Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 H 1.09001 * 109.47063 * 179.15515 * 3 2 1 5 5 N 1.46905 * 109.46935 * 299.15030 * 3 2 1 6 6 C 1.46895 * 111.00066 * 275.26575 * 5 3 2 7 7 H 1.08995 * 109.47360 * 34.95097 * 6 5 3 8 8 C 1.53009 * 109.46930 * 274.95148 * 6 5 3 9 9 C 1.52999 * 109.47130 * 154.95605 * 6 5 3 10 10 C 1.53004 * 109.47122 * 294.99538 * 9 6 5 11 11 C 1.50700 * 109.46939 * 180.02562 * 10 9 6 12 12 H 1.07993 * 120.00401 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99569 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99936 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99925 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47128 * 90.00003 * 15 13 11 17 17 H 1.48503 * 109.46770 * 209.99793 * 15 13 11 18 18 H 1.48499 * 109.47114 * 329.99505 * 15 13 11 19 19 C 1.50696 * 109.47404 * 59.14917 * 3 2 1 20 20 C 1.38259 * 120.00148 * 264.73089 * 19 3 2 21 21 C 1.38216 * 120.00121 * 179.80590 * 20 19 3 22 22 C 1.38256 * 119.99699 * 0.39617 * 21 20 19 23 23 C 1.38215 * 119.99952 * 359.85918 * 22 21 20 24 24 C 1.50702 * 119.99992 * 179.97438 * 23 22 21 25 25 C 1.38210 * 119.99962 * 85.00106 * 19 3 2 26 26 C 1.50702 * 119.99655 * 359.97438 * 25 19 3 27 27 H 1.08999 * 109.47067 * 293.66911 * 1 2 3 28 28 H 1.09010 * 109.46600 * 173.67216 * 1 2 3 29 29 H 1.08998 * 109.47174 * 53.67540 * 1 2 3 30 30 H 1.09000 * 109.47107 * 119.99734 * 2 1 3 31 31 H 1.09002 * 109.47305 * 239.99502 * 2 1 3 32 32 H 1.00899 * 110.99880 * 151.30406 * 5 3 2 33 33 H 1.09002 * 109.46546 * 60.00191 * 8 6 5 34 34 H 1.08996 * 109.46895 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.46669 * 300.00358 * 8 6 5 36 36 H 1.08994 * 109.47509 * 54.99598 * 9 6 5 37 37 H 1.09003 * 109.47366 * 174.99513 * 9 6 5 38 38 H 1.08994 * 109.46977 * 300.00385 * 10 9 6 39 39 H 1.08998 * 109.46968 * 60.00247 * 10 9 6 40 40 H 0.96997 * 120.00375 * 180.02562 * 14 13 11 41 41 H 1.08003 * 120.00087 * 359.97438 * 20 19 3 42 42 H 1.07997 * 120.00433 * 180.23488 * 21 20 19 43 43 H 1.08000 * 120.00321 * 179.83033 * 22 21 20 44 44 H 1.09000 * 109.47337 * 269.97501 * 24 23 22 45 45 H 1.09003 * 109.47199 * 29.98138 * 24 23 22 46 46 H 1.08999 * 109.47222 * 149.97319 * 24 23 22 47 47 H 1.09004 * 109.46792 * 90.00335 * 26 25 19 48 48 H 1.09006 * 109.47289 * 209.99818 * 26 25 19 49 49 H 1.08993 * 109.47420 * 329.99826 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0152 5 7 1.5672 2.1290 -1.2096 6 6 2.4633 1.8724 -2.3449 7 1 2.8542 0.8572 -2.2771 8 6 3.6240 2.8689 -2.3138 9 6 1.6875 2.0339 -3.6537 10 6 0.6049 0.9562 -3.7411 11 6 -0.1589 1.1149 -5.0305 12 1 0.1020 1.9050 -5.7190 13 6 -1.1908 0.2513 -5.3312 14 7 -1.8570 0.3894 -6.4567 15 14 -1.6426 -1.1149 -4.1400 16 1 -2.6658 -0.6201 -3.1843 17 1 -2.1891 -2.2703 -4.8962 18 1 -0.4319 -1.5404 -3.3927 19 6 1.5206 2.1590 1.2197 20 6 0.3695 2.9203 1.1364 21 6 -0.1091 3.5743 2.2561 22 6 0.5677 3.4736 3.4574 23 6 1.7213 2.7168 3.5394 24 6 2.4594 2.6076 4.8488 25 6 2.1979 2.0596 2.4204 26 6 3.4556 1.2341 2.5098 27 1 -0.3633 0.4126 0.9412 28 1 -0.3633 -1.0215 -0.1133 29 1 -0.3633 0.6087 -0.8279 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.4645 3.1194 -1.0465 33 1 4.1766 2.7539 -1.3814 34 1 4.2891 2.6783 -3.1560 35 1 3.2330 3.8842 -2.3817 36 1 1.2223 3.0192 -3.6812 37 1 2.3712 1.9312 -4.4964 38 1 1.0700 -0.0291 -3.7136 39 1 -0.0788 1.0589 -2.8984 40 1 -2.5832 -0.2179 -6.6681 41 1 -0.1572 3.0019 0.1970 42 1 -1.0103 4.1659 2.1919 43 1 0.1953 3.9868 4.3317 44 1 3.1971 3.4070 4.9178 45 1 1.7516 2.6941 5.6732 46 1 2.9633 1.6425 4.9024 47 1 4.3184 1.8610 2.2841 48 1 3.5540 0.8297 3.5173 49 1 3.4042 0.4148 1.7929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -3.899782 kcal Electronic energy + Delta-G solvation = -24047.034449 eV Core-core repulsion = 20972.687049 eV Total energy + Delta-G solvation = -3074.347400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19451 -37.63732 -34.69736 -33.45477 -32.75488 -31.38454 -30.61952 -28.93964 -27.48246 -26.49632 -25.57146 -24.96290 -22.31410 -21.06442 -20.73048 -19.73970 -19.35613 -16.61781 -16.39898 -16.09961 -15.35115 -14.87023 -14.56879 -14.31463 -14.09867 -14.00784 -13.59501 -13.05096 -12.96983 -12.82639 -12.75183 -12.71715 -12.60158 -12.49481 -12.25990 -11.95076 -11.78243 -11.50478 -11.39566 -11.32936 -11.03688 -10.88403 -10.82921 -10.65516 -10.34467 -10.28457 -9.79901 -9.57111 -9.43960 -8.98122 -8.56771 -8.54792 -8.40029 -7.98190 -5.92184 -3.87824 1.34537 1.37599 3.41120 3.47466 3.53728 3.71032 4.34646 4.57590 4.66616 4.73239 4.86461 4.99094 5.08778 5.17662 5.26324 5.31268 5.34083 5.38056 5.43800 5.49699 5.51904 5.55743 5.61817 5.65166 5.67688 5.73928 5.79951 5.87863 6.03107 6.06791 6.14433 6.20566 6.23457 6.33301 6.35502 6.47043 6.52746 6.54753 6.57165 6.66726 6.76841 6.87161 7.03725 7.14964 7.41929 7.57831 7.72125 7.78723 7.97299 8.68673 9.14585 9.72285 11.21799 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.004295 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.192863 B = 6517.497847 C = 6970.036400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C 0.127 3.873 4 H 0.050 0.950 5 N -0.667 5.667 6 C 0.081 3.919 7 H 0.072 0.928 8 C -0.180 4.180 9 C -0.089 4.089 10 C -0.005 4.005 11 C -0.515 4.515 12 H 0.067 0.933 13 C 0.063 3.937 14 N -0.910 5.910 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.293 1.293 18 H -0.264 1.264 19 C -0.073 4.073 20 C -0.105 4.105 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.084 4.084 26 C -0.122 4.122 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.339 0.661 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.136 0.864 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.422 4.245 22.262 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C 0.017 3.983 4 H 0.067 0.933 5 N -0.299 5.299 6 C -0.028 4.028 7 H 0.090 0.910 8 C -0.239 4.239 9 C -0.127 4.127 10 C -0.042 4.042 11 C -0.553 4.553 12 H 0.085 0.915 13 C -0.136 4.136 14 N -0.550 5.550 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.219 1.219 18 H -0.188 1.188 19 C -0.074 4.074 20 C -0.123 4.123 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.093 4.093 24 C -0.171 4.171 25 C -0.085 4.085 26 C -0.178 4.178 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.844 3.660 21.983 24.363 hybrid contribution 0.307 -0.128 0.722 0.795 sum 10.151 3.532 22.705 25.120 Atomic orbital electron populations 1.21732 0.95039 1.01187 1.02469 1.21474 0.97571 0.94273 1.00961 1.20443 0.96464 0.94294 0.87086 0.93256 1.60667 1.50452 1.15331 1.03445 1.21799 0.90633 0.98028 0.92374 0.90975 1.22517 0.99769 1.00458 1.01111 1.21436 0.97773 1.00774 0.92705 1.19474 0.94206 0.93379 0.97139 1.21277 1.15111 1.15217 1.03746 0.91486 1.25024 0.96048 0.97507 0.95067 1.69929 1.22588 1.38635 1.23874 0.86779 0.79160 0.81956 0.81396 1.20327 1.21937 1.18808 1.19802 0.95605 0.97624 0.94345 1.21184 0.95676 0.96205 0.99223 1.21139 0.99931 1.00060 0.92965 1.20953 0.95621 0.99771 0.97871 1.19656 0.96194 0.98322 0.95103 1.20821 0.99902 1.02322 0.94048 1.19528 0.97266 0.98967 0.92711 1.20932 0.94833 0.99287 1.02737 0.93592 0.94011 0.90160 0.92673 0.91577 0.84169 0.93773 0.92185 0.92684 0.92940 0.93006 0.97596 0.95334 0.93020 0.84600 0.86246 0.86609 0.91482 0.91886 0.91335 0.91458 0.91374 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.12 37.16 0.34 -1.96 16 2 C -0.10 -1.47 5.59 -26.73 -0.15 -1.62 16 3 C 0.13 1.65 1.65 -68.87 -0.11 1.54 16 4 H 0.05 0.62 5.97 -51.93 -0.31 0.31 16 5 N -0.67 -9.74 3.93 -100.95 -0.40 -10.14 16 6 C 0.08 1.25 2.40 -67.71 -0.16 1.09 16 7 H 0.07 1.15 7.09 -51.93 -0.37 0.78 16 8 C -0.18 -2.31 9.15 37.16 0.34 -1.97 16 9 C -0.09 -1.74 4.83 -26.73 -0.13 -1.87 16 10 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 11 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 12 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 15 Si 0.88 22.52 27.47 -169.99 -4.67 17.86 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 19 C -0.07 -0.91 4.17 -104.63 -0.44 -1.35 16 20 C -0.10 -1.33 7.66 -39.58 -0.30 -1.63 16 21 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 23 C -0.09 -0.98 5.88 -104.62 -0.62 -1.60 16 24 C -0.11 -0.90 9.60 36.01 0.35 -0.55 16 25 C -0.08 -0.95 5.88 -104.63 -0.62 -1.57 16 26 C -0.12 -1.13 8.81 36.01 0.32 -0.81 16 27 H 0.04 0.67 6.86 -51.93 -0.36 0.32 16 28 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.08 1.45 6.45 -51.93 -0.34 1.11 16 30 H 0.05 0.68 6.89 -51.93 -0.36 0.32 16 31 H 0.07 1.00 7.40 -51.93 -0.38 0.62 16 32 H 0.34 4.68 7.00 -39.29 -0.28 4.41 16 33 H 0.04 0.52 7.43 -51.93 -0.39 0.13 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.14 7.20 -51.93 -0.37 -0.23 16 39 H 0.03 0.69 6.19 -51.93 -0.32 0.37 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.14 1.82 6.96 -52.48 -0.37 1.46 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 46 H 0.07 0.49 5.95 -51.93 -0.31 0.18 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.54 5.95 -51.93 -0.31 0.23 16 49 H 0.07 0.67 5.42 -51.93 -0.28 0.39 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -31.30 369.88 -9.76 -41.06 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.54 Total: 3.28 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -2.50 Total: -29.55 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.38 Total: -38.22 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.30 -9.76 -41.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.160 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds