Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 H 1.09001 * 109.47063 * 179.15515 * 3 2 1 5 5 N 1.46905 * 109.46935 * 299.15030 * 3 2 1 6 6 C 1.46895 * 111.00066 * 275.26575 * 5 3 2 7 7 H 1.08995 * 109.47360 * 34.95097 * 6 5 3 8 8 C 1.53009 * 109.46930 * 274.95148 * 6 5 3 9 9 C 1.52999 * 109.47130 * 154.95605 * 6 5 3 10 10 C 1.53004 * 109.47122 * 294.99538 * 9 6 5 11 11 C 1.50700 * 109.46939 * 180.02562 * 10 9 6 12 12 H 1.07993 * 120.00401 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99569 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99936 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99925 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47128 * 90.00003 * 15 13 11 17 17 H 1.48503 * 109.46770 * 209.99793 * 15 13 11 18 18 H 1.48499 * 109.47114 * 329.99505 * 15 13 11 19 19 C 1.50696 * 109.47404 * 59.14917 * 3 2 1 20 20 C 1.38259 * 120.00148 * 264.73089 * 19 3 2 21 21 C 1.38216 * 120.00121 * 179.80590 * 20 19 3 22 22 C 1.38256 * 119.99699 * 0.39617 * 21 20 19 23 23 C 1.38215 * 119.99952 * 359.85918 * 22 21 20 24 24 C 1.50702 * 119.99992 * 179.97438 * 23 22 21 25 25 C 1.38210 * 119.99962 * 85.00106 * 19 3 2 26 26 C 1.50702 * 119.99655 * 359.97438 * 25 19 3 27 27 H 1.08999 * 109.47067 * 293.66911 * 1 2 3 28 28 H 1.09010 * 109.46600 * 173.67216 * 1 2 3 29 29 H 1.08998 * 109.47174 * 53.67540 * 1 2 3 30 30 H 1.09000 * 109.47107 * 119.99734 * 2 1 3 31 31 H 1.09002 * 109.47305 * 239.99502 * 2 1 3 32 32 H 1.00899 * 110.99880 * 151.30406 * 5 3 2 33 33 H 1.09002 * 109.46546 * 60.00191 * 8 6 5 34 34 H 1.08996 * 109.46895 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.46669 * 300.00358 * 8 6 5 36 36 H 1.08994 * 109.47509 * 54.99598 * 9 6 5 37 37 H 1.09003 * 109.47366 * 174.99513 * 9 6 5 38 38 H 1.08994 * 109.46977 * 300.00385 * 10 9 6 39 39 H 1.08998 * 109.46968 * 60.00247 * 10 9 6 40 40 H 0.96997 * 120.00375 * 180.02562 * 14 13 11 41 41 H 1.08003 * 120.00087 * 359.97438 * 20 19 3 42 42 H 1.07997 * 120.00433 * 180.23488 * 21 20 19 43 43 H 1.08000 * 120.00321 * 179.83033 * 22 21 20 44 44 H 1.09000 * 109.47337 * 269.97501 * 24 23 22 45 45 H 1.09003 * 109.47199 * 29.98138 * 24 23 22 46 46 H 1.08999 * 109.47222 * 149.97319 * 24 23 22 47 47 H 1.09004 * 109.46792 * 90.00335 * 26 25 19 48 48 H 1.09006 * 109.47289 * 209.99818 * 26 25 19 49 49 H 1.08993 * 109.47420 * 329.99826 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0152 5 7 1.5672 2.1290 -1.2096 6 6 2.4633 1.8724 -2.3449 7 1 2.8542 0.8572 -2.2771 8 6 3.6240 2.8689 -2.3138 9 6 1.6875 2.0339 -3.6537 10 6 0.6049 0.9562 -3.7411 11 6 -0.1589 1.1149 -5.0305 12 1 0.1020 1.9050 -5.7190 13 6 -1.1908 0.2513 -5.3312 14 7 -1.8570 0.3894 -6.4567 15 14 -1.6426 -1.1149 -4.1400 16 1 -2.6658 -0.6201 -3.1843 17 1 -2.1891 -2.2703 -4.8962 18 1 -0.4319 -1.5404 -3.3927 19 6 1.5206 2.1590 1.2197 20 6 0.3695 2.9203 1.1364 21 6 -0.1091 3.5743 2.2561 22 6 0.5677 3.4736 3.4574 23 6 1.7213 2.7168 3.5394 24 6 2.4594 2.6076 4.8488 25 6 2.1979 2.0596 2.4204 26 6 3.4556 1.2341 2.5098 27 1 -0.3633 0.4126 0.9412 28 1 -0.3633 -1.0215 -0.1133 29 1 -0.3633 0.6087 -0.8279 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.4645 3.1194 -1.0465 33 1 4.1766 2.7539 -1.3814 34 1 4.2891 2.6783 -3.1560 35 1 3.2330 3.8842 -2.3817 36 1 1.2223 3.0192 -3.6812 37 1 2.3712 1.9312 -4.4964 38 1 1.0700 -0.0291 -3.7136 39 1 -0.0788 1.0589 -2.8984 40 1 -2.5832 -0.2179 -6.6681 41 1 -0.1572 3.0019 0.1970 42 1 -1.0103 4.1659 2.1919 43 1 0.1953 3.9868 4.3317 44 1 3.1971 3.4070 4.9178 45 1 1.7516 2.6941 5.6732 46 1 2.9633 1.6425 4.9024 47 1 4.3184 1.8610 2.2841 48 1 3.5540 0.8297 3.5173 49 1 3.4042 0.4148 1.7929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -19.937934 kcal Electronic energy + Delta-G solvation = -24047.729916 eV Core-core repulsion = 20972.687049 eV Total energy + Delta-G solvation = -3075.042867 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08388 -38.76002 -36.05690 -34.74301 -34.22707 -32.40870 -32.27862 -30.18260 -28.26514 -27.30751 -27.09082 -26.29131 -23.41792 -22.66045 -21.67764 -21.13829 -20.38181 -18.81387 -17.36354 -17.06238 -16.36355 -16.25396 -15.97199 -15.58670 -15.21921 -15.02933 -14.70116 -14.59712 -14.20409 -13.99394 -13.89510 -13.66028 -13.62063 -13.51202 -13.38661 -13.22482 -12.89974 -12.70237 -12.64874 -12.52000 -12.41079 -12.13547 -11.88316 -11.83531 -11.74452 -11.58138 -11.46661 -11.32882 -11.20763 -11.05262 -10.69315 -9.43904 -9.36454 -9.11124 -8.25609 -6.26567 0.49840 0.53707 1.36304 1.37069 1.50602 2.39057 2.86590 3.11193 3.25766 3.73676 3.98977 4.05330 4.08831 4.21217 4.24405 4.26370 4.33108 4.40720 4.45846 4.53152 4.56713 4.72291 4.73956 4.76490 4.83637 4.88560 4.91690 4.95339 4.97263 5.02144 5.04830 5.11829 5.12054 5.15594 5.24908 5.27387 5.37088 5.40025 5.45611 5.55613 5.65416 5.68713 5.70769 5.75266 5.81134 5.85053 6.20812 6.34652 6.37123 6.62167 6.82732 7.37484 8.91729 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.004295 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.192863 B = 6517.497847 C = 6970.036400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C 0.135 3.865 4 H 0.061 0.939 5 N -0.680 5.680 6 C 0.092 3.908 7 H 0.071 0.929 8 C -0.170 4.170 9 C -0.083 4.083 10 C 0.006 3.994 11 C -0.526 4.526 12 H 0.027 0.973 13 C 0.003 3.997 14 N -0.957 5.957 15 Si 0.948 3.052 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.246 1.246 19 C -0.083 4.083 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.098 4.098 24 C -0.113 4.113 25 C -0.092 4.092 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.343 0.657 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.004 0.996 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.957 3.683 25.644 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C 0.026 3.974 4 H 0.079 0.921 5 N -0.312 5.312 6 C -0.018 4.018 7 H 0.089 0.911 8 C -0.229 4.229 9 C -0.121 4.121 10 C -0.032 4.032 11 C -0.564 4.564 12 H 0.046 0.954 13 C -0.193 4.193 14 N -0.598 5.598 15 Si 0.772 3.228 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.170 1.170 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.098 4.098 24 C -0.169 4.169 25 C -0.092 4.092 26 C -0.177 4.177 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.163 0.837 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.398 3.112 25.375 27.991 hybrid contribution -0.200 0.134 -0.362 0.435 sum 11.199 3.245 25.013 27.597 Atomic orbital electron populations 1.21660 0.96374 1.00356 1.01599 1.21482 0.96282 0.95145 1.01265 1.20358 0.96957 0.93489 0.86594 0.92087 1.60550 1.50768 1.15862 1.04056 1.21541 0.90895 0.98907 0.90459 0.91056 1.22393 0.98694 0.99541 1.02268 1.21315 0.96817 0.98625 0.95356 1.19345 0.94869 0.94742 0.94226 1.21683 1.15687 1.13944 1.05090 0.95443 1.25970 0.96025 1.00401 0.96913 1.70080 1.23526 1.40152 1.26089 0.85686 0.79548 0.78508 0.79052 1.19467 1.21413 1.16965 1.19758 0.95893 0.98118 0.94600 1.21133 0.96255 0.97447 0.99102 1.21320 1.00513 1.00162 0.93083 1.21250 0.95594 0.99643 0.98141 1.20035 0.96149 0.97503 0.96103 1.20871 1.00142 1.03184 0.92739 1.19795 0.97885 0.99166 0.92380 1.20970 0.94040 0.99011 1.03678 0.93029 0.94284 0.92863 0.90699 0.92851 0.83749 0.91906 0.91808 0.92527 0.93868 0.93580 0.97731 0.95259 0.92784 0.86235 0.85318 0.84619 0.90516 0.90879 0.90432 0.90594 0.89813 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.12 71.98 0.66 -3.66 16 2 C -0.10 -2.72 5.59 30.59 0.17 -2.55 16 3 C 0.14 3.29 1.65 44.17 0.07 3.36 16 4 H 0.06 1.35 5.97 -2.39 -0.01 1.34 16 5 N -0.68 -19.29 3.93 -473.31 -1.86 -21.15 16 6 C 0.09 2.73 2.40 44.92 0.11 2.84 16 7 H 0.07 2.16 7.09 -2.39 -0.02 2.14 16 8 C -0.17 -4.03 9.15 71.99 0.66 -3.38 16 9 C -0.08 -3.27 4.83 30.60 0.15 -3.12 16 10 C 0.01 0.27 3.93 29.85 0.12 0.39 16 11 C -0.53 -31.59 9.66 25.60 0.25 -31.34 16 12 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 13 C 0.00 0.16 5.47 84.66 0.46 0.62 16 14 N -0.96 -62.39 13.96 21.45 0.30 -62.10 16 15 Si 0.95 46.92 27.47 68.60 1.88 48.80 16 16 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 19 C -0.08 -1.94 4.17 -19.87 -0.08 -2.02 16 20 C -0.12 -2.99 7.66 22.27 0.17 -2.82 16 21 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 22 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 23 C -0.10 -1.80 5.88 -19.87 -0.12 -1.91 16 24 C -0.11 -1.37 9.60 71.24 0.68 -0.69 16 25 C -0.09 -1.84 5.88 -19.87 -0.12 -1.96 16 26 C -0.12 -1.83 8.81 71.24 0.63 -1.21 16 27 H 0.05 1.47 6.86 -2.39 -0.02 1.45 16 28 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.05 1.90 6.45 -2.39 -0.02 1.88 16 30 H 0.07 1.66 6.89 -2.39 -0.02 1.65 16 31 H 0.05 1.53 7.40 -2.39 -0.02 1.51 16 32 H 0.34 9.28 7.00 -89.69 -0.63 8.65 16 33 H 0.06 1.28 7.43 -2.39 -0.02 1.26 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.00 0.21 7.20 -2.39 -0.02 0.20 16 39 H 0.03 1.42 6.19 -2.39 -0.01 1.40 16 40 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 41 H 0.12 3.27 6.96 -2.91 -0.02 3.25 16 42 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 46 H 0.08 0.81 5.95 -2.39 -0.01 0.79 16 47 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.08 1.00 5.95 -2.38 -0.01 0.98 16 49 H 0.07 1.07 5.42 -2.39 -0.01 1.06 16 Total: -1.00 -68.85 369.88 4.80 -64.04 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.23 Total: 22.72 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 4.25 Total: -52.33 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.56 Total: -83.24 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.88 Total: 48.80 kcal Total: -68.85 4.80 -64.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.106 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds