Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 H 1.09004 * 109.47142 * 179.15736 * 3 2 1 5 5 N 1.46904 * 109.47353 * 299.15304 * 3 2 1 6 6 C 1.46895 * 110.99938 * 275.26840 * 5 3 2 7 7 H 1.09001 * 109.47744 * 34.94956 * 6 5 3 8 8 C 1.52998 * 109.47131 * 274.95052 * 6 5 3 9 9 C 1.53006 * 109.47344 * 154.95190 * 6 5 3 10 10 C 1.52994 * 109.46894 * 294.99860 * 9 6 5 11 11 C 1.50699 * 109.47147 * 179.97438 * 10 9 6 12 12 H 1.08001 * 119.99827 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00266 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99692 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 119.99777 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47238 * 90.00490 * 15 13 11 17 17 H 1.48504 * 109.47208 * 210.00384 * 15 13 11 18 18 H 1.48503 * 109.47332 * 330.00338 * 15 13 11 19 19 C 1.50698 * 109.47353 * 59.15479 * 3 2 1 20 20 C 1.38265 * 119.99922 * 264.72578 * 19 3 2 21 21 C 1.38216 * 119.99788 * 179.80930 * 20 19 3 22 22 C 1.50693 * 119.99712 * 180.20974 * 21 20 19 23 23 C 1.38251 * 119.99924 * 0.41940 * 21 20 19 24 24 C 1.38215 * 120.00159 * 359.81483 * 23 21 20 25 25 C 1.38207 * 120.00119 * 85.00013 * 19 3 2 26 26 C 1.50698 * 119.99990 * 359.97438 * 25 19 3 27 27 H 1.08997 * 109.47560 * 53.66693 * 1 2 3 28 28 H 1.09003 * 109.46751 * 293.66762 * 1 2 3 29 29 H 1.09002 * 109.46991 * 173.67342 * 1 2 3 30 30 H 1.09002 * 109.47387 * 119.99877 * 2 1 3 31 31 H 1.08998 * 109.46943 * 240.00181 * 2 1 3 32 32 H 1.00895 * 111.00381 * 151.30594 * 5 3 2 33 33 H 1.09002 * 109.47402 * 300.00202 * 8 6 5 34 34 H 1.09000 * 109.46951 * 59.99811 * 8 6 5 35 35 H 1.08994 * 109.47753 * 180.02562 * 8 6 5 36 36 H 1.08999 * 109.46981 * 54.99776 * 9 6 5 37 37 H 1.09003 * 109.46966 * 174.99756 * 9 6 5 38 38 H 1.08999 * 109.47237 * 299.99759 * 10 9 6 39 39 H 1.09003 * 109.47399 * 60.00161 * 10 9 6 40 40 H 0.97002 * 119.99533 * 179.97438 * 14 13 11 41 41 H 1.07997 * 119.99587 * 359.97438 * 20 19 3 42 42 H 1.09003 * 109.47287 * 270.21197 * 22 21 20 43 43 H 1.09002 * 109.47599 * 30.20837 * 22 21 20 44 44 H 1.09003 * 109.47011 * 150.20979 * 22 21 20 45 45 H 1.08000 * 119.99679 * 179.78860 * 23 21 20 46 46 H 1.08000 * 120.00035 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.47273 * 90.00406 * 26 25 19 48 48 H 1.09004 * 109.47304 * 210.00116 * 26 25 19 49 49 H 1.08998 * 109.47159 * 329.99886 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0151 5 7 1.5671 2.1291 -1.2096 6 6 2.4632 1.8726 -2.3449 7 1 2.8541 0.8573 -2.2771 8 6 3.6238 2.8690 -2.3138 9 6 1.6873 2.0340 -3.6537 10 6 0.6048 0.9564 -3.7410 11 6 -0.1599 1.1158 -5.0298 12 1 0.1001 1.9068 -5.7176 13 6 -1.1920 0.2523 -5.3304 14 7 -1.8588 0.3912 -6.4554 15 14 -1.6420 -1.1154 -4.1405 16 1 -2.6643 -0.6221 -3.1830 17 1 -2.1890 -2.2700 -4.8974 18 1 -0.4304 -1.5415 -3.3950 19 6 1.5206 2.1590 1.2198 20 6 0.3695 2.9204 1.1365 21 6 -0.1090 3.5743 2.2563 22 6 -1.3662 4.4003 2.1666 23 6 0.5681 3.4740 3.4574 24 6 1.7215 2.7168 3.5395 25 6 2.1980 2.0596 2.4204 26 6 3.4557 1.2342 2.5098 27 1 -0.3634 0.6088 -0.8278 28 1 -0.3633 0.4126 0.9413 29 1 -0.3633 -1.0214 -0.1132 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.4644 3.1195 -1.0465 33 1 3.2330 3.8843 -2.3816 34 1 4.1765 2.7540 -1.3814 35 1 4.2885 2.6790 -3.1565 36 1 1.2222 3.0194 -3.6812 37 1 2.3710 1.9313 -4.4964 38 1 1.0699 -0.0290 -3.7136 39 1 -0.0790 1.0591 -2.8983 40 1 -2.5847 -0.2165 -6.6671 41 1 -0.1571 3.0020 0.1972 42 1 -1.1093 5.4250 1.8982 43 1 -2.0240 3.9796 1.4061 44 1 -1.8747 4.3938 3.1308 45 1 0.1960 3.9878 4.3315 46 1 2.2506 2.6389 4.4777 47 1 4.3184 1.8610 2.2841 48 1 3.5541 0.8298 3.5172 49 1 3.4043 0.4149 1.7928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -7.156214 kcal Electronic energy + Delta-G solvation = -24093.014404 eV Core-core repulsion = 21018.525794 eV Total energy + Delta-G solvation = -3074.488610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13751 -37.58002 -34.82018 -33.56374 -32.67500 -30.84164 -30.26896 -29.40868 -28.59398 -25.79638 -25.09714 -24.79206 -22.43995 -21.71451 -20.65809 -19.62610 -19.27392 -16.58070 -16.31598 -15.95658 -15.27970 -14.83857 -14.54143 -14.29899 -14.08596 -13.98472 -13.49831 -13.29598 -12.94705 -12.91171 -12.74881 -12.64698 -12.56038 -12.44769 -12.23864 -11.99136 -11.61335 -11.47404 -11.40300 -11.33852 -11.03849 -10.98784 -10.84454 -10.64626 -10.34555 -10.28623 -9.80221 -9.57307 -9.44176 -8.98372 -8.71753 -8.40688 -8.39720 -7.98141 -5.92466 -3.88066 1.31344 1.41101 3.40702 3.47143 3.53430 3.69785 4.36453 4.57327 4.67635 4.77897 4.83571 5.03215 5.10806 5.20179 5.32636 5.37430 5.41250 5.43599 5.45834 5.47955 5.53460 5.56204 5.58412 5.65244 5.69800 5.81207 5.85806 5.88060 6.02930 6.11746 6.14662 6.19852 6.23465 6.32789 6.35373 6.42560 6.50827 6.54587 6.61467 6.66536 6.76665 6.86923 7.03880 7.14783 7.41761 7.57598 7.71899 7.78484 7.97082 8.68452 9.14317 9.72084 11.21535 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.004656 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.991434 B = 6011.711689 C = 6447.719839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C 0.127 3.873 4 H 0.050 0.950 5 N -0.667 5.667 6 C 0.081 3.919 7 H 0.072 0.928 8 C -0.180 4.180 9 C -0.089 4.089 10 C -0.005 4.005 11 C -0.516 4.516 12 H 0.067 0.933 13 C 0.064 3.936 14 N -0.910 5.910 15 Si 0.879 3.121 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.263 1.263 19 C -0.073 4.073 20 C -0.100 4.100 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.090 4.090 26 C -0.118 4.118 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.339 0.661 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.137 0.863 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 4.908 21.257 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C 0.017 3.983 4 H 0.068 0.932 5 N -0.299 5.299 6 C -0.028 4.028 7 H 0.090 0.910 8 C -0.239 4.239 9 C -0.127 4.127 10 C -0.042 4.042 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.136 4.136 14 N -0.550 5.550 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.219 1.219 18 H -0.188 1.188 19 C -0.074 4.074 20 C -0.118 4.118 21 C -0.093 4.093 22 C -0.171 4.171 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.091 4.091 26 C -0.175 4.175 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.154 0.846 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.448 4.326 20.974 23.022 hybrid contribution 0.421 -0.186 0.808 0.930 sum 8.869 4.140 21.782 23.880 Atomic orbital electron populations 1.21731 0.95048 1.01183 1.02458 1.21476 0.97565 0.94268 1.00978 1.20448 0.96479 0.94298 0.87083 0.93226 1.60664 1.50460 1.15317 1.03452 1.21799 0.90632 0.98034 0.92368 0.90967 1.22515 0.99775 1.00453 1.01115 1.21437 0.97776 1.00771 0.92712 1.19472 0.94199 0.93378 0.97140 1.21279 1.15083 1.15192 1.03815 0.91483 1.25015 0.96031 0.97485 0.95053 1.69935 1.22591 1.38610 1.23882 0.86788 0.79160 0.81993 0.81400 1.20341 1.21931 1.18799 1.19803 0.95525 0.97591 0.94439 1.21082 0.95770 0.96207 0.98732 1.19924 0.97213 0.98573 0.93544 1.20784 0.94637 0.99141 1.02536 1.20950 0.95987 1.00042 0.97278 1.20899 0.96823 0.98358 0.97777 1.19683 0.97225 0.99001 0.93159 1.20855 0.94792 0.99245 1.02562 0.90176 0.93600 0.94007 0.92651 0.91568 0.84186 0.92697 0.93760 0.92182 0.92942 0.93001 0.97592 0.95346 0.93025 0.84570 0.91328 0.91222 0.91924 0.86598 0.86537 0.91514 0.91815 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.12 37.16 0.34 -1.96 16 2 C -0.10 -1.47 5.59 -26.73 -0.15 -1.62 16 3 C 0.13 1.65 1.65 -68.86 -0.11 1.53 16 4 H 0.05 0.62 5.97 -51.93 -0.31 0.31 16 5 N -0.67 -9.73 3.93 -100.95 -0.40 -10.13 16 6 C 0.08 1.25 2.40 -67.71 -0.16 1.09 16 7 H 0.07 1.15 7.09 -51.93 -0.37 0.78 16 8 C -0.18 -2.31 9.15 37.16 0.34 -1.97 16 9 C -0.09 -1.74 4.83 -26.73 -0.13 -1.87 16 10 C 0.00 -0.11 3.93 -27.89 -0.11 -0.22 16 11 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 12 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.80 13.96 55.43 0.77 -28.03 16 15 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 19 C -0.07 -0.91 4.17 -104.62 -0.44 -1.35 16 20 C -0.10 -1.27 7.31 -39.58 -0.29 -1.56 16 21 C -0.09 -1.06 5.88 -104.63 -0.62 -1.68 16 22 C -0.11 -1.10 10.01 36.00 0.36 -0.73 16 23 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16 24 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 25 C -0.09 -1.02 5.88 -104.63 -0.62 -1.64 16 26 C -0.12 -1.09 9.22 36.00 0.33 -0.76 16 27 H 0.08 1.44 6.45 -51.93 -0.34 1.11 16 28 H 0.04 0.67 6.86 -51.93 -0.36 0.32 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.68 6.89 -51.93 -0.36 0.33 16 31 H 0.07 1.00 7.40 -51.93 -0.38 0.62 16 32 H 0.34 4.68 7.00 -39.29 -0.28 4.41 16 33 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.04 0.52 7.43 -51.93 -0.39 0.13 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.14 7.20 -51.93 -0.37 -0.23 16 39 H 0.03 0.68 6.19 -51.93 -0.32 0.36 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 41 H 0.14 1.85 6.96 -52.49 -0.37 1.48 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 44 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 49 H 0.07 0.68 5.42 -51.93 -0.28 0.39 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -31.14 374.28 -9.86 -41.00 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.76 Total: 3.28 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.45 Total: -29.59 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.38 Total: -38.16 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.14 -9.86 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.845 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds