Wall clock time and date at job start Tue Mar 31 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 H 1.09002 * 109.46838 * 303.98723 * 3 2 1 5 5 N 1.46895 * 109.47187 * 63.99168 * 3 2 1 6 6 C 1.46906 * 110.99493 * 212.74541 * 5 3 2 7 7 H 1.08997 * 109.47368 * 322.49525 * 6 5 3 8 8 C 1.53002 * 109.47258 * 82.49799 * 6 5 3 9 9 C 1.53008 * 109.46751 * 202.49659 * 6 5 3 10 10 C 1.52995 * 109.47234 * 65.00024 * 9 6 5 11 11 C 1.50697 * 109.47220 * 179.97438 * 10 9 6 12 12 H 1.08000 * 119.99995 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00016 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99644 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00109 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47131 * 59.99924 * 15 13 11 17 17 H 1.48498 * 109.47353 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47064 * 300.00109 * 15 13 11 19 19 C 1.50698 * 109.47002 * 183.99044 * 3 2 1 20 20 C 1.38255 * 120.00045 * 270.16756 * 19 3 2 21 21 C 1.38214 * 120.00136 * 179.97438 * 20 19 3 22 22 C 1.50699 * 120.00195 * 180.02562 * 21 20 19 23 23 C 1.38258 * 119.99858 * 359.97438 * 21 20 19 24 24 C 1.38208 * 120.00471 * 359.97438 * 23 21 20 25 25 C 1.38216 * 120.00109 * 89.88769 * 19 3 2 26 26 C 1.50696 * 120.00219 * 0.02562 * 25 19 3 27 27 H 1.08994 * 109.47903 * 64.85106 * 1 2 3 28 28 H 1.09002 * 109.47251 * 184.85547 * 1 2 3 29 29 H 1.09009 * 109.46982 * 304.85243 * 1 2 3 30 30 H 1.09004 * 109.47023 * 239.99962 * 2 1 3 31 31 H 1.08999 * 109.47408 * 119.99849 * 2 1 3 32 32 H 1.00893 * 111.00222 * 88.79528 * 5 3 2 33 33 H 1.08990 * 109.46863 * 294.98794 * 8 6 5 34 34 H 1.09001 * 109.46970 * 174.98574 * 8 6 5 35 35 H 1.09003 * 109.46550 * 54.98759 * 8 6 5 36 36 H 1.09000 * 109.46901 * 184.99980 * 9 6 5 37 37 H 1.09002 * 109.47010 * 304.99786 * 9 6 5 38 38 H 1.09004 * 109.46964 * 300.00279 * 10 9 6 39 39 H 1.09006 * 109.47147 * 59.99469 * 10 9 6 40 40 H 0.97004 * 119.99575 * 180.02562 * 14 13 11 41 41 H 1.07999 * 120.00223 * 0.02562 * 20 19 3 42 42 H 1.08998 * 109.47278 * 89.99911 * 22 21 20 43 43 H 1.09001 * 109.47347 * 210.00344 * 22 21 20 44 44 H 1.09002 * 109.46516 * 329.99952 * 22 21 20 45 45 H 1.08002 * 119.99571 * 180.02562 * 23 21 20 46 46 H 1.08000 * 120.00436 * 180.02562 * 24 23 21 47 47 H 1.08994 * 109.47798 * 89.98853 * 26 25 19 48 48 H 1.09002 * 109.47558 * 209.99681 * 26 25 19 49 49 H 1.09006 * 109.46790 * 329.99152 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6193 1.9765 -0.8521 5 7 1.6305 2.1066 1.2447 6 6 1.3767 3.5360 1.0198 7 1 2.1020 3.9259 0.3057 8 6 -0.0367 3.7217 0.4640 9 6 1.5074 4.2916 2.3438 10 6 2.9534 4.2100 2.8369 11 6 3.0824 4.9548 4.1406 12 1 2.2192 5.4377 4.5743 13 6 4.3024 5.0198 4.7798 14 7 5.3534 4.4313 4.2518 15 14 4.4621 5.9423 6.3961 16 1 3.5602 5.3318 7.4057 17 1 5.8656 5.8632 6.8747 18 1 4.0872 7.3648 6.1933 19 6 3.5436 1.4437 -0.0989 20 6 4.3120 1.4130 1.0501 21 6 5.6911 1.4136 0.9594 22 6 6.5287 1.3795 2.2118 23 6 6.3024 1.4443 -0.2803 24 6 5.5344 1.4740 -1.4290 25 6 4.1547 1.4697 -1.3383 26 6 3.3173 1.4974 -2.5909 27 1 -0.3635 0.4367 -0.9302 28 1 -0.3634 -1.0240 0.0870 29 1 -0.3633 0.5873 0.8434 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3187 1.9714 1.9699 33 1 -0.1036 3.2588 -0.5205 34 1 -0.2574 4.7859 0.3809 35 1 -0.7557 3.2528 1.1357 36 1 1.2328 5.3359 2.1948 37 1 0.8450 3.8439 3.0846 38 1 3.2281 3.1657 2.9859 39 1 3.6159 4.6578 2.0960 40 1 6.2116 4.4767 4.7017 41 1 3.8346 1.3877 2.0185 42 1 6.7292 0.3440 2.4867 43 1 7.4711 1.8970 2.0328 44 1 5.9913 1.8729 3.0217 45 1 7.3801 1.4443 -0.3511 46 1 6.0118 1.4976 -2.3974 47 1 3.1162 2.5314 -2.8708 48 1 3.8548 1.0003 -3.3984 49 1 2.3750 0.9803 -2.4094 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:07 Heat of formation + Delta-G solvation = -23.466657 kcal Electronic energy + Delta-G solvation = -24411.066331 eV Core-core repulsion = 21335.870447 eV Total energy + Delta-G solvation = -3075.195884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06091 -38.60023 -36.20090 -34.81371 -34.25175 -32.14669 -31.54042 -30.28540 -29.65927 -27.12345 -26.45507 -25.50530 -23.52858 -23.15579 -21.75769 -20.98071 -20.83930 -18.47528 -17.21173 -17.13571 -16.53852 -16.02732 -15.96526 -15.57150 -15.28742 -14.96760 -14.64454 -14.48938 -14.18870 -14.05395 -13.85160 -13.66299 -13.54598 -13.40684 -13.11232 -12.90690 -12.83308 -12.81235 -12.69452 -12.50554 -12.41194 -12.33572 -12.11705 -11.81865 -11.76708 -11.60215 -11.53312 -11.41888 -11.24294 -10.88144 -10.49295 -9.62950 -9.29874 -9.21389 -8.13802 -6.24205 0.46900 0.52519 1.39124 1.40837 1.48332 2.41927 2.83409 3.16790 3.30693 3.75889 3.91077 4.02718 4.12047 4.15728 4.27175 4.32696 4.40513 4.44276 4.48301 4.54293 4.67074 4.70152 4.77118 4.78934 4.80928 4.84521 4.88417 4.96173 5.00819 5.05513 5.07217 5.11969 5.19140 5.22969 5.25906 5.29627 5.39649 5.43437 5.48002 5.55920 5.56858 5.65356 5.70295 5.76569 5.81435 5.88975 6.19354 6.29730 6.33741 6.47890 6.89264 7.42995 8.95051 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.005852 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.088868 B = 4783.366481 C = 6210.527742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 C 0.129 3.871 4 H 0.091 0.909 5 N -0.677 5.677 6 C 0.091 3.909 7 H 0.017 0.983 8 C -0.126 4.126 9 C -0.105 4.105 10 C 0.040 3.960 11 C -0.548 4.548 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.095 4.095 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.099 4.099 26 C -0.111 4.111 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.338 0.662 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.001 0.999 39 H -0.026 1.026 40 H 0.260 0.740 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.135 0.865 46 H 0.146 0.854 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -9.005 -13.686 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 C 0.019 3.981 4 H 0.109 0.891 5 N -0.311 5.311 6 C -0.019 4.019 7 H 0.035 0.965 8 C -0.184 4.184 9 C -0.143 4.143 10 C 0.003 3.997 11 C -0.586 4.586 12 H 0.071 0.929 13 C -0.189 4.189 14 N -0.552 5.552 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.116 4.116 20 C -0.142 4.142 21 C -0.095 4.095 22 C -0.165 4.165 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.100 4.100 26 C -0.167 4.167 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.019 0.981 39 H -0.007 1.007 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.152 0.848 46 H 0.164 0.836 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.764 -9.207 -13.698 17.179 hybrid contribution 1.652 1.064 1.355 2.387 sum -3.112 -8.143 -12.343 15.111 Atomic orbital electron populations 1.21622 0.94218 1.01421 1.02193 1.21427 0.97160 0.93655 1.01383 1.20711 0.87642 0.96673 0.93079 0.89114 1.60958 1.50267 1.11623 1.08244 1.21484 0.97081 0.87688 0.95644 0.96465 1.21727 0.94771 1.01181 1.00729 1.21673 0.97845 0.98844 0.95944 1.18882 0.91789 0.95083 0.93980 1.21594 0.95109 1.34146 1.07754 0.92938 1.25809 0.95713 0.96461 1.00949 1.70081 1.00349 1.44468 1.40259 0.85674 0.77064 0.79241 0.80049 1.19545 1.20846 1.19747 1.20673 0.97528 1.00509 0.92879 1.20839 0.93900 1.01573 0.97881 1.20065 0.94040 0.99300 0.96070 1.20708 0.99052 1.01824 0.94916 1.21223 1.00544 1.01552 0.91746 1.21288 0.93286 1.00430 0.98899 1.20046 0.94517 1.00367 0.95034 1.20851 0.99491 1.02711 0.93673 0.92368 0.92481 0.92552 0.90907 0.93513 0.83903 0.91949 0.92292 0.91971 0.92912 0.92705 0.98055 1.00719 0.93076 0.88287 0.90395 0.91586 0.93156 0.84758 0.83583 0.91136 0.89725 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.85 71.98 0.71 -2.23 16 2 C -0.10 -2.41 5.43 30.59 0.17 -2.24 16 3 C 0.13 3.70 1.33 44.17 0.06 3.76 16 4 H 0.09 2.41 5.55 -2.39 -0.01 2.40 16 5 N -0.68 -22.94 5.39 -473.29 -2.55 -25.49 16 6 C 0.09 3.21 2.47 44.92 0.11 3.32 16 7 H 0.02 0.67 7.89 -2.39 -0.02 0.65 16 8 C -0.13 -3.48 9.34 71.98 0.67 -2.81 16 9 C -0.11 -4.48 4.76 30.60 0.15 -4.34 16 10 C 0.04 2.11 4.80 29.85 0.14 2.25 16 11 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 12 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 13 C 0.01 0.57 5.46 84.66 0.46 1.03 16 14 N -0.91 -54.12 13.29 21.45 0.28 -53.84 16 15 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 C -0.11 -3.69 5.02 -19.87 -0.10 -3.79 16 20 C -0.12 -4.68 8.73 22.27 0.19 -4.48 16 21 C -0.09 -3.45 5.88 -19.87 -0.12 -3.57 16 22 C -0.11 -3.93 10.01 71.24 0.71 -3.21 16 23 C -0.13 -4.08 9.70 22.27 0.22 -3.86 16 24 C -0.12 -3.28 9.70 22.27 0.22 -3.07 16 25 C -0.10 -2.75 5.88 -19.86 -0.12 -2.86 16 26 C -0.11 -2.19 9.19 71.23 0.65 -1.54 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.40 7.59 -2.38 -0.02 1.38 16 30 H 0.07 1.56 7.48 -2.38 -0.02 1.54 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.34 13.43 3.73 -89.70 -0.33 13.09 16 33 H 0.06 1.48 7.43 -2.39 -0.02 1.46 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.00 0.07 5.60 -2.38 -0.01 0.06 16 39 H -0.03 -1.52 8.14 -2.38 -0.02 -1.54 16 40 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.10 4.19 5.28 -2.91 -0.02 4.18 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.07 2.23 8.09 -2.39 -0.02 2.22 16 44 H 0.05 2.22 8.09 -2.39 -0.02 2.20 16 45 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 46 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 47 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 49 H 0.08 1.37 5.90 -2.38 -0.01 1.36 16 Total: -1.00 -63.46 380.50 4.69 -58.77 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.57 Total: 32.76 kcal Atomic # 6 Polarization: -63.33 SS G_CDS: 4.36 Total: -58.97 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.27 Total: -79.33 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.46 4.69 -58.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.302 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds