Wall clock time and date at job start Tue Mar 31 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47312 * 2 1 4 4 C 1.52999 * 109.47139 * 174.86298 * 3 2 1 5 5 H 1.09006 * 109.46722 * 305.74711 * 4 3 2 6 6 N 1.46903 * 109.47139 * 65.73919 * 4 3 2 7 7 C 1.46902 * 110.99821 * 206.55705 * 6 4 3 8 8 H 1.09000 * 109.47524 * 323.62798 * 7 6 4 9 9 C 1.53001 * 109.47107 * 83.63156 * 7 6 4 10 10 C 1.53004 * 109.46741 * 203.62929 * 7 6 4 11 11 C 1.52999 * 109.47379 * 65.00208 * 10 7 6 12 12 C 1.50694 * 109.46920 * 179.97438 * 11 10 7 13 13 H 1.07996 * 120.00321 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99952 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99845 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00383 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47144 * 119.99917 * 16 14 12 19 19 H 1.48501 * 109.47137 * 239.99902 * 16 14 12 20 20 C 1.50690 * 109.47172 * 185.74615 * 4 3 2 21 21 C 1.38262 * 119.99871 * 279.72219 * 20 4 3 22 22 C 1.38212 * 119.99898 * 179.76419 * 21 20 4 23 23 C 1.38255 * 120.00211 * 0.51350 * 22 21 20 24 24 C 1.38212 * 119.99961 * 359.74008 * 23 22 21 25 25 C 1.50692 * 120.00062 * 179.97438 * 24 23 22 26 26 C 1.38214 * 120.00319 * 99.99707 * 20 4 3 27 27 H 1.08992 * 109.47560 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47183 * 300.00177 * 1 2 3 29 29 H 1.08999 * 109.47149 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.47183 * 239.99823 * 2 1 3 31 31 H 1.08999 * 109.47149 * 120.00247 * 2 1 3 32 32 H 1.09000 * 109.46725 * 294.86018 * 3 2 1 33 33 H 1.08998 * 109.46777 * 54.85890 * 3 2 1 34 34 H 1.00902 * 111.00240 * 330.51490 * 6 4 3 35 35 H 1.08995 * 109.47126 * 184.70490 * 9 7 6 36 36 H 1.09002 * 109.46574 * 304.70174 * 9 7 6 37 37 H 1.08998 * 109.47240 * 64.70012 * 9 7 6 38 38 H 1.09001 * 109.46617 * 185.00354 * 10 7 6 39 39 H 1.09005 * 109.46952 * 304.99949 * 10 7 6 40 40 H 1.08997 * 109.46667 * 299.99778 * 11 10 7 41 41 H 1.09001 * 109.46571 * 59.99896 * 11 10 7 42 42 H 0.96996 * 119.99938 * 180.02562 * 15 14 12 43 43 H 1.08008 * 119.99921 * 0.02562 * 21 20 4 44 44 H 1.08000 * 119.99642 * 180.23162 * 22 21 20 45 45 H 1.07994 * 119.99932 * 179.72294 * 23 22 21 46 46 H 1.09001 * 109.47442 * 270.02406 * 25 24 23 47 47 H 1.08996 * 109.47309 * 30.02311 * 25 24 23 48 48 H 1.08999 * 109.47038 * 150.02495 * 25 24 23 49 49 H 1.07994 * 119.99817 * 0.02562 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5646 1.4444 0.1292 5 1 3.8554 0.8696 1.0085 6 7 4.1584 0.8385 -1.0701 7 6 5.4704 0.2506 -0.7683 8 1 5.9889 0.8738 -0.0398 9 6 5.2797 -1.1545 -0.1937 10 6 6.2998 0.1686 -2.0515 11 6 6.5962 1.5815 -2.5583 12 6 7.4136 1.5007 -3.8217 13 1 7.6933 0.5380 -4.2233 14 6 7.8045 2.6559 -4.4650 15 7 7.4643 3.8283 -3.9757 16 14 8.8171 2.5558 -6.0315 17 1 9.0659 1.1315 -6.3699 18 1 8.0767 3.2069 -7.1420 19 1 10.1142 3.2496 -5.8277 20 6 4.0549 2.8622 0.2710 21 6 4.1887 3.6627 -0.8483 22 6 4.6338 4.9646 -0.7176 23 6 4.9554 5.4632 0.5311 24 6 4.8267 4.6614 1.6495 25 6 5.1777 5.2047 3.0106 26 6 4.3764 3.3607 1.5195 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7538 1.9290 -0.9325 33 1 1.6035 1.9822 0.8404 34 1 3.5385 0.1518 -1.4731 35 1 6.2462 -1.5581 0.1077 36 1 4.6199 -1.1062 0.6726 37 1 4.8368 -1.8002 -0.9521 38 1 7.2374 -0.3478 -1.8456 39 1 5.7418 -0.3800 -2.8103 40 1 5.6586 2.0978 -2.7641 41 1 7.1542 2.1300 -1.7994 42 1 7.7389 4.6410 -4.4285 43 1 3.9414 3.2719 -1.8244 44 1 4.7347 5.5910 -1.5916 45 1 5.3074 6.4791 0.6326 46 1 6.2304 5.0125 3.2181 47 1 4.9934 6.2787 3.0317 48 1 4.5633 4.7157 3.7665 49 1 4.2765 2.7339 2.3932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:54 Heat of formation + Delta-G solvation = -28.729951 kcal Electronic energy + Delta-G solvation = -23846.494459 eV Core-core repulsion = 20771.070341 eV Total energy + Delta-G solvation = -3075.424117 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63438 -38.71871 -36.39244 -34.89586 -33.79637 -32.85919 -31.70346 -30.23264 -28.20856 -27.56658 -26.92373 -24.76140 -23.22024 -22.82425 -22.02886 -21.29216 -20.57655 -18.33936 -17.33808 -17.05576 -16.54652 -16.17490 -15.99326 -15.71055 -15.38840 -14.73346 -14.56257 -14.41017 -14.29036 -14.22770 -13.84123 -13.72541 -13.60086 -13.27537 -13.11854 -12.94956 -12.87239 -12.83559 -12.66776 -12.46273 -12.31741 -12.17952 -12.01876 -11.76056 -11.67907 -11.49737 -11.45080 -11.34046 -11.15909 -10.89396 -10.44924 -9.56386 -9.30585 -9.08128 -8.09728 -6.19850 0.58497 0.64982 1.38675 1.38786 1.51630 2.44267 2.96127 3.21529 3.32182 3.82153 4.02485 4.08410 4.10628 4.18492 4.20098 4.30666 4.34323 4.41300 4.48981 4.54891 4.61208 4.76126 4.78736 4.80394 4.83111 4.87757 4.89408 4.95919 5.02129 5.05959 5.07529 5.13136 5.14654 5.28044 5.31040 5.33780 5.37557 5.42923 5.48429 5.52791 5.63218 5.75173 5.78696 5.86283 5.96537 6.10195 6.28131 6.38366 6.40021 6.73821 7.00006 7.47300 9.00360 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005369 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.502084 B = 5214.286800 C = 6729.715838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.108 4.108 4 C 0.135 3.865 5 H 0.060 0.940 6 N -0.681 5.681 7 C 0.097 3.903 8 H 0.049 0.951 9 C -0.168 4.168 10 C -0.090 4.090 11 C 0.049 3.951 12 C -0.543 4.543 13 H 0.051 0.949 14 C 0.003 3.997 15 N -0.924 5.924 16 Si 0.955 3.045 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.281 1.281 20 C -0.076 4.076 21 C -0.093 4.093 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.100 4.100 25 C -0.105 4.105 26 C -0.129 4.129 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.346 0.654 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.048 0.952 40 H 0.011 0.989 41 H -0.034 1.034 42 H 0.258 0.742 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 -4.517 14.463 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.146 4.146 4 C 0.025 3.975 5 H 0.077 0.923 6 N -0.315 5.315 7 C -0.013 4.013 8 H 0.068 0.932 9 C -0.227 4.227 10 C -0.128 4.128 11 C 0.012 3.988 12 C -0.581 4.581 13 H 0.070 0.930 14 C -0.195 4.195 15 N -0.564 5.564 16 Si 0.780 3.220 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.077 4.077 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.100 4.100 25 C -0.162 4.162 26 C -0.148 4.148 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.167 0.833 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.030 0.970 41 H -0.015 1.015 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.147 0.853 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.839 -3.769 14.197 18.866 hybrid contribution 0.711 -0.209 -0.951 1.206 sum -11.128 -3.978 13.246 17.751 Atomic orbital electron populations 1.21727 0.94872 1.02076 1.01882 1.21550 0.96725 0.95519 1.02146 1.21709 0.92328 0.98054 1.02535 1.20403 0.94278 0.90540 0.92231 0.92251 1.60345 1.04160 1.38247 1.28702 1.21436 0.90137 0.93892 0.95865 0.93235 1.22394 1.02446 0.96654 1.01209 1.21474 0.97383 0.97942 0.96021 1.18729 0.94796 0.92494 0.92795 1.21835 1.33512 0.92270 1.10514 0.93048 1.25870 0.97517 0.95225 1.00844 1.70146 1.47451 0.97744 1.41075 0.85560 0.78413 0.78394 0.79622 1.18844 1.20492 1.20655 1.20027 0.98888 0.96079 0.92715 1.20888 0.98545 0.93136 0.98586 1.21256 0.99807 0.96506 0.97659 1.21161 1.01517 1.00563 0.92188 1.20160 0.99203 0.94182 0.96497 1.20768 1.02035 1.01596 0.91782 1.21090 1.01031 0.95657 0.96991 0.91920 0.92324 0.93124 0.92095 0.91335 0.92394 0.90680 0.83296 0.92094 0.91589 0.91810 0.93848 0.93349 0.97022 1.01533 0.93303 0.87951 0.87801 0.85349 0.91154 0.90748 0.90096 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.12 -2.15 5.68 30.60 0.17 -1.98 16 3 C -0.11 -2.42 4.76 30.59 0.15 -2.27 16 4 C 0.14 3.68 2.02 44.17 0.09 3.77 16 5 H 0.06 1.47 6.86 -2.38 -0.02 1.46 16 6 N -0.68 -21.59 4.74 -473.30 -2.24 -23.83 16 7 C 0.10 3.27 2.40 44.92 0.11 3.38 16 8 H 0.05 1.89 7.71 -2.39 -0.02 1.87 16 9 C -0.17 -4.20 9.16 71.98 0.66 -3.54 16 10 C -0.09 -3.85 4.83 30.60 0.15 -3.70 16 11 C 0.05 2.70 4.86 29.85 0.15 2.84 16 12 C -0.54 -32.36 9.11 25.60 0.23 -32.13 16 13 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.92 -58.11 13.29 21.45 0.28 -57.82 16 16 Si 0.95 46.14 29.54 68.60 2.03 48.16 16 17 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 20 C -0.08 -2.50 4.69 -19.87 -0.09 -2.60 16 21 C -0.09 -3.68 9.25 22.27 0.21 -3.47 16 22 C -0.13 -5.23 10.05 22.27 0.22 -5.01 16 23 C -0.14 -4.50 9.70 22.27 0.22 -4.28 16 24 C -0.10 -2.90 5.88 -19.87 -0.12 -3.01 16 25 C -0.11 -2.14 10.01 71.23 0.71 -1.43 16 26 C -0.13 -3.75 9.33 22.27 0.21 -3.55 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.12 6.64 -2.39 -0.02 1.11 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.35 9.68 6.35 -89.69 -0.57 9.11 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.39 7.29 -2.39 -0.02 1.37 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.01 0.68 7.24 -2.39 -0.02 0.66 16 41 H -0.03 -2.10 8.14 -2.39 -0.02 -2.12 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.10 4.54 7.27 -2.91 -0.02 4.52 16 44 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 45 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 48 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 49 H 0.14 3.16 8.04 -2.91 -0.02 3.13 16 Total: -1.00 -68.84 389.44 4.61 -64.23 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.31 Total: 27.16 kcal Atomic # 6 Polarization: -62.14 SS G_CDS: 4.23 Total: -57.90 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.96 Total: -81.65 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -68.84 4.61 -64.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.498 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds