Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 C 1.52994 * 109.47729 * 120.00149 * 2 1 3 5 5 N 1.46900 * 109.46810 * 62.89868 * 4 2 1 6 6 C 1.46907 * 110.99640 * 72.41884 * 5 4 2 7 7 C 1.50708 * 109.46706 * 199.66635 * 6 5 4 8 8 C 1.38233 * 119.99607 * 263.79400 * 7 6 5 9 9 C 1.38243 * 119.99567 * 179.76789 * 8 7 6 10 10 C 1.38233 * 119.99916 * 0.51227 * 9 8 7 11 11 C 1.38233 * 119.99869 * 359.74404 * 10 9 8 12 12 C 1.38230 * 120.00428 * 0.02562 * 11 10 9 13 13 C 1.46898 * 111.00081 * 196.36991 * 5 4 2 14 14 H 1.09007 * 109.47123 * 186.05025 * 13 5 4 15 15 C 1.52998 * 109.47291 * 306.04697 * 13 5 4 16 16 C 1.52996 * 109.47098 * 66.04929 * 13 5 4 17 17 C 1.52999 * 109.47165 * 65.00229 * 16 13 5 18 18 C 1.50698 * 109.47353 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99711 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00369 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00258 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47090 * 90.00401 * 22 20 18 24 24 H 1.48501 * 109.47341 * 210.00124 * 22 20 18 25 25 H 1.48494 * 109.47150 * 330.00276 * 22 20 18 26 26 H 1.09004 * 109.47228 * 59.99819 * 1 2 3 27 27 H 1.09006 * 109.46872 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47250 * 299.99318 * 1 2 3 29 29 H 1.09002 * 109.47250 * 240.00682 * 2 1 3 30 30 H 1.09000 * 109.47103 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47413 * 300.00649 * 3 2 1 32 32 H 1.09002 * 109.46603 * 60.00286 * 3 2 1 33 33 H 1.08998 * 109.46800 * 302.90664 * 4 2 1 34 34 H 1.08994 * 109.47287 * 182.90104 * 4 2 1 35 35 H 1.08994 * 109.47032 * 319.66328 * 6 5 4 36 36 H 1.09000 * 109.47324 * 79.66833 * 6 5 4 37 37 H 1.07997 * 120.00580 * 0.02562 * 8 7 6 38 38 H 1.07999 * 119.99544 * 180.23011 * 9 8 7 39 39 H 1.08001 * 119.99616 * 179.71911 * 10 9 8 40 40 H 1.08004 * 119.99681 * 179.97438 * 11 10 9 41 41 H 1.08007 * 120.00417 * 179.97438 * 12 11 10 42 42 H 1.09000 * 109.47472 * 300.00188 * 15 13 5 43 43 H 1.09007 * 109.46769 * 60.00112 * 15 13 5 44 44 H 1.08996 * 109.47409 * 179.97438 * 15 13 5 45 45 H 1.08997 * 109.47130 * 305.00066 * 16 13 5 46 46 H 1.09003 * 109.47360 * 184.99849 * 16 13 5 47 47 H 1.08997 * 109.47230 * 59.99898 * 17 16 13 48 48 H 1.09003 * 109.46671 * 300.00042 * 17 16 13 49 49 H 0.97003 * 120.00266 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6085 -2.1250 1.2145 6 6 2.3616 -2.8825 0.2060 7 6 1.6049 -4.1368 -0.1485 8 6 1.9194 -5.3319 0.4709 9 6 1.2221 -6.4814 0.1492 10 6 0.2176 -6.4378 -0.7995 11 6 -0.0932 -5.2437 -1.4226 12 6 0.6008 -4.0932 -1.0975 13 6 1.7314 -2.7463 2.5399 14 1 1.5086 -3.8107 2.4643 15 6 3.1580 -2.5598 3.0604 16 6 0.7457 -2.0862 3.5061 17 6 -0.6860 -2.3791 3.0530 18 6 -1.6570 -1.7294 4.0050 19 1 -1.2896 -1.1638 4.8486 20 6 -3.0142 -1.8561 3.7985 21 7 -3.4616 -2.5444 2.7711 22 14 -4.2178 -1.0515 4.9789 23 1 -4.5264 0.3235 4.5103 24 1 -5.4692 -1.8494 5.0304 25 1 -3.6146 -0.9887 6.3344 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9565 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6349 -0.2384 2.1383 34 1 3.1288 -0.6764 1.2754 35 1 2.4897 -2.2709 -0.6869 36 1 3.3394 -3.1492 0.6072 37 1 2.7069 -5.3669 1.2090 38 1 1.4652 -7.4144 0.6358 39 1 -0.3241 -7.3368 -1.0541 40 1 -0.8777 -5.2097 -2.1641 41 1 0.3583 -3.1603 -1.5847 42 1 3.8603 -3.0301 2.3721 43 1 3.3809 -1.4955 3.1360 44 1 3.2491 -3.0205 4.0440 45 1 0.9111 -1.0089 3.5141 46 1 0.8980 -2.4847 4.5092 47 1 -0.8514 -3.4564 3.0450 48 1 -0.8383 -1.9806 2.0499 49 1 -4.4165 -2.6339 2.6260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = 3.888408 kcal Electronic energy + Delta-G solvation = -24415.640059 eV Core-core repulsion = 21341.630380 eV Total energy + Delta-G solvation = -3074.009679 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.49916 -38.03632 -34.94940 -33.39650 -32.13648 -30.58115 -30.30811 -28.84431 -26.66776 -26.20813 -25.24201 -23.91914 -22.26958 -21.41351 -20.69631 -19.94104 -18.55563 -16.46789 -16.10619 -15.59605 -15.36787 -15.09607 -14.51576 -14.44889 -14.34264 -13.60151 -13.27127 -13.10631 -12.96874 -12.73277 -12.47814 -12.34109 -12.05931 -11.92128 -11.85588 -11.73898 -11.51544 -11.24320 -10.93627 -10.81352 -10.78415 -10.67738 -10.51897 -10.42923 -10.37091 -10.14069 -9.97204 -9.48102 -9.12638 -8.82813 -8.56941 -8.41604 -8.17676 -7.67808 -5.83538 -3.84547 1.66943 1.74498 3.38696 3.45014 3.48058 4.00163 4.48878 4.57243 5.04485 5.10280 5.14480 5.27336 5.30469 5.36199 5.41065 5.50861 5.51932 5.53941 5.57288 5.67012 5.74636 5.79332 5.85089 5.92810 5.96657 6.01293 6.11632 6.24870 6.26602 6.31157 6.33330 6.35181 6.38362 6.43170 6.52946 6.67151 6.76121 6.79303 6.82185 6.95120 6.96111 7.08751 7.32166 7.36111 7.60625 7.66519 7.90830 8.14519 8.30611 8.62600 9.24590 9.77539 11.26915 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.006064 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.293793 B = 4615.959859 C = 5731.988447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.146 4.146 4 C 0.058 3.942 5 N -0.508 5.508 6 C 0.087 3.913 7 C -0.065 4.065 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.079 3.921 14 H 0.080 0.920 15 C -0.185 4.185 16 C -0.102 4.102 17 C 0.033 3.967 18 C -0.518 4.518 19 H 0.048 0.952 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.882 3.118 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.006 0.994 48 H 0.035 0.965 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.490 -1.452 -8.457 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.069 4.069 5 N -0.230 5.230 6 C -0.040 4.040 7 C -0.066 4.066 8 C -0.134 4.134 9 C -0.141 4.141 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.110 4.110 13 C -0.029 4.029 14 H 0.098 0.902 15 C -0.244 4.244 16 C -0.139 4.139 17 C -0.004 4.004 18 C -0.556 4.556 19 H 0.067 0.933 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.201 1.201 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.025 0.975 48 H 0.054 0.946 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.831 -1.506 -8.662 15.554 hybrid contribution -0.023 0.397 1.015 1.090 sum 12.808 -1.109 -7.647 14.958 Atomic orbital electron populations 1.21712 0.93637 1.03573 1.00466 1.21111 0.97497 0.94698 0.97537 1.21822 1.00048 0.96718 1.01756 1.22219 0.96401 0.89085 0.99240 1.62082 1.54620 1.00937 1.05369 1.21110 0.93875 0.92701 0.96351 1.19707 0.96858 0.94075 0.95933 1.20974 1.00273 0.92657 0.99458 1.21020 0.96807 0.98074 0.98184 1.21052 0.97899 0.97908 0.97386 1.21099 0.99391 0.92963 1.00226 1.20949 0.94881 0.97856 0.97343 1.21901 0.92995 0.99657 0.88310 0.90236 1.22515 0.99054 1.01608 1.01201 1.21723 0.97787 0.98568 0.95850 1.18967 0.87904 0.96209 0.97291 1.21334 0.91295 1.32188 1.10797 0.93344 1.24961 0.98352 0.95577 0.95323 1.69985 1.13443 1.41053 1.28560 0.86756 0.81036 0.79415 0.81716 1.20861 1.21410 1.20124 0.94493 0.90609 0.92590 0.92076 0.93478 0.92921 0.92600 0.89813 0.95689 0.90451 0.94243 0.86849 0.86663 0.86674 0.86465 0.86260 0.93532 0.92722 0.92421 0.93434 0.93624 0.97542 0.94646 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.06 37.16 0.34 -1.90 16 2 C -0.09 -1.22 2.92 -90.62 -0.27 -1.49 16 3 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 4 C 0.06 0.85 3.08 -3.83 -0.01 0.84 16 5 N -0.51 -8.10 3.14 -228.09 -0.72 -8.81 16 6 C 0.09 1.21 4.85 -4.97 -0.02 1.18 16 7 C -0.07 -0.98 5.02 -104.62 -0.52 -1.50 16 8 C -0.12 -1.65 8.43 -39.58 -0.33 -1.99 16 9 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 10 C -0.12 -1.73 10.05 -39.59 -0.40 -2.12 16 11 C -0.12 -1.72 10.05 -39.59 -0.40 -2.12 16 12 C -0.09 -1.39 9.73 -39.59 -0.38 -1.78 16 13 C 0.08 1.35 2.22 -67.72 -0.15 1.20 16 14 H 0.08 1.46 6.38 -51.93 -0.33 1.13 16 15 C -0.18 -2.58 8.52 37.16 0.32 -2.26 16 16 C -0.10 -2.11 4.57 -26.73 -0.12 -2.23 16 17 C 0.03 0.87 4.86 -27.88 -0.14 0.74 16 18 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 19 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 22 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.44 7.35 -51.93 -0.38 1.06 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.79 6.49 -51.93 -0.34 0.45 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.38 5.86 -51.93 -0.30 1.07 16 34 H 0.02 0.33 7.16 -51.93 -0.37 -0.04 16 35 H 0.08 0.99 6.22 -51.93 -0.32 0.67 16 36 H 0.04 0.51 6.08 -51.93 -0.32 0.19 16 37 H 0.11 1.47 8.02 -52.49 -0.42 1.05 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.05 0.58 6.45 -51.93 -0.34 0.25 16 43 H 0.05 0.74 6.70 -51.93 -0.35 0.40 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.98 6.10 -51.93 -0.32 0.66 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.04 0.98 7.41 -51.93 -0.39 0.60 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -30.58 378.09 -10.65 -41.23 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.79 Total: 1.79 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -2.56 Total: -30.51 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.02 Total: -35.35 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.58 -10.65 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.115 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds