Wall clock time and date at job start Tue Mar 31 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 C 1.53004 * 109.46829 * 183.19753 * 3 2 1 5 5 H 1.09001 * 109.47275 * 304.85503 * 4 3 2 6 6 N 1.46898 * 109.46964 * 64.85670 * 4 3 2 7 7 C 1.46907 * 110.99780 * 202.63428 * 6 4 3 8 8 H 1.08997 * 109.47027 * 322.66569 * 7 6 4 9 9 C 1.52997 * 109.47071 * 82.66489 * 7 6 4 10 10 C 1.53005 * 109.46901 * 202.66443 * 7 6 4 11 11 C 1.53004 * 109.47038 * 65.00097 * 10 7 6 12 12 C 1.50696 * 109.46764 * 180.02562 * 11 10 7 13 13 H 1.07996 * 120.00180 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99848 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99915 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00278 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47098 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47145 * 119.99632 * 16 14 12 19 19 H 1.48499 * 109.47695 * 240.00065 * 16 14 12 20 20 C 1.50702 * 109.47003 * 184.85651 * 4 3 2 21 21 C 1.38242 * 119.99351 * 279.72654 * 20 4 3 22 22 C 1.38236 * 119.99417 * 179.78587 * 21 20 4 23 23 C 1.38237 * 119.99956 * 0.46912 * 22 21 20 24 24 C 1.50700 * 119.99668 * 179.78869 * 23 22 21 25 25 C 1.38233 * 120.00256 * 359.76225 * 23 22 21 26 26 C 1.38231 * 120.00305 * 100.00217 * 20 4 3 27 27 H 1.08996 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.46950 * 299.99983 * 1 2 3 29 29 H 1.08998 * 109.47473 * 59.99510 * 1 2 3 30 30 H 1.08997 * 109.47011 * 239.99817 * 2 1 3 31 31 H 1.09006 * 109.47131 * 119.99950 * 2 1 3 32 32 H 1.09002 * 109.46924 * 63.19973 * 3 2 1 33 33 H 1.08994 * 109.47534 * 303.19733 * 3 2 1 34 34 H 1.00892 * 111.00417 * 78.67831 * 6 4 3 35 35 H 1.08998 * 109.47188 * 54.81310 * 9 7 6 36 36 H 1.09006 * 109.46681 * 174.81176 * 9 7 6 37 37 H 1.09007 * 109.47129 * 294.80656 * 9 7 6 38 38 H 1.09003 * 109.46551 * 184.99621 * 10 7 6 39 39 H 1.08996 * 109.46848 * 304.99830 * 10 7 6 40 40 H 1.09000 * 109.46679 * 299.99573 * 11 10 7 41 41 H 1.09004 * 109.47274 * 59.99539 * 11 10 7 42 42 H 0.97001 * 120.00114 * 180.02562 * 15 14 12 43 43 H 1.07996 * 120.00585 * 359.97438 * 21 20 4 44 44 H 1.07999 * 120.00066 * 180.25185 * 22 21 20 45 45 H 1.09002 * 109.47360 * 269.97315 * 24 23 22 46 46 H 1.09000 * 109.47509 * 29.97438 * 24 23 22 47 47 H 1.09001 * 109.47168 * 149.97792 * 24 23 22 48 48 H 1.07997 * 119.99979 * 180.02562 * 25 23 22 49 49 H 1.07999 * 119.99776 * 359.97438 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4432 -0.0805 5 1 3.9748 0.8405 0.7315 6 7 3.9906 0.8784 -1.3689 7 6 5.3656 0.3667 -1.2937 8 1 5.9644 1.0254 -0.6648 9 6 5.3541 -1.0403 -0.6930 10 6 5.9686 0.3164 -2.6990 11 6 6.0952 1.7379 -3.2509 12 6 6.6885 1.6882 -4.6352 13 1 6.9496 0.7380 -5.0771 14 6 6.8981 2.8560 -5.3377 15 7 6.5797 4.0131 -4.7998 16 14 7.6342 2.7946 -7.0534 17 1 7.9015 1.3824 -7.4271 18 1 6.6801 3.3905 -8.0230 19 1 8.9054 3.5619 -7.0745 20 6 4.0766 2.8567 0.0395 21 6 4.0580 3.6936 -1.0606 22 6 4.5205 4.9915 -0.9494 23 6 5.0105 5.4495 0.2593 24 6 5.5191 6.8630 0.3792 25 6 5.0336 4.6111 1.3581 26 6 4.5670 3.3145 1.2481 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7242 1.9395 0.9173 33 1 1.6306 1.9726 -0.8599 34 1 3.8974 1.5573 -2.1094 35 1 4.6820 -1.6760 -1.2695 36 1 6.3614 -1.4560 -0.7220 37 1 5.0108 -0.9914 0.3404 38 1 6.9550 -0.1453 -2.6548 39 1 5.3216 -0.2702 -3.3512 40 1 5.1088 2.1996 -3.2951 41 1 6.7422 2.3246 -2.5986 42 1 6.7267 4.8346 -5.2942 43 1 3.6793 3.3344 -2.0061 44 1 4.5022 5.6467 -1.8078 45 1 6.5838 6.8871 0.1467 46 1 4.9802 7.5036 -0.3189 47 1 5.3613 7.2209 1.3967 48 1 5.4160 4.9691 2.3025 49 1 4.5853 2.6594 2.1065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:01 Heat of formation + Delta-G solvation = -29.165227 kcal Electronic energy + Delta-G solvation = -23879.431961 eV Core-core repulsion = 20803.988969 eV Total energy + Delta-G solvation = -3075.442992 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82412 -38.64220 -36.43381 -34.91876 -34.00299 -32.20261 -31.82183 -30.78650 -28.74509 -27.33210 -26.95134 -23.97704 -23.64920 -23.11535 -21.88763 -21.12722 -20.85263 -18.54025 -17.52543 -17.05265 -16.54937 -16.03367 -15.80202 -15.76788 -15.63720 -14.85539 -14.57907 -14.44436 -14.32985 -14.23122 -14.11014 -13.96491 -13.29739 -13.23815 -13.08318 -12.99944 -12.92999 -12.87125 -12.54440 -12.41814 -12.37074 -12.16940 -12.03127 -11.75166 -11.70427 -11.60189 -11.45973 -11.32594 -11.25299 -10.88851 -10.53296 -9.78472 -9.39984 -9.23209 -8.17879 -6.28187 0.44865 0.54143 1.36990 1.37940 1.50457 2.40189 2.86071 3.14117 3.32362 3.74074 3.93589 4.07956 4.13720 4.13915 4.20835 4.31518 4.40290 4.41959 4.47206 4.51276 4.58569 4.65204 4.79155 4.80023 4.84985 4.87344 4.90931 4.96679 5.03723 5.07971 5.09008 5.11230 5.15423 5.21224 5.26213 5.31163 5.35305 5.47656 5.51573 5.54755 5.57192 5.65702 5.67470 5.74130 5.77678 5.86827 6.16923 6.27548 6.32908 6.47293 6.87604 7.40092 8.92403 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.005647 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.756653 B = 4956.850208 C = 6660.644828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.093 4.093 4 C 0.130 3.870 5 H 0.093 0.907 6 N -0.672 5.672 7 C 0.091 3.909 8 H 0.020 0.980 9 C -0.126 4.126 10 C -0.105 4.105 11 C 0.039 3.961 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.006 3.994 15 N -0.922 5.922 16 Si 0.957 3.043 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.280 1.280 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.101 4.101 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.336 0.664 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.000 1.000 41 H -0.024 1.024 42 H 0.261 0.739 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.147 0.853 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 -2.392 15.070 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.131 4.131 4 C 0.020 3.980 5 H 0.111 0.889 6 N -0.305 5.305 7 C -0.019 4.019 8 H 0.038 0.962 9 C -0.184 4.184 10 C -0.142 4.142 11 C 0.002 3.998 12 C -0.582 4.582 13 H 0.073 0.927 14 C -0.192 4.192 15 N -0.562 5.562 16 Si 0.782 3.218 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.206 1.206 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.148 4.148 23 C -0.101 4.101 24 C -0.166 4.166 25 C -0.143 4.143 26 C -0.135 4.135 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.019 0.981 41 H -0.006 1.006 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.165 0.835 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.111 -2.854 15.133 17.405 hybrid contribution 1.085 1.380 -1.524 2.325 sum -7.026 -1.474 13.609 15.386 Atomic orbital electron populations 1.21762 0.95684 1.01742 1.01463 1.21371 0.95467 0.95707 1.02324 1.21502 0.92323 0.97939 1.01332 1.20707 0.96181 0.88377 0.92718 0.88919 1.60949 1.22807 1.41147 1.05594 1.21453 0.88319 0.96529 0.95593 0.96212 1.21716 1.01544 0.94678 1.00479 1.21666 0.99356 0.97976 0.95248 1.18892 0.94644 0.92297 0.94007 1.21701 1.41611 0.92778 1.02072 0.92741 1.25860 0.96065 0.95212 1.02090 1.70108 1.49077 0.97991 1.39057 0.85522 0.78076 0.78437 0.79753 1.18870 1.20406 1.20565 1.20844 0.99970 0.97769 0.93827 1.20878 1.00241 0.94228 0.97886 1.21105 0.99849 0.96308 0.97528 1.20209 0.98791 0.97926 0.93223 1.20794 1.00952 0.91220 1.03619 1.21295 1.00381 0.93786 0.98805 1.21275 0.98667 0.96388 0.97206 0.92226 0.92416 0.93625 0.91962 0.91745 0.91062 0.93541 0.84201 0.92021 0.92343 0.91955 0.92946 0.92695 0.98145 1.00567 0.93062 0.88419 0.87661 0.91517 0.91631 0.89348 0.83509 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.11 -2.41 5.86 30.59 0.18 -2.24 16 3 C -0.09 -2.28 4.87 30.60 0.15 -2.13 16 4 C 0.13 3.66 2.06 44.17 0.09 3.75 16 5 H 0.09 2.36 6.86 -2.39 -0.02 2.35 16 6 N -0.67 -22.35 5.41 -473.29 -2.56 -24.91 16 7 C 0.09 3.17 2.48 44.91 0.11 3.28 16 8 H 0.02 0.76 7.56 -2.39 -0.02 0.74 16 9 C -0.13 -3.46 9.34 71.98 0.67 -2.79 16 10 C -0.10 -4.44 4.76 30.60 0.15 -4.30 16 11 C 0.04 2.06 4.80 29.85 0.14 2.20 16 12 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 13 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 14 C 0.01 0.35 5.46 84.66 0.46 0.82 16 15 N -0.92 -55.99 13.29 21.45 0.28 -55.70 16 16 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 17 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 C -0.12 -3.86 4.47 -19.86 -0.09 -3.95 16 21 C -0.11 -4.27 9.13 22.27 0.20 -4.07 16 22 C -0.13 -4.80 9.70 22.27 0.22 -4.59 16 23 C -0.10 -3.11 5.88 -19.87 -0.12 -3.23 16 24 C -0.11 -2.64 10.01 71.24 0.71 -1.93 16 25 C -0.12 -3.34 9.70 22.27 0.22 -3.13 16 26 C -0.12 -3.19 9.67 22.27 0.22 -2.98 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.58 7.66 -2.39 -0.02 1.56 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.34 13.18 4.22 -89.70 -0.38 12.80 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.06 1.47 7.32 -2.38 -0.02 1.45 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.00 0.02 5.89 -2.39 -0.01 0.01 16 41 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 42 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.10 4.05 5.98 -2.91 -0.02 4.03 16 44 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 1.55 8.09 -2.39 -0.02 1.53 16 47 H 0.09 1.62 8.09 -2.39 -0.02 1.61 16 48 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 49 H 0.14 3.03 8.04 -2.91 -0.02 3.00 16 Total: -1.00 -64.27 386.34 4.52 -59.75 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.51 Total: 32.42 kcal Atomic # 6 Polarization: -62.87 SS G_CDS: 4.26 Total: -58.61 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.28 Total: -80.62 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.27 4.52 -59.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.588 kcal (2) G-P(sol) polarization free energy of solvation -64.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds