Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 C 1.52994 * 109.47729 * 120.00149 * 2 1 3 5 5 N 1.46900 * 109.46810 * 62.89868 * 4 2 1 6 6 C 1.46907 * 110.99640 * 72.41884 * 5 4 2 7 7 C 1.50708 * 109.46706 * 199.66635 * 6 5 4 8 8 C 1.38233 * 119.99607 * 263.79400 * 7 6 5 9 9 C 1.38243 * 119.99567 * 179.76789 * 8 7 6 10 10 C 1.38233 * 119.99916 * 0.51227 * 9 8 7 11 11 C 1.38233 * 119.99869 * 359.74404 * 10 9 8 12 12 C 1.38230 * 120.00428 * 0.02562 * 11 10 9 13 13 C 1.46898 * 111.00081 * 196.36991 * 5 4 2 14 14 H 1.09007 * 109.47123 * 186.05025 * 13 5 4 15 15 C 1.52998 * 109.47291 * 306.04697 * 13 5 4 16 16 C 1.52996 * 109.47098 * 66.04929 * 13 5 4 17 17 C 1.52999 * 109.47165 * 65.00229 * 16 13 5 18 18 C 1.50698 * 109.47353 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99711 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00369 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00258 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47090 * 90.00401 * 22 20 18 24 24 H 1.48501 * 109.47341 * 210.00124 * 22 20 18 25 25 H 1.48494 * 109.47150 * 330.00276 * 22 20 18 26 26 H 1.09004 * 109.47228 * 59.99819 * 1 2 3 27 27 H 1.09006 * 109.46872 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47250 * 299.99318 * 1 2 3 29 29 H 1.09002 * 109.47250 * 240.00682 * 2 1 3 30 30 H 1.09000 * 109.47103 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47413 * 300.00649 * 3 2 1 32 32 H 1.09002 * 109.46603 * 60.00286 * 3 2 1 33 33 H 1.08998 * 109.46800 * 302.90664 * 4 2 1 34 34 H 1.08994 * 109.47287 * 182.90104 * 4 2 1 35 35 H 1.08994 * 109.47032 * 319.66328 * 6 5 4 36 36 H 1.09000 * 109.47324 * 79.66833 * 6 5 4 37 37 H 1.07997 * 120.00580 * 0.02562 * 8 7 6 38 38 H 1.07999 * 119.99544 * 180.23011 * 9 8 7 39 39 H 1.08001 * 119.99616 * 179.71911 * 10 9 8 40 40 H 1.08004 * 119.99681 * 179.97438 * 11 10 9 41 41 H 1.08007 * 120.00417 * 179.97438 * 12 11 10 42 42 H 1.09000 * 109.47472 * 300.00188 * 15 13 5 43 43 H 1.09007 * 109.46769 * 60.00112 * 15 13 5 44 44 H 1.08996 * 109.47409 * 179.97438 * 15 13 5 45 45 H 1.08997 * 109.47130 * 305.00066 * 16 13 5 46 46 H 1.09003 * 109.47360 * 184.99849 * 16 13 5 47 47 H 1.08997 * 109.47230 * 59.99898 * 17 16 13 48 48 H 1.09003 * 109.46671 * 300.00042 * 17 16 13 49 49 H 0.97003 * 120.00266 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6085 -2.1250 1.2145 6 6 2.3616 -2.8825 0.2060 7 6 1.6049 -4.1368 -0.1485 8 6 1.9194 -5.3319 0.4709 9 6 1.2221 -6.4814 0.1492 10 6 0.2176 -6.4378 -0.7995 11 6 -0.0932 -5.2437 -1.4226 12 6 0.6008 -4.0932 -1.0975 13 6 1.7314 -2.7463 2.5399 14 1 1.5086 -3.8107 2.4643 15 6 3.1580 -2.5598 3.0604 16 6 0.7457 -2.0862 3.5061 17 6 -0.6860 -2.3791 3.0530 18 6 -1.6570 -1.7294 4.0050 19 1 -1.2896 -1.1638 4.8486 20 6 -3.0142 -1.8561 3.7985 21 7 -3.4616 -2.5444 2.7711 22 14 -4.2178 -1.0515 4.9789 23 1 -4.5264 0.3235 4.5103 24 1 -5.4692 -1.8494 5.0304 25 1 -3.6146 -0.9887 6.3344 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9565 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6349 -0.2384 2.1383 34 1 3.1288 -0.6764 1.2754 35 1 2.4897 -2.2709 -0.6869 36 1 3.3394 -3.1492 0.6072 37 1 2.7069 -5.3669 1.2090 38 1 1.4652 -7.4144 0.6358 39 1 -0.3241 -7.3368 -1.0541 40 1 -0.8777 -5.2097 -2.1641 41 1 0.3583 -3.1603 -1.5847 42 1 3.8603 -3.0301 2.3721 43 1 3.3809 -1.4955 3.1360 44 1 3.2491 -3.0205 4.0440 45 1 0.9111 -1.0089 3.5141 46 1 0.8980 -2.4847 4.5092 47 1 -0.8514 -3.4564 3.0450 48 1 -0.8383 -1.9806 2.0499 49 1 -4.4165 -2.6339 2.6260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -10.395724 kcal Electronic energy + Delta-G solvation = -24416.259466 eV Core-core repulsion = 21341.630380 eV Total energy + Delta-G solvation = -3074.629085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67604 -39.21906 -36.27636 -35.24997 -33.70737 -31.82378 -31.68140 -30.30703 -27.85476 -27.41329 -26.96720 -25.30740 -23.37921 -23.10166 -22.02227 -21.26333 -19.85365 -18.33312 -17.56903 -16.89111 -16.61140 -16.42184 -16.25175 -15.63313 -15.58850 -14.90161 -14.54937 -14.46145 -14.17704 -14.13437 -13.97356 -13.66351 -13.40531 -13.26122 -13.17203 -13.04565 -12.88991 -12.84970 -12.71764 -12.36558 -12.18784 -11.89878 -11.80700 -11.77892 -11.75232 -11.57319 -11.29897 -11.21670 -11.06173 -10.86599 -10.44415 -9.69284 -9.53785 -8.87047 -8.10295 -6.20210 0.55260 0.62140 1.38360 1.39508 1.49993 2.43912 2.85903 3.21488 3.31735 3.93200 3.97702 4.02490 4.14714 4.17317 4.24324 4.33750 4.35147 4.38533 4.46056 4.54590 4.55852 4.72326 4.72924 4.79679 4.83689 4.90146 4.91521 4.94963 5.03879 5.08631 5.14654 5.16873 5.19904 5.25076 5.25555 5.33362 5.37270 5.49954 5.58238 5.61596 5.65450 5.68478 5.71724 5.82490 5.94618 6.10946 6.22913 6.37469 6.42566 6.44467 6.99843 7.47062 9.00128 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.006064 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.293793 B = 4615.959859 C = 5731.988447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.140 4.140 4 C 0.062 3.938 5 N -0.529 5.529 6 C 0.093 3.907 7 C -0.079 4.079 8 C -0.125 4.125 9 C -0.132 4.132 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.112 4.112 13 C 0.088 3.912 14 H 0.063 0.937 15 C -0.174 4.174 16 C -0.091 4.091 17 C 0.049 3.951 18 C -0.540 4.540 19 H 0.051 0.949 20 C 0.003 3.997 21 N -0.927 5.927 22 Si 0.953 3.047 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.266 1.266 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.043 0.957 47 H -0.032 1.032 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.108 -0.843 -8.184 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.102 4.102 3 C -0.198 4.198 4 C -0.066 4.066 5 N -0.252 5.252 6 C -0.034 4.034 7 C -0.079 4.079 8 C -0.144 4.144 9 C -0.149 4.149 10 C -0.153 4.153 11 C -0.153 4.153 12 C -0.131 4.131 13 C -0.021 4.021 14 H 0.081 0.919 15 C -0.233 4.233 16 C -0.129 4.129 17 C 0.012 3.988 18 C -0.578 4.578 19 H 0.069 0.931 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.778 3.222 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.190 1.190 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.062 0.938 47 H -0.014 1.014 48 H 0.029 0.971 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.466 -0.889 -8.385 16.744 hybrid contribution -0.585 0.169 0.896 1.083 sum 13.881 -0.720 -7.489 15.789 Atomic orbital electron populations 1.21603 0.96184 1.01047 0.99779 1.21081 0.95072 0.96347 0.97700 1.21770 1.01276 0.94895 1.01847 1.22189 0.97602 0.88123 0.98658 1.61960 1.56237 1.01814 1.05192 1.21117 0.93969 0.92171 0.96143 1.19930 0.97071 0.94938 0.95982 1.21238 1.00800 0.92692 0.99654 1.21381 0.96519 0.98982 0.98059 1.21386 0.98116 0.98486 0.97267 1.21381 0.99824 0.93242 1.00843 1.21126 0.95657 0.98180 0.98135 1.21629 0.93966 0.98156 0.88327 0.91859 1.22377 0.96758 1.02353 1.01772 1.21539 0.95526 0.99096 0.96743 1.18713 0.91169 0.93120 0.95776 1.21774 0.92351 1.32399 1.11302 0.93098 1.25856 1.00426 0.96076 0.97068 1.70132 1.13915 1.42299 1.30374 0.85635 0.78379 0.78524 0.79633 1.19936 1.20900 1.18996 0.93067 0.93993 0.95261 0.90710 0.91432 0.91954 0.93448 0.92061 0.93279 0.89269 0.92551 0.85422 0.84447 0.84598 0.85290 0.86420 0.91443 0.92060 0.91961 0.93219 0.93805 1.01363 0.97081 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.06 71.98 0.65 -3.68 16 2 C -0.08 -2.18 2.92 -10.79 -0.03 -2.21 16 3 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 4 C 0.06 1.73 3.08 86.30 0.27 2.00 16 5 N -0.53 -16.71 3.14 -875.53 -2.75 -19.46 16 6 C 0.09 2.46 4.85 85.56 0.42 2.87 16 7 C -0.08 -2.34 5.02 -19.86 -0.10 -2.44 16 8 C -0.13 -3.53 8.43 22.27 0.19 -3.34 16 9 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 10 C -0.13 -3.71 10.05 22.27 0.22 -3.48 16 11 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 12 C -0.11 -3.51 9.73 22.27 0.22 -3.29 16 13 C 0.09 2.95 2.22 44.91 0.10 3.05 16 14 H 0.06 2.34 6.38 -2.38 -0.02 2.33 16 15 C -0.17 -4.43 8.52 71.98 0.61 -3.82 16 16 C -0.09 -3.87 4.57 30.59 0.14 -3.73 16 17 C 0.05 2.70 4.86 29.85 0.15 2.84 16 18 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 19 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 20 C 0.00 0.20 5.46 84.65 0.46 0.66 16 21 N -0.93 -58.41 13.29 21.44 0.28 -58.13 16 22 Si 0.95 45.96 29.54 68.60 2.03 47.99 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.68 7.35 -2.38 -0.02 1.66 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.78 6.49 -2.39 -0.02 1.76 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.06 2.00 5.86 -2.39 -0.01 1.98 16 34 H 0.05 1.15 7.16 -2.39 -0.02 1.14 16 35 H 0.09 2.12 6.22 -2.39 -0.01 2.10 16 36 H 0.06 1.30 6.08 -2.39 -0.01 1.28 16 37 H 0.13 3.12 8.02 -2.91 -0.02 3.09 16 38 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.07 1.46 6.45 -2.39 -0.02 1.44 16 43 H 0.06 1.49 6.70 -2.38 -0.02 1.48 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 2.07 6.10 -2.39 -0.01 2.06 16 46 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 47 H -0.03 -1.97 8.14 -2.39 -0.02 -1.99 16 48 H 0.01 0.64 7.41 -2.39 -0.02 0.62 16 49 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -68.03 378.09 5.08 -62.96 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.88 Total: 22.35 kcal Atomic # 6 Polarization: -60.33 SS G_CDS: 4.63 Total: -55.70 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -2.47 Total: -77.59 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.03 5.08 -62.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.561 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds