120.00126 * 180.27836 * 2 1 3 27 27 H 1.08995 * 109.47490 * 89.99797 * 1 2 3 28 28 H 1.09003 * 109.46587 * 209.99906 * 1 2 3 29 29 H 1.09003 * 109.47160 * 329.99568 * 1 2 3 30 30 H 1.07995 * 120.00309 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00578 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.00046 * 179.97438 * 5 4 3 33 33 H 1.00904 * 110.99768 * 28.81860 * 9 7 6 34 34 H 1.09001 * 109.46703 * 299.99860 * 12 10 9 35 35 H 1.09004 * 109.46711 * 59.99720 * 12 10 9 36 36 H 1.08992 * 109.47376 * 179.97438 * 12 10 9 37 37 H 1.09003 * 109.47093 * 174.99749 * 13 10 9 38 38 H 1.09000 * 109.47292 * 55.00007 * 13 10 9 39 39 H 1.08998 * 109.46558 * 60.00418 * 14 13 10 40 40 H 1.08991 * 109.47446 * 299.99770 * 14 13 10 41 41 H 0.97004 * 120.00371 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46473 * 178.44299 * 23 7 6 43 43 H 1.08999 * 109.46697 * 58.07624 * 24 23 7 44 44 H 1.09001 * 109.46900 * 178.07552 * 24 23 7 45 45 H 1.09000 * 109.47045 * 298.07085 * 24 23 7 46 46 H 1.08995 * 109.46967 * 59.99705 * 25 23 7 47 47 H 1.09005 * 109.47018 * 179.97438 * 25 23 7 48 48 H 1.09003 * 109.47059 * 299.99890 * 25 23 7 49 49 H 1.08003 * 119.99635 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 3.5807 -1.1970 -0.0005 7 6 4.3342 -2.5021 -0.0011 8 1 3.6797 -3.2996 0.3504 9 7 5.4982 -2.3958 0.8887 10 6 5.8714 -3.7108 1.4266 11 1 5.6953 -4.4759 0.6705 12 6 5.0259 -4.0138 2.6653 13 6 7.3527 -3.7035 1.8094 14 6 8.2039 -3.5248 0.5507 15 6 9.6629 -3.5170 0.9280 16 1 9.9539 -3.6288 1.9620 17 6 10.6265 -3.3733 -0.0477 18 7 10.2722 -3.2425 -1.3074 19 14 12.4350 -3.3643 0.4198 20 1 12.5671 -3.5260 1.8900 21 1 13.1291 -4.4838 -0.2661 22 1 13.0466 -2.0756 0.0071 23 6 4.8056 -2.8181 -1.4220 24 6 3.5913 -2.9671 -2.3409 25 6 5.6930 -1.6799 -1.9300 26 6 2.1981 -1.1969 -0.0058 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 -0.0010 32 1 5.3518 0.0000 -0.0014 33 1 5.3256 -1.7364 1.6327 34 1 5.2020 -3.2486 3.4214 35 1 3.9706 -4.0189 2.3924 36 1 5.3025 -4.9897 3.0642 37 1 7.6084 -4.6479 2.2899 38 1 7.5458 -2.8814 2.4985 39 1 7.9482 -2.5804 0.0704 40 1 8.0108 -4.3469 -0.1382 41 1 10.9501 -3.1410 -1.9939 42 1 5.3742 -3.7480 -1.4177 43 1 3.0040 -2.0491 -2.3186 44 1 3.9280 -3.1584 -3.3598 45 1 2.9769 -3.8000 -1.9989 46 1 6.5580 -1.5738 -1.2754 47 1 6.0291 -1.9054 -2.9421 48 1 5.1243 -0.7500 -1.9343 49 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = -22.929466 kcal Electronic energy + Delta-G solvation = -23925.135892 eV Core-core repulsion = 20849.963302 eV Total energy + Delta-G solvation = -3075.172589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98632 -38.73265 -36.53005 -34.97082 -33.46713 -32.60326 -31.56694 -30.07960 -28.24953 -27.29663 -27.00413 -25.85185 -23.35069 -23.06800 -22.13652 -21.18805 -19.88101 -18.34401 -17.42350 -16.79994 -16.58297 -16.41496 -16.11282 -15.47056 -15.21985 -14.97654 -14.52655 -14.50372 -14.31333 -14.04151 -13.88129 -13.72093 -13.50571 -13.18927 -13.07848 -12.91001 -12.86727 -12.78185 -12.68088 -12.59582 -12.31287 -12.26120 -11.87991 -11.83552 -11.75123 -11.62897 -11.49292 -11.15320 -11.14648 -10.90395 -10.44765 -9.61925 -9.36885 -9.06908 -8.10772 -6.20348 0.50915 0.55934 1.39481 1.39865 1.52678 2.44652 2.89922 3.21099 3.28186 3.71608 4.04160 4.08491 4.10871 4.16304 4.20812 4.34336 4.34848 4.43508 4.52153 4.56909 4.58920 4.71878 4.79417 4.83862 4.85085 4.88376 4.90239 4.99538 5.04982 5.07111 5.11441 5.11935 5.15252 5.20438 5.29273 5.34400 5.37257 5.50161 5.51998 5.60191 5.66065 5.68529 5.74874 5.77712 5.95350 6.11316 6.20403 6.36879 6.39098 6.67211 6.99797 7.46955 8.99869 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.003843 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.183968 B = 7285.033041 C = 7549.566056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.127 4.127 5 C -0.119 4.119 6 C -0.078 4.078 7 C 0.142 3.858 8 H 0.055 0.945 9 N -0.677 5.677 10 C 0.093 3.907 11 H 0.059 0.941 12 C -0.168 4.168 13 C -0.087 4.087 14 C 0.043 3.957 15 C -0.541 4.541 16 H 0.052 0.948 17 C 0.001 3.999 18 N -0.928 5.928 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.077 4.077 24 C -0.138 4.138 25 C -0.130 4.130 26 C -0.120 4.120 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.341 0.659 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.011 0.989 40 H -0.026 1.026 41 H 0.259 0.741 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.031 0.969 48 H 0.061 0.939 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.684 5.969 2.916 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.137 4.137 6 C -0.079 4.079 7 C 0.032 3.968 8 H 0.073 0.927 9 N -0.308 5.308 10 C -0.017 4.017 11 H 0.077 0.923 12 C -0.227 4.227 13 C -0.125 4.125 14 C 0.006 3.994 15 C -0.579 4.579 16 H 0.070 0.930 17 C -0.197 4.197 18 N -0.568 5.568 19 Si 0.782 3.218 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.096 4.096 24 C -0.196 4.196 25 C -0.188 4.188 26 C -0.138 4.138 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.029 0.971 40 H -0.008 1.008 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.080 0.920 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.155 5.956 2.252 22.092 hybrid contribution 0.963 -0.291 0.418 1.089 sum -20.192 5.665 2.669 21.141 Atomic orbital electron populations 1.20805 0.89428 1.03490 1.02943 1.20168 0.97316 0.92706 0.99300 1.21273 0.93963 0.98370 1.00977 1.21352 0.94932 0.98056 1.00165 1.21143 1.00197 0.92418 0.99944 1.19813 0.93754 0.94222 1.00103 1.20376 0.89468 0.93690 0.93225 0.92741 1.60469 1.37455 1.09517 1.23324 1.21520 0.94568 0.90444 0.95183 0.92301 1.22389 0.99697 1.02496 0.98098 1.21441 0.93601 0.99404 0.98077 1.18796 0.92483 0.95140 0.92982 1.21836 0.93793 1.48900 0.93357 0.93013 1.25893 1.03592 0.95230 0.94976 1.70129 1.34520 1.51347 1.00846 0.85531 0.80014 0.77642 0.78627 1.18843 1.20562 1.20543 1.20974 0.96425 0.97984 0.94246 1.21796 0.96966 1.02029 0.98764 1.21732 0.99529 0.98395 0.99105 1.21038 0.92877 0.98438 1.01456 0.90528 0.91014 0.90582 0.84375 0.85168 0.86776 0.83967 0.92199 0.92070 0.91771 0.93601 0.93606 0.97062 1.00805 0.93208 0.93657 0.92070 0.92916 0.91857 0.93761 0.94998 0.92038 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 2 C -0.09 -1.78 5.88 -19.86 -0.12 -1.89 16 3 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 4 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 5 C -0.12 -3.14 6.69 22.27 0.15 -2.99 16 6 C -0.08 -1.97 3.59 -19.87 -0.07 -2.04 16 7 C 0.14 3.97 1.90 44.17 0.08 4.05 16 8 H 0.05 1.42 6.96 -2.39 -0.02 1.40 16 9 N -0.68 -21.80 4.23 -473.32 -2.00 -23.80 16 10 C 0.09 3.11 2.40 44.92 0.11 3.22 16 11 H 0.06 2.13 7.27 -2.39 -0.02 2.11 16 12 C -0.17 -4.33 9.15 71.99 0.66 -3.67 16 13 C -0.09 -3.67 4.83 30.59 0.15 -3.53 16 14 C 0.04 2.34 4.86 29.85 0.15 2.48 16 15 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.00 0.03 5.46 84.66 0.46 0.49 16 18 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 19 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 20 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 C -0.08 -2.42 2.84 -10.79 -0.03 -2.45 16 24 C -0.14 -3.44 8.88 71.98 0.64 -2.80 16 25 C -0.13 -4.64 7.90 71.98 0.57 -4.07 16 26 C -0.12 -2.53 8.30 22.27 0.18 -2.34 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.11 3.50 6.90 -2.91 -0.02 3.48 16 33 H 0.34 10.31 7.65 -89.69 -0.69 9.62 16 34 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 35 H 0.06 1.38 7.43 -2.38 -0.02 1.36 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.01 0.65 6.93 -2.39 -0.02 0.63 16 40 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.04 1.68 7.58 -2.39 -0.02 1.66 16 43 H 0.06 1.45 6.53 -2.39 -0.02 1.43 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.04 1.90 6.80 -2.39 -0.02 1.88 16 47 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.06 1.97 5.61 -2.39 -0.01 1.95 16 49 H 0.13 2.33 8.04 -2.91 -0.02 2.31 16 Total: -1.00 -66.44 379.21 4.83 -61.61 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.21 Total: 24.88 kcal Atomic # 6 Polarization: -57.08 SS G_CDS: 4.31 Total: -52.77 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.72 Total: -81.66 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -66.44 4.83 -61.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.683 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds