Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47312 * 2 1 4 4 C 1.52999 * 109.47139 * 174.86298 * 3 2 1 5 5 H 1.09006 * 109.46722 * 305.74711 * 4 3 2 6 6 N 1.46903 * 109.47139 * 65.73919 * 4 3 2 7 7 C 1.46902 * 110.99821 * 206.55705 * 6 4 3 8 8 H 1.09000 * 109.47524 * 323.62798 * 7 6 4 9 9 C 1.53001 * 109.47107 * 83.63156 * 7 6 4 10 10 C 1.53004 * 109.46741 * 203.62929 * 7 6 4 11 11 C 1.52999 * 109.47379 * 65.00208 * 10 7 6 12 12 C 1.50694 * 109.46920 * 179.97438 * 11 10 7 13 13 H 1.07996 * 120.00321 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99952 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99845 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00383 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47144 * 119.99917 * 16 14 12 19 19 H 1.48501 * 109.47137 * 239.99902 * 16 14 12 20 20 C 1.50690 * 109.47172 * 185.74615 * 4 3 2 21 21 C 1.38262 * 119.99871 * 279.72219 * 20 4 3 22 22 C 1.38212 * 119.99898 * 179.76419 * 21 20 4 23 23 C 1.38255 * 120.00211 * 0.51350 * 22 21 20 24 24 C 1.38212 * 119.99961 * 359.74008 * 23 22 21 25 25 C 1.50692 * 120.00062 * 179.97438 * 24 23 22 26 26 C 1.38214 * 120.00319 * 99.99707 * 20 4 3 27 27 H 1.08992 * 109.47560 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47183 * 300.00177 * 1 2 3 29 29 H 1.08999 * 109.47149 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.47183 * 239.99823 * 2 1 3 31 31 H 1.08999 * 109.47149 * 120.00247 * 2 1 3 32 32 H 1.09000 * 109.46725 * 294.86018 * 3 2 1 33 33 H 1.08998 * 109.46777 * 54.85890 * 3 2 1 34 34 H 1.00902 * 111.00240 * 330.51490 * 6 4 3 35 35 H 1.08995 * 109.47126 * 184.70490 * 9 7 6 36 36 H 1.09002 * 109.46574 * 304.70174 * 9 7 6 37 37 H 1.08998 * 109.47240 * 64.70012 * 9 7 6 38 38 H 1.09001 * 109.46617 * 185.00354 * 10 7 6 39 39 H 1.09005 * 109.46952 * 304.99949 * 10 7 6 40 40 H 1.08997 * 109.46667 * 299.99778 * 11 10 7 41 41 H 1.09001 * 109.46571 * 59.99896 * 11 10 7 42 42 H 0.96996 * 119.99938 * 180.02562 * 15 14 12 43 43 H 1.08008 * 119.99921 * 0.02562 * 21 20 4 44 44 H 1.08000 * 119.99642 * 180.23162 * 22 21 20 45 45 H 1.07994 * 119.99932 * 179.72294 * 23 22 21 46 46 H 1.09001 * 109.47442 * 270.02406 * 25 24 23 47 47 H 1.08996 * 109.47309 * 30.02311 * 25 24 23 48 48 H 1.08999 * 109.47038 * 150.02495 * 25 24 23 49 49 H 1.07994 * 119.99817 * 0.02562 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5646 1.4444 0.1292 5 1 3.8554 0.8696 1.0085 6 7 4.1584 0.8385 -1.0701 7 6 5.4704 0.2506 -0.7683 8 1 5.9889 0.8738 -0.0398 9 6 5.2797 -1.1545 -0.1937 10 6 6.2998 0.1686 -2.0515 11 6 6.5962 1.5815 -2.5583 12 6 7.4136 1.5007 -3.8217 13 1 7.6933 0.5380 -4.2233 14 6 7.8045 2.6559 -4.4650 15 7 7.4643 3.8283 -3.9757 16 14 8.8171 2.5558 -6.0315 17 1 9.0659 1.1315 -6.3699 18 1 8.0767 3.2069 -7.1420 19 1 10.1142 3.2496 -5.8277 20 6 4.0549 2.8622 0.2710 21 6 4.1887 3.6627 -0.8483 22 6 4.6338 4.9646 -0.7176 23 6 4.9554 5.4632 0.5311 24 6 4.8267 4.6614 1.6495 25 6 5.1777 5.2047 3.0106 26 6 4.3764 3.3607 1.5195 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7538 1.9290 -0.9325 33 1 1.6035 1.9822 0.8404 34 1 3.5385 0.1518 -1.4731 35 1 6.2462 -1.5581 0.1077 36 1 4.6199 -1.1062 0.6726 37 1 4.8368 -1.8002 -0.9521 38 1 7.2374 -0.3478 -1.8456 39 1 5.7418 -0.3800 -2.8103 40 1 5.6586 2.0978 -2.7641 41 1 7.1542 2.1300 -1.7994 42 1 7.7389 4.6410 -4.4285 43 1 3.9414 3.2719 -1.8244 44 1 4.7347 5.5910 -1.5916 45 1 5.3074 6.4791 0.6326 46 1 6.2304 5.0125 3.2181 47 1 4.9934 6.2787 3.0317 48 1 4.5633 4.7157 3.7665 49 1 4.2765 2.7339 2.3932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -14.179104 kcal Electronic energy + Delta-G solvation = -23845.863487 eV Core-core repulsion = 20771.070341 eV Total energy + Delta-G solvation = -3074.793145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.39776 -37.45500 -35.08134 -33.05228 -32.55766 -31.55821 -30.02477 -28.85492 -27.19257 -26.45396 -24.96251 -23.68810 -21.55522 -21.37742 -21.12189 -19.69308 -19.38142 -16.18811 -15.94598 -15.85247 -15.11009 -14.78200 -14.64798 -14.32451 -14.17697 -13.54225 -13.44962 -13.19904 -12.92473 -12.78464 -12.53340 -12.40280 -12.26432 -12.05450 -11.98581 -11.74733 -11.55773 -11.35987 -11.15807 -11.09662 -10.97959 -10.77060 -10.66203 -10.47185 -10.39082 -10.27684 -10.04538 -9.56334 -9.14930 -8.82319 -8.27760 -8.18236 -8.02612 -7.83092 -5.83495 -3.83987 1.87339 1.94874 3.38193 3.45687 3.49701 4.25207 4.51508 4.57746 4.83297 4.95682 5.02909 5.20126 5.23119 5.36237 5.45811 5.47948 5.51717 5.56499 5.57242 5.66776 5.69315 5.71331 5.73583 5.76045 5.79127 5.91311 5.98739 6.07152 6.10270 6.14523 6.18403 6.25065 6.31473 6.34615 6.49157 6.54594 6.62827 6.75331 6.94947 7.00528 7.13783 7.21041 7.39248 7.57294 7.63513 7.90441 7.92410 8.15738 8.30202 8.63767 9.25059 9.77988 11.26896 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005369 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.502084 B = 5214.286800 C = 6729.715838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.117 4.117 4 C 0.129 3.871 5 H 0.045 0.955 6 N -0.664 5.664 7 C 0.086 3.914 8 H 0.071 0.929 9 C -0.180 4.180 10 C -0.098 4.098 11 C 0.034 3.966 12 C -0.517 4.517 13 H 0.049 0.951 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.073 4.073 21 C -0.068 4.068 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.108 4.108 26 C -0.125 4.125 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.336 0.664 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.005 0.995 42 H 0.256 0.744 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 -2.928 12.836 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.155 4.155 4 C 0.019 3.981 5 H 0.063 0.937 6 N -0.296 5.296 7 C -0.024 4.024 8 H 0.089 0.911 9 C -0.239 4.239 10 C -0.136 4.136 11 C -0.003 4.003 12 C -0.556 4.556 13 H 0.067 0.933 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.711 3.289 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.074 4.074 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.102 4.102 25 C -0.165 4.165 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.065 0.935 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.437 -2.164 12.569 17.131 hybrid contribution 0.585 -0.770 -0.448 1.066 sum -10.852 -2.934 12.121 16.532 Atomic orbital electron populations 1.21744 0.95832 1.01333 1.01816 1.21591 0.95936 0.97115 1.01828 1.21789 0.94098 0.96566 1.03036 1.20375 0.92995 0.92021 0.92660 0.93676 1.60525 1.04288 1.37672 1.27146 1.21729 0.90277 0.91735 0.98619 0.91099 1.22544 1.01562 0.99460 1.00353 1.21627 0.96460 1.01687 0.93875 1.18970 0.96970 0.89881 0.94511 1.21399 1.32839 0.92002 1.09345 0.93263 1.24966 0.96375 0.95665 0.97252 1.69995 1.46524 0.96998 1.39508 0.86691 0.80190 0.77887 0.84113 1.19973 1.21199 1.21275 1.19740 0.99503 0.95171 0.92938 1.21048 0.96331 0.92387 0.98870 1.21207 0.98182 0.96312 0.96913 1.20933 1.01390 0.99399 0.92586 1.19687 1.00925 0.94370 0.95199 1.20708 1.01401 1.00625 0.93736 1.20722 1.01868 0.95135 0.96651 0.93008 0.92926 0.92586 0.91774 0.92389 0.90737 0.91552 0.84354 0.92483 0.93767 0.92834 0.93772 0.93638 0.94749 0.97618 0.93473 0.85004 0.86192 0.87013 0.91695 0.92077 0.92227 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.26 5.68 -26.73 -0.15 -1.41 16 3 C -0.12 -1.36 4.76 -26.73 -0.13 -1.49 16 4 C 0.13 1.81 2.02 -68.87 -0.14 1.67 16 5 H 0.05 0.62 6.86 -51.93 -0.36 0.26 16 6 N -0.66 -10.45 4.74 -100.95 -0.48 -10.93 16 7 C 0.09 1.47 2.40 -67.71 -0.16 1.30 16 8 H 0.07 1.34 7.71 -51.93 -0.40 0.94 16 9 C -0.18 -2.48 9.16 37.16 0.34 -2.14 16 10 C -0.10 -2.07 4.83 -26.73 -0.13 -2.19 16 11 C 0.03 0.88 4.86 -27.89 -0.14 0.75 16 12 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 16 Si 0.88 22.17 29.54 -169.99 -5.02 17.14 16 17 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 C -0.07 -1.17 4.69 -104.63 -0.49 -1.66 16 21 C -0.07 -1.25 9.25 -39.58 -0.37 -1.61 16 22 C -0.11 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.12 -2.01 9.70 -39.58 -0.38 -2.39 16 24 C -0.10 -1.52 5.88 -104.63 -0.62 -2.13 16 25 C -0.11 -1.24 10.01 36.00 0.36 -0.88 16 26 C -0.13 -1.89 9.33 -39.58 -0.37 -2.26 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 6.64 -51.93 -0.34 0.31 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.34 4.80 6.35 -39.29 -0.25 4.55 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.54 7.29 -51.93 -0.38 0.16 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.95 7.24 -51.93 -0.38 0.57 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.13 2.62 7.27 -52.48 -0.38 2.24 16 44 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 48 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 49 H 0.11 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -30.49 389.44 -10.91 -41.40 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -9.21 Total: 4.21 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: -2.81 Total: -31.45 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.26 Total: -37.17 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.49 -10.91 -41.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.222 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds