Wall clock time and date at job start Tue Mar 31 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47278 * 2 1 4 4 C 1.52997 * 109.47059 * 239.99507 * 2 1 3 5 5 C 1.53000 * 109.47217 * 159.76796 * 4 2 1 6 6 C 1.50697 * 109.47429 * 185.69410 * 5 4 2 7 7 H 1.08003 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00234 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99580 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00153 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47347 * 60.00159 * 10 8 6 12 12 H 1.48498 * 109.47319 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47435 * 300.00287 * 10 8 6 14 14 N 1.46906 * 109.46785 * 119.99640 * 2 1 3 15 15 C 1.46901 * 110.99565 * 151.38421 * 14 2 1 16 16 C 1.46898 * 110.99824 * 275.33727 * 14 2 1 17 17 C 1.53004 * 109.47349 * 295.31145 * 16 14 2 18 18 C 1.52997 * 109.47482 * 55.31223 * 16 14 2 19 19 C 1.53001 * 109.46918 * 175.31532 * 16 14 2 20 20 C 1.50697 * 109.47247 * 179.97438 * 19 16 14 21 21 C 1.38234 * 120.00482 * 269.72943 * 20 19 16 22 22 C 1.38231 * 120.00021 * 179.76583 * 21 20 19 23 23 C 1.38230 * 120.00115 * 0.48425 * 22 21 20 24 24 C 1.38233 * 120.00054 * 359.78921 * 23 22 21 25 25 C 1.38233 * 119.99906 * 359.95672 * 24 23 22 26 26 H 1.09007 * 109.47191 * 52.64116 * 1 2 3 27 27 H 1.09000 * 109.47506 * 172.64823 * 1 2 3 28 28 H 1.09006 * 109.47432 * 292.64826 * 1 2 3 29 29 H 1.09002 * 109.47489 * 279.76773 * 4 2 1 30 30 H 1.09000 * 109.47277 * 39.77075 * 4 2 1 31 31 H 1.09005 * 109.47376 * 305.70076 * 5 4 2 32 32 H 1.09004 * 109.46684 * 65.69627 * 5 4 2 33 33 H 0.97002 * 119.99163 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47040 * 69.78438 * 15 14 2 35 35 H 1.08994 * 109.47167 * 189.77945 * 15 14 2 36 36 H 1.08996 * 109.47498 * 309.78074 * 15 14 2 37 37 H 1.09003 * 109.46937 * 64.76884 * 17 16 14 38 38 H 1.08992 * 109.47203 * 184.76868 * 17 16 14 39 39 H 1.09003 * 109.47249 * 304.77394 * 17 16 14 40 40 H 1.09006 * 109.46650 * 51.53891 * 18 16 14 41 41 H 1.08997 * 109.47356 * 171.52837 * 18 16 14 42 42 H 1.08995 * 109.47364 * 291.53963 * 18 16 14 43 43 H 1.08996 * 109.46886 * 299.99857 * 19 16 14 44 44 H 1.09000 * 109.47149 * 60.00106 * 19 16 14 45 45 H 1.08002 * 119.99823 * 359.97438 * 21 20 19 46 46 H 1.08001 * 120.00128 * 180.25270 * 22 21 20 47 47 H 1.08010 * 120.00379 * 179.76949 * 23 22 21 48 48 H 1.08005 * 119.99948 * 179.97438 * 24 23 22 49 49 H 1.08005 * 119.99865 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.4860 -0.3042 -1.5243 6 6 3.9423 -0.9041 -2.8293 7 1 3.2681 -1.5208 -3.4051 8 6 5.2201 -0.6647 -3.2888 9 7 6.0408 0.0867 -2.5878 10 14 5.7853 -1.4077 -4.9066 11 1 4.9123 -0.9231 -6.0058 12 1 7.1889 -1.0030 -5.1736 13 1 5.7044 -2.8883 -4.8265 14 7 2.0196 -0.6925 1.1995 15 6 3.3301 -1.3088 0.9534 16 6 2.0747 0.2207 2.3489 17 6 3.1068 1.3178 2.0796 18 6 0.6993 0.8559 2.5622 19 6 2.4758 -0.5602 3.6019 20 6 2.5330 0.3767 4.7809 21 6 3.7143 1.0230 5.0935 22 6 3.7654 1.8861 6.1721 23 6 2.6380 2.0952 6.9440 24 6 1.4582 1.4445 6.6348 25 6 1.4056 0.5854 5.5531 26 1 -0.3634 0.6236 -0.8169 27 1 -0.3634 -1.0192 -0.1315 28 1 -0.3634 0.3957 0.9485 29 1 1.9967 -1.7988 -1.0897 30 1 1.4164 -0.4550 -2.1026 31 1 3.5458 0.7826 -1.5834 32 1 4.1266 -0.6600 -0.7173 33 1 6.9399 0.2548 -2.9109 34 1 4.0845 -0.5290 0.8491 35 1 3.5902 -1.9561 1.7909 36 1 3.2881 -1.8986 0.0378 37 1 2.7778 1.9273 1.2380 38 1 3.2091 1.9455 2.9647 39 1 4.0685 0.8620 1.8441 40 1 -0.0592 0.0741 2.6042 41 1 0.6980 1.4139 3.4985 42 1 0.4790 1.5317 1.7359 43 1 1.7406 -1.3417 3.7938 44 1 3.4558 -1.0126 3.4500 45 1 4.5964 0.8563 4.4930 46 1 4.6872 2.3942 6.4139 47 1 2.6788 2.7667 7.7890 48 1 0.5774 1.6075 7.2383 49 1 0.4837 0.0774 5.3113 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498270.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:33 Heat of formation + Delta-G solvation = 41.715309 kcal Electronic energy + Delta-G solvation = -24191.907395 eV Core-core repulsion = 21119.538014 eV Total energy + Delta-G solvation = -3072.369381 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19341 -38.69618 -35.08307 -32.89776 -31.36599 -31.12327 -30.81166 -29.23097 -27.01169 -26.49701 -24.87996 -24.70914 -22.51575 -21.88627 -21.04308 -19.74502 -18.22721 -16.68128 -16.16848 -16.11804 -15.25840 -15.22585 -15.03009 -14.48207 -14.04824 -13.84555 -13.52750 -13.18329 -13.10946 -12.97692 -12.62840 -12.39357 -12.08073 -11.89022 -11.84951 -11.50065 -11.32938 -11.21268 -11.00807 -10.96452 -10.92760 -10.83907 -10.64564 -10.54227 -10.47218 -10.12859 -9.95767 -9.64329 -9.12805 -8.92898 -8.87897 -8.65712 -8.27626 -7.62926 -5.97736 -3.98652 1.31859 1.35172 3.33887 3.38293 3.41014 3.72225 4.31478 4.47644 4.80283 4.88745 4.96533 5.06087 5.10247 5.16321 5.37835 5.42203 5.46544 5.49510 5.55653 5.75969 5.78527 5.83063 5.86372 5.91134 5.95466 6.01957 6.07337 6.12514 6.18085 6.22923 6.26184 6.28935 6.34963 6.42728 6.45871 6.48334 6.58403 6.61326 6.66494 6.71472 6.87283 6.96835 7.03023 7.15780 7.60035 7.69876 7.73413 7.93037 8.03662 8.46991 9.07822 9.64347 11.13161 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.003668 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.057634 B = 7632.405515 C = 8375.696106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 H 0.047 0.953 4 C -0.114 4.114 5 C -0.002 4.002 6 C -0.518 4.518 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.889 3.111 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.523 5.523 15 C 0.004 3.996 16 C 0.116 3.884 17 C -0.186 4.186 18 C -0.147 4.147 19 C -0.071 4.071 20 C -0.066 4.066 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.116 4.116 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.008 0.992 32 H 0.043 0.957 33 H 0.259 0.741 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.771 2.575 17.908 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.032 4.032 3 H 0.065 0.935 4 C -0.152 4.152 5 C -0.039 4.039 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.717 3.283 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.203 1.203 14 N -0.247 5.247 15 C -0.143 4.143 16 C 0.026 3.974 17 C -0.245 4.245 18 C -0.204 4.204 19 C -0.109 4.109 20 C -0.067 4.067 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.134 4.134 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.929 2.262 17.994 20.215 hybrid contribution 1.074 0.390 -1.214 1.667 sum -7.855 2.652 16.781 18.717 Atomic orbital electron populations 1.22360 0.95832 1.01633 1.01845 1.21822 0.94409 0.96841 0.90098 0.93522 1.21904 0.99833 0.99271 0.94155 1.19799 0.90061 0.96414 0.97592 1.21254 0.97708 1.30585 1.06106 0.92990 1.24994 0.96893 0.95343 0.97150 1.69952 1.06879 1.38335 1.38418 0.86707 0.77596 0.79644 0.84344 1.20365 1.21368 1.20276 1.62399 1.26694 1.31479 1.04123 1.23116 0.89604 0.99370 1.02169 1.20862 0.94839 0.91090 0.90634 1.22583 1.00432 0.99626 1.01836 1.22299 0.96241 1.00434 1.01428 1.20692 1.02873 0.96337 0.90957 1.19909 0.93316 0.97317 0.96125 1.21140 0.97907 0.96988 0.97192 1.21133 0.98403 0.98679 0.95690 1.21088 0.93351 1.00386 1.00009 1.21109 0.97853 0.97526 0.97618 1.21079 0.98085 0.98958 0.95238 0.93438 0.92851 0.91162 0.92430 0.93023 0.97339 0.93871 0.93092 0.93501 0.93313 0.88711 0.92282 0.92209 0.91691 0.91661 0.92387 0.92009 0.90380 0.90692 0.86040 0.86343 0.86545 0.86425 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.78 37.16 0.33 -2.04 16 2 C 0.08 1.32 1.88 -67.71 -0.13 1.20 16 3 H 0.05 0.88 5.45 -51.93 -0.28 0.59 16 4 C -0.11 -2.36 4.21 -26.73 -0.11 -2.47 16 5 C 0.00 -0.05 4.17 -27.88 -0.12 -0.17 16 6 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.52 -8.40 4.50 -219.23 -0.99 -9.39 16 15 C 0.00 0.08 6.95 60.06 0.42 0.50 16 16 C 0.12 1.60 0.47 -131.60 -0.06 1.54 16 17 C -0.19 -2.80 7.47 37.16 0.28 -2.52 16 18 C -0.15 -1.83 6.43 37.16 0.24 -1.59 16 19 C -0.07 -0.88 4.24 -27.88 -0.12 -1.00 16 20 C -0.07 -0.77 4.03 -104.63 -0.42 -1.19 16 21 C -0.11 -1.31 7.79 -39.59 -0.31 -1.62 16 22 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 23 C -0.13 -1.26 10.05 -39.59 -0.40 -1.65 16 24 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16 25 C -0.12 -1.21 7.70 -39.58 -0.30 -1.52 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.92 3.72 -51.93 -0.19 0.73 16 29 H 0.06 1.19 6.79 -51.93 -0.35 0.84 16 30 H 0.05 1.08 7.98 -51.93 -0.41 0.67 16 31 H 0.01 0.23 8.02 -51.93 -0.42 -0.19 16 32 H 0.04 1.10 3.99 -51.93 -0.21 0.90 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.05 0.92 4.41 -51.93 -0.23 0.69 16 35 H 0.05 0.76 6.64 -51.93 -0.35 0.42 16 36 H 0.09 1.90 4.60 -51.93 -0.24 1.66 16 37 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 38 H 0.06 0.82 5.86 -51.93 -0.30 0.52 16 39 H 0.06 1.07 6.02 -51.93 -0.31 0.75 16 40 H 0.06 0.78 7.15 -51.93 -0.37 0.41 16 41 H 0.06 0.67 5.60 -51.93 -0.29 0.38 16 42 H 0.06 0.80 6.03 -51.93 -0.31 0.49 16 43 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 44 H 0.07 0.97 6.49 -51.93 -0.34 0.63 16 45 H 0.12 1.37 8.04 -52.49 -0.42 0.95 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 49 H 0.12 1.13 8.01 -52.48 -0.42 0.71 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -29.41 353.22 -9.72 -39.13 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.86 Total: 3.34 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -1.91 Total: -29.16 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.25 Total: -35.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.41 -9.72 -39.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498270.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.841 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds