Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 C 1.53004 * 109.46829 * 183.19753 * 3 2 1 5 5 H 1.09001 * 109.47275 * 304.85503 * 4 3 2 6 6 N 1.46898 * 109.46964 * 64.85670 * 4 3 2 7 7 C 1.46907 * 110.99780 * 202.63428 * 6 4 3 8 8 H 1.08997 * 109.47027 * 322.66569 * 7 6 4 9 9 C 1.52997 * 109.47071 * 82.66489 * 7 6 4 10 10 C 1.53005 * 109.46901 * 202.66443 * 7 6 4 11 11 C 1.53004 * 109.47038 * 65.00097 * 10 7 6 12 12 C 1.50696 * 109.46764 * 180.02562 * 11 10 7 13 13 H 1.07996 * 120.00180 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99848 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99915 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00278 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47098 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47145 * 119.99632 * 16 14 12 19 19 H 1.48499 * 109.47695 * 240.00065 * 16 14 12 20 20 C 1.50702 * 109.47003 * 184.85651 * 4 3 2 21 21 C 1.38242 * 119.99351 * 279.72654 * 20 4 3 22 22 C 1.38236 * 119.99417 * 179.78587 * 21 20 4 23 23 C 1.38237 * 119.99956 * 0.46912 * 22 21 20 24 24 C 1.50700 * 119.99668 * 179.78869 * 23 22 21 25 25 C 1.38233 * 120.00256 * 359.76225 * 23 22 21 26 26 C 1.38231 * 120.00305 * 100.00217 * 20 4 3 27 27 H 1.08996 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.46950 * 299.99983 * 1 2 3 29 29 H 1.08998 * 109.47473 * 59.99510 * 1 2 3 30 30 H 1.08997 * 109.47011 * 239.99817 * 2 1 3 31 31 H 1.09006 * 109.47131 * 119.99950 * 2 1 3 32 32 H 1.09002 * 109.46924 * 63.19973 * 3 2 1 33 33 H 1.08994 * 109.47534 * 303.19733 * 3 2 1 34 34 H 1.00892 * 111.00417 * 78.67831 * 6 4 3 35 35 H 1.08998 * 109.47188 * 54.81310 * 9 7 6 36 36 H 1.09006 * 109.46681 * 174.81176 * 9 7 6 37 37 H 1.09007 * 109.47129 * 294.80656 * 9 7 6 38 38 H 1.09003 * 109.46551 * 184.99621 * 10 7 6 39 39 H 1.08996 * 109.46848 * 304.99830 * 10 7 6 40 40 H 1.09000 * 109.46679 * 299.99573 * 11 10 7 41 41 H 1.09004 * 109.47274 * 59.99539 * 11 10 7 42 42 H 0.97001 * 120.00114 * 180.02562 * 15 14 12 43 43 H 1.07996 * 120.00585 * 359.97438 * 21 20 4 44 44 H 1.07999 * 120.00066 * 180.25185 * 22 21 20 45 45 H 1.09002 * 109.47360 * 269.97315 * 24 23 22 46 46 H 1.09000 * 109.47509 * 29.97438 * 24 23 22 47 47 H 1.09001 * 109.47168 * 149.97792 * 24 23 22 48 48 H 1.07997 * 119.99979 * 180.02562 * 25 23 22 49 49 H 1.07999 * 119.99776 * 359.97438 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4432 -0.0805 5 1 3.9748 0.8405 0.7315 6 7 3.9906 0.8784 -1.3689 7 6 5.3656 0.3667 -1.2937 8 1 5.9644 1.0254 -0.6648 9 6 5.3541 -1.0403 -0.6930 10 6 5.9686 0.3164 -2.6990 11 6 6.0952 1.7379 -3.2509 12 6 6.6885 1.6882 -4.6352 13 1 6.9496 0.7380 -5.0771 14 6 6.8981 2.8560 -5.3377 15 7 6.5797 4.0131 -4.7998 16 14 7.6342 2.7946 -7.0534 17 1 7.9015 1.3824 -7.4271 18 1 6.6801 3.3905 -8.0230 19 1 8.9054 3.5619 -7.0745 20 6 4.0766 2.8567 0.0395 21 6 4.0580 3.6936 -1.0606 22 6 4.5205 4.9915 -0.9494 23 6 5.0105 5.4495 0.2593 24 6 5.5191 6.8630 0.3792 25 6 5.0336 4.6111 1.3581 26 6 4.5670 3.3145 1.2481 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7242 1.9395 0.9173 33 1 1.6306 1.9726 -0.8599 34 1 3.8974 1.5573 -2.1094 35 1 4.6820 -1.6760 -1.2695 36 1 6.3614 -1.4560 -0.7220 37 1 5.0108 -0.9914 0.3404 38 1 6.9550 -0.1453 -2.6548 39 1 5.3216 -0.2702 -3.3512 40 1 5.1088 2.1996 -3.2951 41 1 6.7422 2.3246 -2.5986 42 1 6.7267 4.8346 -5.2942 43 1 3.6793 3.3344 -2.0061 44 1 4.5022 5.6467 -1.8078 45 1 6.5838 6.8871 0.1467 46 1 4.9802 7.5036 -0.3189 47 1 5.3613 7.2209 1.3967 48 1 5.4160 4.9691 2.3025 49 1 4.5853 2.6594 2.1065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = -16.233689 kcal Electronic energy + Delta-G solvation = -23878.871208 eV Core-core repulsion = 20803.988969 eV Total energy + Delta-G solvation = -3074.882239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.59283 -37.32968 -35.06535 -33.18908 -32.65139 -30.80492 -30.50661 -29.21876 -27.59454 -26.27423 -25.01423 -22.80027 -22.37560 -21.40129 -20.85045 -19.79070 -19.42437 -16.60656 -16.01901 -15.76505 -14.84326 -14.67956 -14.57214 -14.50292 -14.34505 -13.58969 -13.36957 -13.19013 -13.03077 -12.94072 -12.51301 -12.43627 -12.14062 -12.01797 -11.86086 -11.67690 -11.53309 -11.27275 -11.17135 -11.04358 -10.93853 -10.82090 -10.56292 -10.48047 -10.42723 -10.35509 -10.11111 -9.72373 -9.23173 -8.97665 -8.52300 -8.33158 -8.16886 -7.91253 -5.98391 -3.99763 1.67057 1.79395 3.31153 3.39001 3.43328 4.09601 4.47350 4.62862 4.86323 5.09165 5.20761 5.22939 5.30039 5.36366 5.37660 5.41198 5.45848 5.59394 5.67348 5.76257 5.77854 5.80362 5.83741 5.91712 5.97637 6.01055 6.04445 6.07332 6.13003 6.23314 6.26216 6.40025 6.41676 6.43168 6.47293 6.55371 6.60030 6.63907 6.78099 6.94057 6.97271 6.98402 7.14021 7.38247 7.59792 7.67070 7.85548 7.95064 8.02425 8.45715 9.06760 9.63954 11.12226 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.005647 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.756653 B = 4956.850208 C = 6660.644828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.099 4.099 4 C 0.127 3.873 5 H 0.079 0.921 6 N -0.675 5.675 7 C 0.083 3.917 8 H 0.037 0.963 9 C -0.136 4.136 10 C -0.115 4.115 11 C 0.025 3.975 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.116 4.116 21 C -0.093 4.093 22 C -0.100 4.100 23 C -0.094 4.094 24 C -0.111 4.111 25 C -0.126 4.126 26 C -0.117 4.117 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.352 0.648 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.258 0.742 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.114 0.886 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 -1.347 13.297 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.137 4.137 4 C 0.016 3.984 5 H 0.097 0.903 6 N -0.310 5.310 7 C -0.027 4.027 8 H 0.055 0.945 9 C -0.194 4.194 10 C -0.153 4.153 11 C -0.012 4.012 12 C -0.556 4.556 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.094 4.094 24 C -0.168 4.168 25 C -0.144 4.144 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.175 0.825 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.132 0.868 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.133 -1.793 13.349 15.734 hybrid contribution 1.096 1.007 -0.988 1.786 sum -7.038 -0.786 12.361 14.246 Atomic orbital electron populations 1.21789 0.96802 1.01007 1.01301 1.21429 0.94494 0.96837 1.02617 1.21546 0.93728 0.97063 1.01406 1.20602 0.95063 0.89096 0.93611 0.90318 1.60849 1.23762 1.41462 1.04894 1.21563 0.88238 0.94750 0.98113 0.94477 1.21805 1.00792 0.97164 0.99606 1.21821 0.98995 1.01267 0.93174 1.19100 0.96589 0.90085 0.95437 1.21284 1.41093 0.92558 1.00687 0.92785 1.24988 0.95758 0.95624 0.97889 1.69973 1.48405 0.97342 1.37400 0.86606 0.78871 0.78049 0.84889 1.19800 1.21079 1.21145 1.20699 0.99815 0.97438 0.93859 1.20965 0.98767 0.93459 0.97942 1.21045 0.97882 0.96224 0.96703 1.19870 0.99457 0.96258 0.93810 1.20752 1.01362 0.92853 1.01816 1.20883 1.01452 0.94083 0.97997 1.20887 0.99927 0.95732 0.96983 0.93237 0.93446 0.92885 0.90257 0.92977 0.92425 0.91912 0.82474 0.92319 0.93131 0.93980 0.92962 0.92587 0.96685 0.97030 0.93256 0.85901 0.85926 0.91292 0.91719 0.92148 0.86825 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.36 5.86 -26.73 -0.16 -1.52 16 3 C -0.10 -1.26 4.87 -26.73 -0.13 -1.39 16 4 C 0.13 1.82 2.06 -68.86 -0.14 1.68 16 5 H 0.08 1.10 6.86 -51.93 -0.36 0.75 16 6 N -0.68 -11.05 5.41 -100.95 -0.55 -11.59 16 7 C 0.08 1.45 2.48 -67.71 -0.17 1.28 16 8 H 0.04 0.71 7.56 -51.93 -0.39 0.32 16 9 C -0.14 -2.00 9.34 37.16 0.35 -1.65 16 10 C -0.11 -2.38 4.76 -26.73 -0.13 -2.51 16 11 C 0.02 0.63 4.80 -27.88 -0.13 0.50 16 12 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.12 -1.83 4.47 -104.62 -0.47 -2.29 16 21 C -0.09 -1.63 9.13 -39.58 -0.36 -1.99 16 22 C -0.10 -1.74 9.70 -39.58 -0.38 -2.12 16 23 C -0.09 -1.44 5.88 -104.62 -0.62 -2.05 16 24 C -0.11 -1.39 10.01 36.01 0.36 -1.03 16 25 C -0.13 -1.81 9.70 -39.58 -0.38 -2.19 16 26 C -0.12 -1.70 9.67 -39.59 -0.38 -2.08 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.05 7.66 -51.93 -0.40 0.65 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.35 6.48 4.22 -39.30 -0.17 6.31 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.39 5.89 -51.93 -0.31 0.08 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.12 2.27 5.98 -52.49 -0.31 1.96 16 44 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 47 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 48 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 49 H 0.11 1.40 8.04 -52.49 -0.42 0.98 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -28.88 386.34 -10.83 -39.72 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -9.03 Total: 6.68 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -2.79 Total: -31.88 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.19 Total: -36.99 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.88 -10.83 -39.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.482 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds