Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 H 1.09002 * 109.46838 * 303.98723 * 3 2 1 5 5 N 1.46895 * 109.47187 * 63.99168 * 3 2 1 6 6 C 1.46906 * 110.99493 * 212.74541 * 5 3 2 7 7 H 1.08997 * 109.47368 * 322.49525 * 6 5 3 8 8 C 1.53002 * 109.47258 * 82.49799 * 6 5 3 9 9 C 1.53008 * 109.46751 * 202.49659 * 6 5 3 10 10 C 1.52995 * 109.47234 * 65.00024 * 9 6 5 11 11 C 1.50697 * 109.47220 * 179.97438 * 10 9 6 12 12 H 1.08000 * 119.99995 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00016 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99644 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00109 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47131 * 59.99924 * 15 13 11 17 17 H 1.48498 * 109.47353 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47064 * 300.00109 * 15 13 11 19 19 C 1.50698 * 109.47002 * 183.99044 * 3 2 1 20 20 C 1.38255 * 120.00045 * 270.16756 * 19 3 2 21 21 C 1.38214 * 120.00136 * 179.97438 * 20 19 3 22 22 C 1.50699 * 120.00195 * 180.02562 * 21 20 19 23 23 C 1.38258 * 119.99858 * 359.97438 * 21 20 19 24 24 C 1.38208 * 120.00471 * 359.97438 * 23 21 20 25 25 C 1.38216 * 120.00109 * 89.88769 * 19 3 2 26 26 C 1.50696 * 120.00219 * 0.02562 * 25 19 3 27 27 H 1.08994 * 109.47903 * 64.85106 * 1 2 3 28 28 H 1.09002 * 109.47251 * 184.85547 * 1 2 3 29 29 H 1.09009 * 109.46982 * 304.85243 * 1 2 3 30 30 H 1.09004 * 109.47023 * 239.99962 * 2 1 3 31 31 H 1.08999 * 109.47408 * 119.99849 * 2 1 3 32 32 H 1.00893 * 111.00222 * 88.79528 * 5 3 2 33 33 H 1.08990 * 109.46863 * 294.98794 * 8 6 5 34 34 H 1.09001 * 109.46970 * 174.98574 * 8 6 5 35 35 H 1.09003 * 109.46550 * 54.98759 * 8 6 5 36 36 H 1.09000 * 109.46901 * 184.99980 * 9 6 5 37 37 H 1.09002 * 109.47010 * 304.99786 * 9 6 5 38 38 H 1.09004 * 109.46964 * 300.00279 * 10 9 6 39 39 H 1.09006 * 109.47147 * 59.99469 * 10 9 6 40 40 H 0.97004 * 119.99575 * 180.02562 * 14 13 11 41 41 H 1.07999 * 120.00223 * 0.02562 * 20 19 3 42 42 H 1.08998 * 109.47278 * 89.99911 * 22 21 20 43 43 H 1.09001 * 109.47347 * 210.00344 * 22 21 20 44 44 H 1.09002 * 109.46516 * 329.99952 * 22 21 20 45 45 H 1.08002 * 119.99571 * 180.02562 * 23 21 20 46 46 H 1.08000 * 120.00436 * 180.02562 * 24 23 21 47 47 H 1.08994 * 109.47798 * 89.98853 * 26 25 19 48 48 H 1.09002 * 109.47558 * 209.99681 * 26 25 19 49 49 H 1.09006 * 109.46790 * 329.99152 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6193 1.9765 -0.8521 5 7 1.6305 2.1066 1.2447 6 6 1.3767 3.5360 1.0198 7 1 2.1020 3.9259 0.3057 8 6 -0.0367 3.7217 0.4640 9 6 1.5074 4.2916 2.3438 10 6 2.9534 4.2100 2.8369 11 6 3.0824 4.9548 4.1406 12 1 2.2192 5.4377 4.5743 13 6 4.3024 5.0198 4.7798 14 7 5.3534 4.4313 4.2518 15 14 4.4621 5.9423 6.3961 16 1 3.5602 5.3318 7.4057 17 1 5.8656 5.8632 6.8747 18 1 4.0872 7.3648 6.1933 19 6 3.5436 1.4437 -0.0989 20 6 4.3120 1.4130 1.0501 21 6 5.6911 1.4136 0.9594 22 6 6.5287 1.3795 2.2118 23 6 6.3024 1.4443 -0.2803 24 6 5.5344 1.4740 -1.4290 25 6 4.1547 1.4697 -1.3383 26 6 3.3173 1.4974 -2.5909 27 1 -0.3635 0.4367 -0.9302 28 1 -0.3634 -1.0240 0.0870 29 1 -0.3633 0.5873 0.8434 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3187 1.9714 1.9699 33 1 -0.1036 3.2588 -0.5205 34 1 -0.2574 4.7859 0.3809 35 1 -0.7557 3.2528 1.1357 36 1 1.2328 5.3359 2.1948 37 1 0.8450 3.8439 3.0846 38 1 3.2281 3.1657 2.9859 39 1 3.6159 4.6578 2.0960 40 1 6.2116 4.4767 4.7017 41 1 3.8346 1.3877 2.0185 42 1 6.7292 0.3440 2.4867 43 1 7.4711 1.8970 2.0328 44 1 5.9913 1.8729 3.0217 45 1 7.3801 1.4443 -0.3511 46 1 6.0118 1.4976 -2.3974 47 1 3.1162 2.5314 -2.8708 48 1 3.8548 1.0003 -3.3984 49 1 2.3750 0.9803 -2.4094 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -10.756592 kcal Electronic energy + Delta-G solvation = -24410.515181 eV Core-core repulsion = 21335.870447 eV Total energy + Delta-G solvation = -3074.644734 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83504 -37.24390 -34.72541 -33.25868 -32.67548 -30.98461 -29.78435 -29.06673 -28.38647 -25.62005 -24.86712 -24.33020 -22.24353 -21.53564 -20.47548 -19.63491 -19.42631 -16.44188 -15.90851 -15.77488 -14.79246 -14.68091 -14.52286 -14.30871 -14.07561 -13.73614 -13.40998 -12.92524 -12.86446 -12.53602 -12.44605 -12.38109 -12.37564 -12.01754 -11.78493 -11.62709 -11.46504 -11.31232 -11.22546 -11.15127 -10.93288 -10.80864 -10.66529 -10.54689 -10.41370 -10.31506 -10.12950 -9.71707 -9.23474 -8.98963 -8.38615 -8.31814 -7.99743 -7.94024 -5.97824 -3.99153 1.69783 1.77142 3.33864 3.38123 3.41188 4.06858 4.47387 4.61690 4.92209 5.08446 5.18022 5.30898 5.37650 5.39659 5.43817 5.45380 5.59836 5.62299 5.70617 5.76359 5.83722 5.85369 5.93345 5.94709 5.99356 6.05085 6.12969 6.15134 6.17798 6.23801 6.36165 6.39665 6.41593 6.50517 6.54669 6.58940 6.63954 6.77735 6.81049 6.93154 6.97031 7.09561 7.14401 7.41309 7.60739 7.66738 7.85344 7.95835 8.02563 8.45694 9.06190 9.64120 11.12322 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.005852 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.088868 B = 4783.366481 C = 6210.527742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C 0.125 3.875 4 H 0.080 0.920 5 N -0.678 5.678 6 C 0.083 3.917 7 H 0.036 0.964 8 C -0.136 4.136 9 C -0.115 4.115 10 C 0.025 3.975 11 C -0.520 4.520 12 H 0.052 0.948 13 C 0.060 3.940 14 N -0.889 5.889 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.105 4.105 20 C -0.100 4.100 21 C -0.067 4.067 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.096 4.096 26 C -0.113 4.113 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.352 0.648 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.126 0.874 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 -8.713 -11.821 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C 0.015 3.985 4 H 0.098 0.902 5 N -0.314 5.314 6 C -0.026 4.026 7 H 0.054 0.946 8 C -0.194 4.194 9 C -0.153 4.153 10 C -0.012 4.012 11 C -0.558 4.558 12 H 0.071 0.929 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.067 4.067 22 C -0.174 4.174 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.096 4.096 26 C -0.170 4.170 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.178 0.822 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.068 0.932 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.853 -8.913 -11.822 15.298 hybrid contribution 1.323 0.992 0.796 1.835 sum -2.530 -7.921 -11.025 13.809 Atomic orbital electron populations 1.21674 0.95447 1.00682 1.02195 1.21457 0.96207 0.95128 1.01361 1.20610 0.88299 0.95660 0.93941 0.90169 1.60847 1.50756 1.12284 1.07527 1.21586 0.95395 0.87591 0.98061 0.94624 1.21818 0.97362 1.00304 0.99902 1.21826 1.01124 0.98195 0.94157 1.19099 0.89686 0.96691 0.95694 1.21195 0.94756 1.33381 1.06461 0.92945 1.24969 0.96022 0.95679 0.97453 1.69938 1.00007 1.43903 1.38980 0.86728 0.76881 0.80462 0.84309 1.20349 1.21393 1.20434 1.20484 0.96871 1.00479 0.92789 1.20905 0.93282 0.99557 0.98127 1.19905 0.94004 0.97657 0.95139 1.20842 0.99509 1.01081 0.96016 1.20963 0.99299 1.02017 0.92189 1.20873 0.93208 1.01885 0.97954 1.19602 0.93795 1.01883 0.94369 1.20789 0.99392 1.01960 0.94830 0.93790 0.93823 0.90924 0.92519 0.91957 0.82250 0.93945 0.93126 0.92298 0.92931 0.92573 0.96672 0.97064 0.93161 0.85642 0.92302 0.92112 0.89004 0.86701 0.86816 0.91646 0.92041 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.85 37.16 0.37 -1.31 16 2 C -0.10 -1.33 5.43 -26.73 -0.15 -1.48 16 3 C 0.13 1.84 1.33 -68.87 -0.09 1.75 16 4 H 0.08 1.15 5.55 -51.93 -0.29 0.86 16 5 N -0.68 -11.26 5.39 -100.95 -0.54 -11.81 16 6 C 0.08 1.46 2.47 -67.70 -0.17 1.29 16 7 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 8 C -0.14 -2.00 9.34 37.16 0.35 -1.65 16 9 C -0.12 -2.38 4.76 -26.73 -0.13 -2.51 16 10 C 0.03 0.64 4.80 -27.89 -0.13 0.50 16 11 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.10 -1.68 5.02 -104.62 -0.52 -2.20 16 20 C -0.10 -1.79 8.73 -39.58 -0.35 -2.14 16 21 C -0.07 -1.17 5.88 -104.62 -0.62 -1.78 16 22 C -0.12 -2.00 10.01 36.01 0.36 -1.64 16 23 C -0.13 -1.97 9.70 -39.59 -0.38 -2.36 16 24 C -0.12 -1.76 9.70 -39.58 -0.38 -2.14 16 25 C -0.10 -1.41 5.88 -104.62 -0.62 -2.02 16 26 C -0.11 -1.31 9.19 36.00 0.33 -0.98 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.96 7.59 -51.92 -0.39 0.56 16 30 H 0.06 0.67 7.48 -51.93 -0.39 0.29 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.35 6.56 3.73 -39.30 -0.15 6.41 16 33 H 0.04 0.56 7.43 -51.93 -0.39 0.18 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.39 5.60 -51.93 -0.29 0.10 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.13 2.39 5.28 -52.49 -0.28 2.11 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 44 H 0.09 1.85 8.09 -51.93 -0.42 1.43 16 45 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 49 H 0.07 0.73 5.90 -51.93 -0.31 0.42 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -28.25 380.50 -10.40 -38.65 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.76 Total: 7.46 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: -2.54 Total: -31.88 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.19 Total: -36.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.25 -10.40 -38.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.894 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds