Wall clock time and date at job start Tue Mar 31 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 C 1.53008 * 109.47165 * 174.32863 * 3 2 1 5 5 H 1.08995 * 109.46767 * 305.76472 * 4 3 2 6 6 N 1.46902 * 109.47028 * 65.76458 * 4 3 2 7 7 C 1.46899 * 110.99774 * 209.18098 * 6 4 3 8 8 H 1.08989 * 109.47185 * 31.53587 * 7 6 4 9 9 C 1.52998 * 109.46732 * 271.53475 * 7 6 4 10 10 C 1.53005 * 109.46727 * 151.53724 * 7 6 4 11 11 C 1.52997 * 109.47042 * 294.99588 * 10 7 6 12 12 C 1.50701 * 109.46957 * 180.02562 * 11 10 7 13 13 H 1.07999 * 120.00024 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99986 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99871 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00060 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47237 * 90.00145 * 16 14 12 18 18 H 1.48501 * 109.47111 * 210.00511 * 16 14 12 19 19 H 1.48504 * 109.46949 * 330.00151 * 16 14 12 20 20 C 1.50699 * 109.46912 * 185.76654 * 4 3 2 21 21 C 1.38240 * 119.99569 * 279.72705 * 20 4 3 22 22 C 1.38237 * 119.99310 * 179.74983 * 21 20 4 23 23 C 1.38235 * 120.00578 * 0.54555 * 22 21 20 24 24 C 1.50694 * 120.00029 * 179.72641 * 23 22 21 25 25 C 1.38240 * 119.99603 * 359.70718 * 23 22 21 26 26 C 1.38232 * 120.00282 * 100.00063 * 20 4 3 27 27 H 1.09010 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47498 * 299.99901 * 1 2 3 29 29 H 1.09002 * 109.46888 * 60.00096 * 1 2 3 30 30 H 1.09002 * 109.47430 * 239.99603 * 2 1 3 31 31 H 1.09002 * 109.46888 * 119.99904 * 2 1 3 32 32 H 1.09004 * 109.47247 * 54.32965 * 3 2 1 33 33 H 1.08997 * 109.47090 * 294.32914 * 3 2 1 34 34 H 1.00904 * 110.99608 * 333.13388 * 6 4 3 35 35 H 1.09002 * 109.47300 * 299.99674 * 9 7 6 36 36 H 1.08996 * 109.47572 * 60.00383 * 9 7 6 37 37 H 1.09005 * 109.46662 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.46682 * 174.99826 * 10 7 6 39 39 H 1.08993 * 109.47115 * 54.99936 * 10 7 6 40 40 H 1.09003 * 109.47188 * 60.00548 * 11 10 7 41 41 H 1.09001 * 109.47135 * 300.00096 * 11 10 7 42 42 H 0.97002 * 120.00002 * 179.97438 * 15 14 12 43 43 H 1.08000 * 120.00032 * 359.97438 * 21 20 4 44 44 H 1.08002 * 119.99527 * 180.27060 * 22 21 20 45 45 H 1.08999 * 109.47472 * 269.97656 * 24 23 22 46 46 H 1.08994 * 109.47343 * 29.98469 * 24 23 22 47 47 H 1.09001 * 109.46990 * 149.98096 * 24 23 22 48 48 H 1.07999 * 120.00227 * 179.97438 * 25 23 22 49 49 H 1.08003 * 119.99625 * 0.02562 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5634 1.4448 0.1426 5 1 3.8464 0.8726 1.0260 6 7 4.1677 0.8357 -1.0499 7 6 5.4480 0.1946 -0.7220 8 1 5.4146 -0.1819 0.3003 9 6 6.5785 1.2173 -0.8521 10 6 5.6980 -0.9674 -1.6855 11 6 4.6368 -2.0478 -1.4677 12 6 4.8834 -3.1925 -2.4164 13 1 5.7137 -3.1531 -3.1059 14 6 4.0490 -4.2901 -2.4039 15 7 3.0377 -4.3378 -1.5645 16 14 4.3542 -5.7087 -3.5803 17 1 5.2566 -6.6983 -2.9388 18 1 3.0627 -6.3606 -3.9152 19 1 4.9860 -5.1948 -4.8221 20 6 4.0523 2.8631 0.2848 21 6 4.1957 3.6604 -0.8354 22 6 4.6393 4.9631 -0.7042 23 6 4.9503 5.4650 0.5457 24 6 5.4397 6.8831 0.6878 25 6 4.8118 4.6660 1.6653 26 6 4.3628 3.3651 1.5348 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.5961 1.9848 0.8349 33 1 1.7619 1.9261 -0.9364 34 1 3.5343 0.1791 -1.4808 35 1 6.6120 1.5938 -1.8745 36 1 6.4005 2.0451 -0.1657 37 1 7.5286 0.7414 -0.6092 38 1 6.6869 -1.3867 -1.5002 39 1 5.6432 -0.6060 -2.7124 40 1 3.6479 -1.6284 -1.6531 41 1 4.6916 -2.4091 -0.4408 42 1 2.4504 -5.1098 -1.5560 43 1 3.9577 3.2666 -1.8125 44 1 4.7472 5.5873 -1.5789 45 1 6.5269 6.9017 0.6112 46 1 5.0092 7.4971 -0.1032 47 1 5.1372 7.2763 1.6583 48 1 5.0551 5.0579 2.6418 49 1 4.2554 2.7407 2.4094 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:05 Heat of formation + Delta-G solvation = -28.857722 kcal Electronic energy + Delta-G solvation = -23554.018022 eV Core-core repulsion = 20478.588364 eV Total energy + Delta-G solvation = -3075.429658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.68728 -38.78231 -36.46474 -34.98177 -33.98044 -32.20798 -31.65702 -30.91280 -28.77623 -27.30304 -26.91739 -23.93972 -23.56787 -23.23188 -21.93866 -21.08469 -20.98086 -18.51484 -17.22844 -16.91080 -16.54215 -16.49062 -15.97603 -15.74606 -15.48795 -14.86503 -14.47418 -14.43459 -14.34936 -14.18133 -14.10707 -13.90105 -13.39817 -13.22543 -13.21209 -12.96351 -12.86217 -12.79232 -12.63239 -12.53899 -12.31468 -12.28077 -12.11202 -11.74673 -11.72239 -11.64985 -11.48916 -11.35683 -11.24433 -10.93194 -10.53332 -9.69117 -9.35833 -9.21246 -8.18913 -6.28906 0.54057 0.64787 1.39098 1.39515 1.50710 2.40641 2.93829 3.13649 3.26615 3.79789 3.96575 4.06702 4.10478 4.12976 4.18075 4.28287 4.33453 4.35829 4.47210 4.50570 4.64183 4.70476 4.74482 4.76924 4.78698 4.85875 4.89562 4.96256 5.01071 5.02950 5.03661 5.06539 5.10996 5.22788 5.25869 5.30219 5.33106 5.39728 5.42752 5.45445 5.54084 5.65538 5.70667 5.82176 5.85447 5.88205 6.25223 6.26600 6.31984 6.50972 6.86523 7.39525 8.91723 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.003751 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.497308 B = 7461.914363 C = 8420.705602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.103 4.103 4 C 0.126 3.874 5 H 0.038 0.962 6 N -0.676 5.676 7 C 0.093 3.907 8 H 0.024 0.976 9 C -0.123 4.123 10 C -0.104 4.104 11 C 0.032 3.968 12 C -0.543 4.543 13 H 0.055 0.945 14 C 0.004 3.996 15 N -0.926 5.926 16 Si 0.959 3.041 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.265 1.265 20 C -0.076 4.076 21 C -0.091 4.091 22 C -0.134 4.134 23 C -0.100 4.100 24 C -0.110 4.110 25 C -0.129 4.129 26 C -0.128 4.128 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.343 0.657 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.004 0.996 41 H -0.019 1.019 42 H 0.262 0.738 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.136 0.864 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 20.351 5.691 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.141 4.141 4 C 0.016 3.984 5 H 0.056 0.944 6 N -0.310 5.310 7 C -0.016 4.016 8 H 0.042 0.958 9 C -0.181 4.181 10 C -0.142 4.142 11 C -0.006 4.006 12 C -0.581 4.581 13 H 0.074 0.926 14 C -0.194 4.194 15 N -0.566 5.566 16 Si 0.784 3.216 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.189 1.189 20 C -0.077 4.077 21 C -0.109 4.109 22 C -0.152 4.152 23 C -0.100 4.100 24 C -0.166 4.166 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.022 0.978 41 H -0.001 1.001 42 H 0.071 0.929 43 H 0.137 0.863 44 H 0.149 0.851 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.154 0.846 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.897 20.817 5.518 21.555 hybrid contribution -0.324 -2.235 -0.005 2.259 sum 0.573 18.582 5.513 19.391 Atomic orbital electron populations 1.21674 0.94347 1.01480 1.02444 1.21534 0.97342 0.96694 1.00892 1.21707 0.93009 0.96260 1.03141 1.20519 0.94042 0.92071 0.91755 0.94374 1.60676 1.05786 1.37910 1.26651 1.21534 0.90768 0.93152 0.96179 0.95766 1.21690 0.96364 0.98096 1.01901 1.21689 0.99147 0.94630 0.98721 1.18972 0.94119 0.93057 0.94404 1.21659 1.12668 1.03604 1.20128 0.92649 1.25888 0.94887 1.01212 0.97432 1.70084 1.17239 1.30951 1.38311 0.85541 0.77583 0.79095 0.79396 1.20031 1.20739 1.18944 1.19776 0.99556 0.94799 0.93548 1.21001 0.98073 0.93260 0.98572 1.21262 1.00657 0.95642 0.97604 1.20206 0.99209 0.97508 0.93040 1.20795 1.01470 0.91051 1.03322 1.21163 1.00767 0.93673 0.99061 1.21155 1.00226 0.96442 0.96805 0.93648 0.91326 0.92072 0.93949 0.93546 0.90133 0.90988 0.83473 0.92520 0.92817 0.92631 0.92813 0.92638 0.97829 1.00064 0.92929 0.86292 0.85069 0.90752 0.90894 0.90720 0.84616 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.13 -3.99 5.68 30.59 0.17 -3.82 16 3 C -0.10 -2.81 4.74 30.60 0.15 -2.66 16 4 C 0.13 3.72 2.25 44.17 0.10 3.82 16 5 H 0.04 1.23 7.17 -2.39 -0.02 1.21 16 6 N -0.68 -22.68 5.41 -473.31 -2.56 -25.24 16 7 C 0.09 3.33 2.65 44.92 0.12 3.45 16 8 H 0.02 0.93 7.32 -2.39 -0.02 0.91 16 9 C -0.12 -3.72 9.27 71.98 0.67 -3.05 16 10 C -0.10 -4.37 4.72 30.59 0.14 -4.23 16 11 C 0.03 1.65 4.81 29.85 0.14 1.79 16 12 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 16 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.08 -2.01 3.27 -19.87 -0.07 -2.08 16 21 C -0.09 -2.33 9.18 22.27 0.20 -2.13 16 22 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 23 C -0.10 -1.98 5.88 -19.87 -0.12 -2.09 16 24 C -0.11 -1.48 10.01 71.23 0.71 -0.77 16 25 C -0.13 -2.65 9.70 22.27 0.22 -2.44 16 26 C -0.13 -3.05 9.67 22.27 0.22 -2.83 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.60 6.06 -2.39 -0.01 1.59 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.34 13.03 4.36 -89.69 -0.39 12.64 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.58 6.51 -2.39 -0.02 1.56 16 37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.00 0.19 5.83 -2.39 -0.01 0.18 16 41 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.12 3.24 7.71 -2.91 -0.02 3.22 16 44 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 47 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 48 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 49 H 0.12 2.66 8.04 -2.91 -0.02 2.64 16 Total: -1.00 -62.05 384.62 4.53 -57.52 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.49 Total: 29.48 kcal Atomic # 6 Polarization: -57.19 SS G_CDS: 4.28 Total: -52.90 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.27 Total: -80.70 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.05 4.53 -57.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.661 kcal (2) G-P(sol) polarization free energy of solvation -62.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds