Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 C 1.53008 * 109.47165 * 174.32863 * 3 2 1 5 5 H 1.08995 * 109.46767 * 305.76472 * 4 3 2 6 6 N 1.46902 * 109.47028 * 65.76458 * 4 3 2 7 7 C 1.46899 * 110.99774 * 209.18098 * 6 4 3 8 8 H 1.08989 * 109.47185 * 31.53587 * 7 6 4 9 9 C 1.52998 * 109.46732 * 271.53475 * 7 6 4 10 10 C 1.53005 * 109.46727 * 151.53724 * 7 6 4 11 11 C 1.52997 * 109.47042 * 294.99588 * 10 7 6 12 12 C 1.50701 * 109.46957 * 180.02562 * 11 10 7 13 13 H 1.07999 * 120.00024 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99986 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99871 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00060 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47237 * 90.00145 * 16 14 12 18 18 H 1.48501 * 109.47111 * 210.00511 * 16 14 12 19 19 H 1.48504 * 109.46949 * 330.00151 * 16 14 12 20 20 C 1.50699 * 109.46912 * 185.76654 * 4 3 2 21 21 C 1.38240 * 119.99569 * 279.72705 * 20 4 3 22 22 C 1.38237 * 119.99310 * 179.74983 * 21 20 4 23 23 C 1.38235 * 120.00578 * 0.54555 * 22 21 20 24 24 C 1.50694 * 120.00029 * 179.72641 * 23 22 21 25 25 C 1.38240 * 119.99603 * 359.70718 * 23 22 21 26 26 C 1.38232 * 120.00282 * 100.00063 * 20 4 3 27 27 H 1.09010 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47498 * 299.99901 * 1 2 3 29 29 H 1.09002 * 109.46888 * 60.00096 * 1 2 3 30 30 H 1.09002 * 109.47430 * 239.99603 * 2 1 3 31 31 H 1.09002 * 109.46888 * 119.99904 * 2 1 3 32 32 H 1.09004 * 109.47247 * 54.32965 * 3 2 1 33 33 H 1.08997 * 109.47090 * 294.32914 * 3 2 1 34 34 H 1.00904 * 110.99608 * 333.13388 * 6 4 3 35 35 H 1.09002 * 109.47300 * 299.99674 * 9 7 6 36 36 H 1.08996 * 109.47572 * 60.00383 * 9 7 6 37 37 H 1.09005 * 109.46662 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.46682 * 174.99826 * 10 7 6 39 39 H 1.08993 * 109.47115 * 54.99936 * 10 7 6 40 40 H 1.09003 * 109.47188 * 60.00548 * 11 10 7 41 41 H 1.09001 * 109.47135 * 300.00096 * 11 10 7 42 42 H 0.97002 * 120.00002 * 179.97438 * 15 14 12 43 43 H 1.08000 * 120.00032 * 359.97438 * 21 20 4 44 44 H 1.08002 * 119.99527 * 180.27060 * 22 21 20 45 45 H 1.08999 * 109.47472 * 269.97656 * 24 23 22 46 46 H 1.08994 * 109.47343 * 29.98469 * 24 23 22 47 47 H 1.09001 * 109.46990 * 149.98096 * 24 23 22 48 48 H 1.07999 * 120.00227 * 179.97438 * 25 23 22 49 49 H 1.08003 * 119.99625 * 0.02562 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5634 1.4448 0.1426 5 1 3.8464 0.8726 1.0260 6 7 4.1677 0.8357 -1.0499 7 6 5.4480 0.1946 -0.7220 8 1 5.4146 -0.1819 0.3003 9 6 6.5785 1.2173 -0.8521 10 6 5.6980 -0.9674 -1.6855 11 6 4.6368 -2.0478 -1.4677 12 6 4.8834 -3.1925 -2.4164 13 1 5.7137 -3.1531 -3.1059 14 6 4.0490 -4.2901 -2.4039 15 7 3.0377 -4.3378 -1.5645 16 14 4.3542 -5.7087 -3.5803 17 1 5.2566 -6.6983 -2.9388 18 1 3.0627 -6.3606 -3.9152 19 1 4.9860 -5.1948 -4.8221 20 6 4.0523 2.8631 0.2848 21 6 4.1957 3.6604 -0.8354 22 6 4.6393 4.9631 -0.7042 23 6 4.9503 5.4650 0.5457 24 6 5.4397 6.8831 0.6878 25 6 4.8118 4.6660 1.6653 26 6 4.3628 3.3651 1.5348 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.5961 1.9848 0.8349 33 1 1.7619 1.9261 -0.9364 34 1 3.5343 0.1791 -1.4808 35 1 6.6120 1.5938 -1.8745 36 1 6.4005 2.0451 -0.1657 37 1 7.5286 0.7414 -0.6092 38 1 6.6869 -1.3867 -1.5002 39 1 5.6432 -0.6060 -2.7124 40 1 3.6479 -1.6284 -1.6531 41 1 4.6916 -2.4091 -0.4408 42 1 2.4504 -5.1098 -1.5560 43 1 3.9577 3.2666 -1.8125 44 1 4.7472 5.5873 -1.5789 45 1 6.5269 6.9017 0.6112 46 1 5.0092 7.4971 -0.1032 47 1 5.1372 7.2763 1.6583 48 1 5.0551 5.0579 2.6418 49 1 4.2554 2.7407 2.4094 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -16.339123 kcal Electronic energy + Delta-G solvation = -23553.475175 eV Core-core repulsion = 20478.588364 eV Total energy + Delta-G solvation = -3074.886811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.65365 -37.55110 -35.01574 -33.25811 -32.69271 -30.89537 -30.68579 -29.26341 -27.65320 -26.32081 -24.99649 -22.87578 -22.54429 -21.46232 -20.84813 -19.89949 -19.49915 -16.40535 -16.15504 -15.73889 -15.15679 -14.95668 -14.70572 -14.49566 -14.20696 -13.78255 -13.58287 -13.23374 -12.99890 -12.90994 -12.54731 -12.44665 -12.22912 -12.13067 -12.01269 -11.78562 -11.48800 -11.24292 -11.17933 -11.14183 -10.97037 -10.85097 -10.78788 -10.48736 -10.41039 -10.29028 -10.05777 -9.73856 -9.26013 -9.01883 -8.75552 -8.35689 -8.28487 -7.98444 -6.00884 -4.02509 1.47730 1.58308 3.31326 3.37825 3.41427 3.89041 4.45671 4.54139 4.84992 4.93083 5.00717 5.16938 5.19398 5.28773 5.33263 5.35391 5.44136 5.49009 5.61752 5.64052 5.70515 5.72953 5.80057 5.83514 5.88642 5.93108 6.01980 6.05637 6.15847 6.22298 6.25313 6.27696 6.38783 6.45374 6.46880 6.56105 6.60156 6.60971 6.68283 6.71191 6.88530 6.95869 7.10696 7.18126 7.58270 7.63427 7.81674 7.94778 8.00358 8.42707 9.03778 9.61516 11.09975 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.003751 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.497308 B = 7461.914363 C = 8420.705602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.115 4.115 4 C 0.124 3.876 5 H 0.052 0.948 6 N -0.680 5.680 7 C 0.086 3.914 8 H 0.038 0.962 9 C -0.135 4.135 10 C -0.117 4.117 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.064 4.064 21 C -0.080 4.080 22 C -0.128 4.128 23 C -0.099 4.099 24 C -0.111 4.111 25 C -0.126 4.126 26 C -0.119 4.119 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.355 0.645 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.259 0.741 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.114 0.886 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 18.562 5.750 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.153 4.153 4 C 0.013 3.987 5 H 0.070 0.930 6 N -0.316 5.316 7 C -0.024 4.024 8 H 0.056 0.944 9 C -0.193 4.193 10 C -0.155 4.155 11 C -0.015 4.015 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.064 4.064 21 C -0.098 4.098 22 C -0.146 4.146 23 C -0.099 4.099 24 C -0.168 4.168 25 C -0.144 4.144 26 C -0.137 4.137 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.180 0.820 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.069 0.931 43 H 0.147 0.853 44 H 0.133 0.867 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.132 0.868 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.261 19.009 5.572 19.811 hybrid contribution -0.124 -1.714 -0.065 1.720 sum 0.137 17.295 5.506 18.151 Atomic orbital electron populations 1.21702 0.95977 1.01727 1.00950 1.21609 0.95888 0.96004 1.03301 1.21800 0.93631 0.97476 1.02386 1.20523 0.93452 0.91420 0.93267 0.93018 1.60584 1.06374 1.38852 1.25769 1.21652 0.89225 0.93508 0.97975 0.94426 1.21818 0.97086 0.98737 1.01678 1.21871 1.00812 0.94846 0.97955 1.19129 0.93202 0.92366 0.96809 1.21237 1.12498 1.02407 1.19550 0.92766 1.25007 0.95207 0.98399 0.95747 1.69956 1.16432 1.30071 1.36860 0.86629 0.77498 0.82612 0.81476 1.20762 1.21272 1.19889 1.19918 0.98093 0.95663 0.92769 1.21025 0.97181 0.92430 0.99177 1.21039 1.01058 0.96077 0.96454 1.19832 1.00380 0.96144 0.93536 1.20745 1.01008 0.92865 1.02161 1.20873 1.01512 0.94199 0.97819 1.21004 1.00059 0.95604 0.97054 0.92513 0.93419 0.93021 0.90654 0.92036 0.91823 0.91238 0.82047 0.92673 0.93360 0.93546 0.92855 0.92572 0.96596 0.97035 0.93097 0.85257 0.86672 0.91565 0.91875 0.91975 0.86755 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.15 0.37 -1.57 16 2 C -0.13 -1.95 5.68 -26.74 -0.15 -2.11 16 3 C -0.12 -1.55 4.74 -26.73 -0.13 -1.67 16 4 C 0.12 1.79 2.25 -68.86 -0.15 1.63 16 5 H 0.05 0.80 7.17 -51.93 -0.37 0.43 16 6 N -0.68 -11.04 5.41 -100.95 -0.55 -11.59 16 7 C 0.09 1.50 2.65 -67.71 -0.18 1.32 16 8 H 0.04 0.69 7.32 -51.94 -0.38 0.31 16 9 C -0.14 -2.11 9.27 37.16 0.34 -1.76 16 10 C -0.12 -2.40 4.72 -26.73 -0.13 -2.52 16 11 C 0.02 0.55 4.81 -27.88 -0.13 0.41 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.06 -0.86 3.27 -104.62 -0.34 -1.20 16 21 C -0.08 -1.06 9.18 -39.58 -0.36 -1.42 16 22 C -0.13 -1.53 9.70 -39.58 -0.38 -1.91 16 23 C -0.10 -1.11 5.88 -104.63 -0.62 -1.73 16 24 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 25 C -0.13 -1.45 9.70 -39.58 -0.38 -1.83 16 26 C -0.12 -1.49 9.67 -39.58 -0.38 -1.87 16 27 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.32 6.06 -51.93 -0.31 1.01 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.36 6.38 4.36 -39.29 -0.17 6.21 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.74 6.51 -51.93 -0.34 0.40 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.41 5.83 -51.93 -0.30 0.10 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.13 1.77 7.71 -52.49 -0.40 1.37 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 47 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 48 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 49 H 0.12 1.32 8.04 -52.48 -0.42 0.90 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -28.64 384.62 -10.72 -39.36 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -9.01 Total: 5.45 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -2.68 Total: -30.09 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.19 Total: -37.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.64 -10.72 -39.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.020 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds